Protein–RNA interactions for Protein: Q9H239

MMP28, Matrix metalloproteinase-28, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28Q9H239 HNF1A-216ENST00000617366 2473 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
MMP28Q9H239 RPL7-202ENST00000396465 1308 ntTSL 3 BASIC16.18■□□□□ 0.18
MMP28Q9H239 KATNAL2-208ENST00000592005 1348 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
MMP28Q9H239 CHST10-201ENST00000264249 2842 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
MMP28Q9H239 PRODH-205ENST00000420436 2034 ntAPPRIS ALT2 TSL 2 BASIC16.18■□□□□ 0.18
MMP28Q9H239 ITSN2-201ENST00000355123 6300 ntAPPRIS P4 TSL 1 (best) BASIC16.17■□□□□ 0.18
MMP28Q9H239 KIAA1147-202ENST00000536163 7296 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
MMP28Q9H239 POLR3D-201ENST00000306433 1931 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
MMP28Q9H239 ACSS1-201ENST00000323482 3680 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
MMP28Q9H239 SLC2A8-202ENST00000373360 1937 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
MMP28Q9H239 ZYG11A-202ENST00000371532 3942 ntTSL 5 BASIC16.17■□□□□ 0.18
MMP28Q9H239 EXOSC3-201ENST00000327304 1806 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
MMP28Q9H239 MBD1-208ENST00000398493 1845 ntTSL 5 BASIC16.17■□□□□ 0.18
MMP28Q9H239 BAIAP2L2-201ENST00000332536 2065 ntAPPRIS ALT2 TSL 5 BASIC16.17■□□□□ 0.18
MMP28Q9H239 CAPN1-201ENST00000279247 3007 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
MMP28Q9H239 MAGED4-211ENST00000599522 2669 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
MMP28Q9H239 BRPF1-201ENST00000383829 4736 ntAPPRIS ALT1 TSL 1 (best) BASIC16.17■□□□□ 0.18
MMP28Q9H239 NPC1L1-203ENST00000423141 2554 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
MMP28Q9H239 HHIPL1-201ENST00000330710 7390 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
MMP28Q9H239 APOLD1-202ENST00000356591 4646 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
MMP28Q9H239 GRB7-201ENST00000309156 2243 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
MMP28Q9H239 DBN1-201ENST00000292385 3072 ntAPPRIS P4 TSL 1 (best) BASIC16.17■□□□□ 0.18
MMP28Q9H239 ST3GAL6-214ENST00000483910 1886 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
MMP28Q9H239 PRORSD1P-201ENST00000295112 541 ntBASIC16.17■□□□□ 0.18
MMP28Q9H239 MRAP-201ENST00000303645 935 ntAPPRIS P4 TSL 1 (best) BASIC16.17■□□□□ 0.18
MMP28Q9H239 TTC9B-201ENST00000311308 843 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
MMP28Q9H239 SERF1A-201ENST00000317633 963 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
MMP28Q9H239 TREX2-203ENST00000338525 2116 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
MMP28Q9H239 AC114730.1-201ENST00000400768 472 ntTSL 4 BASIC16.17■□□□□ 0.18
MMP28Q9H239 EP300-AS1-201ENST00000420537 457 ntTSL 3 BASIC16.17■□□□□ 0.18
MMP28Q9H239 STPG4-207ENST00000445927 891 ntAPPRIS P1 TSL 5 BASIC16.17■□□□□ 0.18
MMP28Q9H239 ABHD17AP6-201ENST00000458502 1044 ntBASIC16.17■□□□□ 0.18
MMP28Q9H239 EGFEM1P-209ENST00000502332 728 ntTSL 3 BASIC16.17■□□□□ 0.18
MMP28Q9H239 SOX15-202ENST00000538513 1050 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
MMP28Q9H239 AC105020.4-201ENST00000569467 563 ntTSL 4 BASIC16.17■□□□□ 0.18
MMP28Q9H239 SOX15-203ENST00000570788 1093 ntBASIC16.17■□□□□ 0.18
MMP28Q9H239 PRORSD1P-203ENST00000579162 626 ntTSL 5 BASIC16.17■□□□□ 0.18
MMP28Q9H239 C19orf25-213ENST00000592872 1287 ntAPPRIS P1 TSL 2 BASIC16.17■□□□□ 0.18
MMP28Q9H239 DBNL-219ENST00000490734 2004 ntTSL 2 BASIC16.17■□□□□ 0.18
MMP28Q9H239 CTPS2-201ENST00000359276 3629 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
MMP28Q9H239 DENND1A-202ENST00000373620 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
MMP28Q9H239 OTUB1-202ENST00000422031 2297 ntAPPRIS ALT1 TSL 5 BASIC16.17■□□□□ 0.18
MMP28Q9H239 SYVN1-203ENST00000377190 3052 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
MMP28Q9H239 SLCO6A1-202ENST00000389019 2340 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
MMP28Q9H239 NAIF1-201ENST00000373078 3399 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
MMP28Q9H239 FMR1-206ENST00000370477 3437 ntTSL 5 BASIC16.16■□□□□ 0.18
MMP28Q9H239 ADAM11-203ENST00000535346 2529 ntTSL 2 BASIC16.16■□□□□ 0.18
MMP28Q9H239 MOAP1-202ENST00000556883 2529 ntAPPRIS P1 TSL 2 BASIC16.16■□□□□ 0.18
MMP28Q9H239 PAX7-201ENST00000375375 2260 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
MMP28Q9H239 EIF3L-202ENST00000406934 2282 ntTSL 2 BASIC16.16■□□□□ 0.18
MMP28Q9H239 PCDHA8-202ENST00000531613 5260 ntAPPRIS P2 TSL 1 (best) BASIC16.16■□□□□ 0.18
MMP28Q9H239 CELF6-201ENST00000287202 3345 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
MMP28Q9H239 PYURF-201ENST00000273968 1361 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
MMP28Q9H239 DYNLL1-209ENST00000550845 1376 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
MMP28Q9H239 GALNT9-201ENST00000328957 2410 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
MMP28Q9H239 SNRPN-207ENST00000554227 1763 ntTSL 5 BASIC16.16■□□□□ 0.18
MMP28Q9H239 PPIF-201ENST00000225174 2190 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
MMP28Q9H239 ASCC2-223ENST00000542393 2594 ntTSL 2 BASIC16.16■□□□□ 0.18
MMP28Q9H239 PLEKHG6-203ENST00000396988 2963 ntAPPRIS P1 TSL 2 BASIC16.16■□□□□ 0.18
MMP28Q9H239 LAD1-201ENST00000367313 2336 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
MMP28Q9H239 TMEM119-201ENST00000392806 2707 ntAPPRIS P2 TSL 1 (best) BASIC16.16■□□□□ 0.18
MMP28Q9H239 ATXN2-201ENST00000377617 4702 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
MMP28Q9H239 TSPAN3-201ENST00000267970 6467 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
MMP28Q9H239 KDELC1-201ENST00000376004 2060 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
MMP28Q9H239 THAP7-201ENST00000215742 1213 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
MMP28Q9H239 CKLF-201ENST00000264001 669 ntAPPRIS P4 TSL 1 (best) BASIC16.16■□□□□ 0.18
MMP28Q9H239 CAVIN3-201ENST00000303927 1174 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
MMP28Q9H239 C10orf76-201ENST00000311122 724 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
MMP28Q9H239 DYNLRB1-203ENST00000374846 1044 ntTSL 5 BASIC16.16■□□□□ 0.18
MMP28Q9H239 MRPS26-201ENST00000380325 1127 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
MMP28Q9H239 SLC47A1P1-201ENST00000420951 500 ntTSL 5 BASIC16.16■□□□□ 0.18
MMP28Q9H239 TNIK-208ENST00000465393 750 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
MMP28Q9H239 TMEM263-203ENST00000547242 811 ntAPPRIS P1 TSL 2 BASIC16.16■□□□□ 0.18
MMP28Q9H239 AC113189.1-201ENST00000570444 327 ntTSL 3 BASIC16.16■□□□□ 0.18
MMP28Q9H239 EML2-AS1-202ENST00000591087 838 ntTSL 3 BASIC16.16■□□□□ 0.18
MMP28Q9H239 ADD3-AS1-204ENST00000627565 388 ntTSL 3 BASIC16.16■□□□□ 0.18
MMP28Q9H239 DNAJC11-201ENST00000294401 2210 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
MMP28Q9H239 MTX1-201ENST00000316721 1441 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
MMP28Q9H239 DVL1-202ENST00000378891 2926 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
MMP28Q9H239 WWTR1-201ENST00000360632 2103 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
MMP28Q9H239 SLC27A6-201ENST00000262462 3219 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
MMP28Q9H239 CSK-210ENST00000567571 2443 ntAPPRIS P1 TSL 2 BASIC16.16■□□□□ 0.18
MMP28Q9H239 WBP2-204ENST00000585462 1895 ntTSL 3 BASIC16.16■□□□□ 0.18
MMP28Q9H239 LRRC29-209ENST00000629962 1303 ntAPPRIS P1 TSL 5 BASIC16.16■□□□□ 0.18
MMP28Q9H239 PRSS36-207ENST00000569305 2723 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
MMP28Q9H239 CELF6-205ENST00000567083 1496 ntAPPRIS ALT2 TSL 2 BASIC16.16■□□□□ 0.18
MMP28Q9H239 ULK3-217ENST00000568667 1470 ntTSL 5 BASIC16.16■□□□□ 0.18
MMP28Q9H239 SMO-201ENST00000249373 3738 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
MMP28Q9H239 SAMD4A-204ENST00000554335 3003 ntAPPRIS P1 TSL 5 BASIC16.16■□□□□ 0.18
MMP28Q9H239 A4GALT-202ENST00000381278 1935 ntAPPRIS P1 TSL 5 BASIC16.15■□□□□ 0.18
MMP28Q9H239 EPHA10-201ENST00000319637 2050 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
MMP28Q9H239 MARVELD3-202ENST00000299952 2214 ntAPPRIS ALT2 TSL 2 BASIC16.15■□□□□ 0.18
MMP28Q9H239 ARHGEF16-202ENST00000378373 2211 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
MMP28Q9H239 CBS-202ENST00000359624 2353 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
MMP28Q9H239 CBSL-203ENST00000618024 2353 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
MMP28Q9H239 C2CD4C-201ENST00000332235 3129 ntAPPRIS P1 TSL 2 BASIC16.15■□□□□ 0.18
MMP28Q9H239 RTN1-201ENST00000267484 3435 ntAPPRIS P4 TSL 1 (best) BASIC16.15■□□□□ 0.18
MMP28Q9H239 AES-201ENST00000221561 1884 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
MMP28Q9H239 SYNE2-201ENST00000341472 1132 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
MMP28Q9H239 TTC8-202ENST00000345383 2329 ntTSL 5 BASIC16.15■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 23.6 ms