Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 AC005332.1-201ENST00000577698 1310 ntBASIC18.15■□□□□ 0.5
TRIM39Q9HCM9 SLBP-201ENST00000318386 1635 ntAPPRIS ALT1 TSL 3 BASIC18.15■□□□□ 0.5
TRIM39Q9HCM9 TEPSIN-201ENST00000300714 2287 ntAPPRIS P2 TSL 1 (best) BASIC18.15■□□□□ 0.5
TRIM39Q9HCM9 PAX1-205ENST00000613128 5352 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
TRIM39Q9HCM9 SDHAP2-201ENST00000455183 2001 ntBASIC18.15■□□□□ 0.5
TRIM39Q9HCM9 FBXO24-202ENST00000427939 2087 ntTSL 2 BASIC18.14■□□□□ 0.5
TRIM39Q9HCM9 SLC38A10-201ENST00000288439 2708 ntAPPRIS P3 TSL 1 (best) BASIC18.14■□□□□ 0.5
TRIM39Q9HCM9 PODN-203ENST00000395871 2744 ntTSL 5 BASIC18.14■□□□□ 0.5
TRIM39Q9HCM9 PKD2-201ENST00000237596 5056 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
TRIM39Q9HCM9 UROS-202ENST00000368778 1556 ntTSL 2 BASIC18.14■□□□□ 0.49
TRIM39Q9HCM9 FBXL20-202ENST00000394294 2309 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
TRIM39Q9HCM9 MIR662-201ENST00000384847 95 ntBASIC18.14■□□□□ 0.49
TRIM39Q9HCM9 AANAT-202ENST00000392492 1005 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
TRIM39Q9HCM9 REPIN1-210ENST00000482680 1029 ntTSL 2 BASIC18.14■□□□□ 0.49
TRIM39Q9HCM9 AC091076.1-201ENST00000610741 619 ntBASIC18.14■□□□□ 0.49
TRIM39Q9HCM9 AL358472.4-201ENST00000633140 710 ntBASIC18.14■□□□□ 0.49
TRIM39Q9HCM9 NTMT1-203ENST00000372483 1315 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
TRIM39Q9HCM9 OARD1-202ENST00000424266 1337 ntAPPRIS P1 TSL 2 BASIC18.14■□□□□ 0.49
TRIM39Q9HCM9 TMEM179-201ENST00000341595 2513 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
TRIM39Q9HCM9 FOXP4-202ENST00000373057 3300 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
TRIM39Q9HCM9 RIOX2-201ENST00000333396 5347 ntAPPRIS ALT1 TSL 1 (best) BASIC18.14■□□□□ 0.49
TRIM39Q9HCM9 NPEPL1-203ENST00000525817 1780 ntTSL 2 BASIC18.14■□□□□ 0.49
TRIM39Q9HCM9 SMARCC2-203ENST00000394023 4271 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
TRIM39Q9HCM9 EIF4ENIF1-202ENST00000344710 3115 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
TRIM39Q9HCM9 HAUS8-202ENST00000448593 1545 ntAPPRIS ALT2 TSL 5 BASIC18.13■□□□□ 0.49
TRIM39Q9HCM9 THNSL2-205ENST00000449349 1616 ntTSL 5 BASIC18.13■□□□□ 0.49
TRIM39Q9HCM9 KIF22-201ENST00000160827 2113 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
TRIM39Q9HCM9 PLEKHG5-201ENST00000340850 4715 ntAPPRIS P3 TSL 5 BASIC18.13■□□□□ 0.49
TRIM39Q9HCM9 PLEKHG5-211ENST00000535355 4725 ntAPPRIS ALT2 TSL 2 BASIC18.13■□□□□ 0.49
TRIM39Q9HCM9 HIPK1-207ENST00000369561 3777 ntTSL 5 BASIC18.13■□□□□ 0.49
TRIM39Q9HCM9 TYMSOS-201ENST00000323813 844 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
TRIM39Q9HCM9 PARK7-201ENST00000338639 949 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
TRIM39Q9HCM9 TNFRSF10C-202ENST00000397703 1242 ntTSL 2 BASIC18.13■□□□□ 0.49
TRIM39Q9HCM9 ST20-202ENST00000485386 529 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
TRIM39Q9HCM9 PTK2-216ENST00000519881 863 ntTSL 3 BASIC18.13■□□□□ 0.49
TRIM39Q9HCM9 AC116407.4-201ENST00000623319 1061 ntBASIC18.13■□□□□ 0.49
TRIM39Q9HCM9 CLN3-259ENST00000637551 1083 ntTSL 5 BASIC18.13■□□□□ 0.49
TRIM39Q9HCM9 AP000550.4-202ENST00000639755 178 ntBASIC18.13■□□□□ 0.49
TRIM39Q9HCM9 PKMYT1-203ENST00000431515 2308 ntTSL 2 BASIC18.13■□□□□ 0.49
TRIM39Q9HCM9 SH3BP2-202ENST00000435136 2318 ntAPPRIS P3 TSL 2 BASIC18.13■□□□□ 0.49
TRIM39Q9HCM9 AGPAT2-201ENST00000371694 1391 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
TRIM39Q9HCM9 METTL5-207ENST00000410097 1370 ntTSL 2 BASIC18.13■□□□□ 0.49
TRIM39Q9HCM9 WDR45-205ENST00000376358 1432 ntTSL 2 BASIC18.13■□□□□ 0.49
TRIM39Q9HCM9 MAP2K5-202ENST00000340972 1491 ntTSL 2 BASIC18.13■□□□□ 0.49
TRIM39Q9HCM9 SDF4-201ENST00000263741 2079 ntAPPRIS P3 TSL 1 (best) BASIC18.13■□□□□ 0.49
TRIM39Q9HCM9 KCNN2-208ENST00000631899 2098 ntAPPRIS ALT2 TSL 5 BASIC18.13■□□□□ 0.49
TRIM39Q9HCM9 ASL-204ENST00000395331 1538 ntTSL 5 BASIC18.13■□□□□ 0.49
TRIM39Q9HCM9 MEN1-201ENST00000312049 2761 ntAPPRIS ALT1 TSL 1 (best) BASIC18.13■□□□□ 0.49
TRIM39Q9HCM9 AVPR1A-201ENST00000299178 5963 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
TRIM39Q9HCM9 FSCN2-201ENST00000334850 1551 ntTSL 5 BASIC18.13■□□□□ 0.49
TRIM39Q9HCM9 KIAA1549-201ENST00000422774 6283 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
TRIM39Q9HCM9 RNF167-205ENST00000571816 1728 ntAPPRIS P3 TSL 5 BASIC18.12■□□□□ 0.49
TRIM39Q9HCM9 ADCY6-206ENST00000550422 5877 ntTSL 2 BASIC18.12■□□□□ 0.49
TRIM39Q9HCM9 TLK2-203ENST00000346027 3449 ntAPPRIS P3 TSL 1 (best) BASIC18.12■□□□□ 0.49
TRIM39Q9HCM9 NDN-201ENST00000331837 1931 ntAPPRIS P1 BASIC18.12■□□□□ 0.49
TRIM39Q9HCM9 RGMB-AS1-201ENST00000498871 1903 ntTSL 2 BASIC18.12■□□□□ 0.49
TRIM39Q9HCM9 PDXK-219ENST00000621478 1967 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
TRIM39Q9HCM9 LEMD2-214ENST00000614475 2883 ntAPPRIS P1 TSL 5 BASIC18.12■□□□□ 0.49
TRIM39Q9HCM9 CGRRF1-201ENST00000216420 2057 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
TRIM39Q9HCM9 POU4F3-201ENST00000230732 1182 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
TRIM39Q9HCM9 BEX1-201ENST00000372728 864 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
TRIM39Q9HCM9 TBC1D7-205ENST00000379307 1084 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
TRIM39Q9HCM9 AL645929.1-201ENST00000420084 975 ntBASIC18.12■□□□□ 0.49
TRIM39Q9HCM9 PLPP5-202ENST00000422581 853 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
TRIM39Q9HCM9 TMEM243-203ENST00000433078 1273 ntAPPRIS P1 TSL 2 BASIC18.12■□□□□ 0.49
TRIM39Q9HCM9 AC126763.1-201ENST00000552015 2118 ntBASIC18.12■□□□□ 0.49
TRIM39Q9HCM9 CLDN7-204ENST00000571881 735 ntTSL 3 BASIC18.12■□□□□ 0.49
TRIM39Q9HCM9 FXYD7-203ENST00000586063 456 ntAPPRIS ALT2 TSL 3 BASIC18.12■□□□□ 0.49
TRIM39Q9HCM9 AC024563.2-201ENST00000603282 481 ntBASIC18.12■□□□□ 0.49
TRIM39Q9HCM9 CD24-206ENST00000620405 586 ntAPPRIS ALT2 TSL 2 BASIC18.12■□□□□ 0.49
TRIM39Q9HCM9 SIKE1-201ENST00000060969 2190 ntAPPRIS P3 TSL 1 (best) BASIC18.12■□□□□ 0.49
TRIM39Q9HCM9 TMEM79-203ENST00000405535 2201 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
TRIM39Q9HCM9 IFRD2-204ENST00000436390 2275 ntAPPRIS P1 TSL 2 BASIC18.12■□□□□ 0.49
TRIM39Q9HCM9 FAM72C-202ENST00000584486 2297 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
TRIM39Q9HCM9 CNNM3-202ENST00000377060 3308 ntTSL 2 BASIC18.12■□□□□ 0.49
TRIM39Q9HCM9 COX20-203ENST00000411948 2631 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
TRIM39Q9HCM9 CA7-202ENST00000394069 1713 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
TRIM39Q9HCM9 ESAM-201ENST00000278927 1826 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
TRIM39Q9HCM9 FZD10-202ENST00000539839 3282 ntBASIC18.11■□□□□ 0.49
TRIM39Q9HCM9 LRCH3-207ENST00000441090 2034 ntTSL 2 BASIC18.11■□□□□ 0.49
TRIM39Q9HCM9 SNX4-201ENST00000251775 2513 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
TRIM39Q9HCM9 WAC-202ENST00000347934 2839 ntTSL 5 BASIC18.11■□□□□ 0.49
TRIM39Q9HCM9 ATP10A-201ENST00000356865 6680 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
TRIM39Q9HCM9 AATK-203ENST00000417379 5081 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
TRIM39Q9HCM9 SCT-201ENST00000176195 366 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
TRIM39Q9HCM9 ISCA1-202ENST00000326094 1264 ntTSL 3 BASIC18.11■□□□□ 0.49
TRIM39Q9HCM9 BET1L-202ENST00000332865 533 ntTSL 5 BASIC18.11■□□□□ 0.49
TRIM39Q9HCM9 SMIM19-202ENST00000416469 691 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
TRIM39Q9HCM9 BECN2-201ENST00000419583 1296 ntAPPRIS P1 BASIC18.11■□□□□ 0.49
TRIM39Q9HCM9 PTX4-202ENST00000440447 1117 ntTSL 5 BASIC18.11■□□□□ 0.49
TRIM39Q9HCM9 PDZD7-203ENST00000470414 1057 ntTSL 2 BASIC18.11■□□□□ 0.49
TRIM39Q9HCM9 AC116353.4-201ENST00000507279 576 ntTSL 4 BASIC18.11■□□□□ 0.49
TRIM39Q9HCM9 AC026471.3-201ENST00000565137 578 ntTSL 2 BASIC18.11■□□□□ 0.49
TRIM39Q9HCM9 SLC9A3R2-208ENST00000566198 1199 ntTSL 2 BASIC18.11■□□□□ 0.49
TRIM39Q9HCM9 NAA38-203ENST00000575071 553 ntTSL 2 BASIC18.11■□□□□ 0.49
TRIM39Q9HCM9 LITAF-220ENST00000620789 692 ntTSL 5 BASIC18.11■□□□□ 0.49
TRIM39Q9HCM9 TRIM36-202ENST00000379617 1322 ntTSL 2 BASIC18.11■□□□□ 0.49
TRIM39Q9HCM9 IER3-202ENST00000376377 1350 ntBASIC18.11■□□□□ 0.49
TRIM39Q9HCM9 C5orf30-203ENST00000515669 1573 ntAPPRIS P1 TSL 3 BASIC18.11■□□□□ 0.49
TRIM39Q9HCM9 AC073592.3-201ENST00000625118 1834 ntBASIC18.11■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 24.4 ms