Protein–RNA interactions for Protein: Q99626

CDX2, Homeobox protein CDX-2, humanhuman

Predicted RBP Predictions only

Length 313 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX2Q99626 ELMOD1-202ENST00000443271 1990 ntAPPRIS P1 TSL 2 BASIC19.05■□□□□ 0.64
CDX2Q99626 C1QL3-201ENST00000298943 2493 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
CDX2Q99626 SPPL2B-212ENST00000618220 2459 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
CDX2Q99626 LTC4S-201ENST00000292596 666 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
CDX2Q99626 AL732437.1-201ENST00000442008 595 ntTSL 4 BASIC19.05■□□□□ 0.64
CDX2Q99626 HYAL1-206ENST00000447605 666 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
CDX2Q99626 PRYP5-201ENST00000451909 266 ntBASIC19.05■□□□□ 0.64
CDX2Q99626 FXYD1-202ENST00000455515 594 ntAPPRIS P1 TSL 2 BASIC19.05■□□□□ 0.64
CDX2Q99626 NDUFB2-202ENST00000460088 420 ntTSL 3 BASIC19.05■□□□□ 0.64
CDX2Q99626 AC106795.3-201ENST00000511650 547 ntTSL 4 BASIC19.05■□□□□ 0.64
CDX2Q99626 SMN2-210ENST00000511812 867 ntTSL 2 BASIC19.05■□□□□ 0.64
CDX2Q99626 GCHFR-204ENST00000559445 626 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
CDX2Q99626 FSTL3-207ENST00000605925 748 ntTSL 4 BASIC19.05■□□□□ 0.64
CDX2Q99626 Z94160.2-201ENST00000609322 910 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
CDX2Q99626 CITED2-204ENST00000618718 901 ntTSL 2 BASIC19.05■□□□□ 0.64
CDX2Q99626 SNHG28-203ENST00000621242 708 ntAPPRIS P1 TSL 5 BASIC19.05■□□□□ 0.64
CDX2Q99626 AC092902.2-205ENST00000622381 394 ntTSL 5 BASIC19.05■□□□□ 0.64
CDX2Q99626 NPAS4-204ENST00000639555 878 ntTSL 5 BASIC19.05■□□□□ 0.64
CDX2Q99626 PVRIG-201ENST00000317271 1583 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
CDX2Q99626 LARP4-210ENST00000522085 1577 ntTSL 2 BASIC19.05■□□□□ 0.64
CDX2Q99626 SLC22A17-211ENST00000637426 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC19.05■□□□□ 0.64
CDX2Q99626 CACNB3-205ENST00000547392 2237 ntTSL 5 BASIC19.05■□□□□ 0.64
CDX2Q99626 DMPK-205ENST00000458663 2548 ntTSL 5 BASIC19.05■□□□□ 0.64
CDX2Q99626 GLB1-202ENST00000307377 2018 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
CDX2Q99626 GADD45B-201ENST00000215631 1373 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
CDX2Q99626 EFEMP2-210ENST00000528176 1504 ntTSL 5 BASIC19.05■□□□□ 0.64
CDX2Q99626 MYBPH-201ENST00000255416 1805 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
CDX2Q99626 FOXA2-201ENST00000377115 2401 ntAPPRIS P3 TSL 1 (best) BASIC19.04■□□□□ 0.64
CDX2Q99626 ERGIC1-202ENST00000393784 2881 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
CDX2Q99626 AC008393.1-201ENST00000499601 1454 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
CDX2Q99626 LRRC23-201ENST00000007969 1615 ntAPPRIS P4 TSL 1 (best) BASIC19.04■□□□□ 0.64
CDX2Q99626 CBLN3-201ENST00000267406 2346 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
CDX2Q99626 LINC00266-1-201ENST00000279067 928 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
CDX2Q99626 HSD17B10-203ENST00000375304 916 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
CDX2Q99626 UGGT2-202ENST00000376714 1233 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
CDX2Q99626 IL32-205ENST00000396890 1067 ntAPPRIS ALT2 TSL 1 (best) BASIC19.04■□□□□ 0.64
CDX2Q99626 BLCAP-202ENST00000397131 633 ntAPPRIS P1 TSL 3 BASIC19.04■□□□□ 0.64
CDX2Q99626 BLCAP-203ENST00000397134 566 ntAPPRIS P1 TSL 4 BASIC19.04■□□□□ 0.64
CDX2Q99626 C17orf67-201ENST00000397861 2013 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
CDX2Q99626 ISOC2-203ENST00000438389 1566 ntTSL 2 BASIC19.04■□□□□ 0.64
CDX2Q99626 TSPY16P-201ENST00000449843 468 ntBASIC19.04■□□□□ 0.64
CDX2Q99626 PRKAG2-AS1-202ENST00000467458 1064 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
CDX2Q99626 IL32-223ENST00000534507 1112 ntAPPRIS ALT2 TSL 2 BASIC19.04■□□□□ 0.64
CDX2Q99626 NOP2-220ENST00000545915 630 ntTSL 2 BASIC19.04■□□□□ 0.64
CDX2Q99626 IL32-227ENST00000548652 812 ntAPPRIS ALT2 TSL 3 BASIC19.04■□□□□ 0.64
CDX2Q99626 IL32-233ENST00000552664 731 ntAPPRIS P4 TSL 3 BASIC19.04■□□□□ 0.64
CDX2Q99626 C1QTNF1-212ENST00000583904 1129 ntAPPRIS P1 TSL 4 BASIC19.04■□□□□ 0.64
CDX2Q99626 AC010503.2-201ENST00000599292 296 ntTSL 3 BASIC19.04■□□□□ 0.64
CDX2Q99626 UGGT2-212ENST00000621375 1004 ntTSL 5 BASIC19.04■□□□□ 0.64
CDX2Q99626 Z82202.1-201ENST00000623446 1880 ntBASIC19.04■□□□□ 0.64
CDX2Q99626 AC073592.4-201ENST00000623827 446 ntBASIC19.04■□□□□ 0.64
CDX2Q99626 UGGT2-213ENST00000638479 1010 ntTSL 5 BASIC19.04■□□□□ 0.64
CDX2Q99626 REV1-201ENST00000258428 4751 ntAPPRIS P3 TSL 1 (best) BASIC19.04■□□□□ 0.64
CDX2Q99626 FAM129C-211ENST00000600871 1822 ntAPPRIS ALT2 TSL 5 BASIC19.04■□□□□ 0.64
CDX2Q99626 CA11-201ENST00000084798 1844 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
CDX2Q99626 CAMKV-205ENST00000467248 1688 ntTSL 2 BASIC19.04■□□□□ 0.64
CDX2Q99626 TEX21P-204ENST00000641479 1693 ntBASIC19.04■□□□□ 0.64
CDX2Q99626 PPP4R2-201ENST00000356692 4984 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
CDX2Q99626 ZNF668-207ENST00000535577 2396 ntAPPRIS P1 TSL 5 BASIC19.04■□□□□ 0.64
CDX2Q99626 AP2M1-201ENST00000292807 1931 ntAPPRIS P4 TSL 5 BASIC19.04■□□□□ 0.64
CDX2Q99626 UBXN6-201ENST00000301281 1943 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
CDX2Q99626 C11orf49-201ENST00000278460 1645 ntAPPRIS P3 TSL 1 (best) BASIC19.03■□□□□ 0.64
CDX2Q99626 DHRS4L2-203ENST00000534993 1450 ntTSL 3 BASIC19.03■□□□□ 0.64
CDX2Q99626 BEST4-201ENST00000372207 2047 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
CDX2Q99626 SLC39A5-209ENST00000454355 1968 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
CDX2Q99626 LINC02028-204ENST00000449350 1419 ntTSL 3 BASIC19.03■□□□□ 0.64
CDX2Q99626 AL391422.3-201ENST00000603791 2761 ntBASIC19.03■□□□□ 0.64
CDX2Q99626 MBD1-208ENST00000398493 1845 ntTSL 5 BASIC19.03■□□□□ 0.64
CDX2Q99626 UBE2I-207ENST00000406620 1842 ntAPPRIS P1 TSL 2 BASIC19.03■□□□□ 0.64
CDX2Q99626 LINC00313-201ENST00000332440 579 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
CDX2Q99626 YIF1B-203ENST00000339413 1225 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
CDX2Q99626 HDAC8-202ENST00000373556 704 ntTSL 2 BASIC19.03■□□□□ 0.64
CDX2Q99626 C6orf48-204ENST00000375639 712 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
CDX2Q99626 MIR661-201ENST00000384842 89 ntBASIC19.03■□□□□ 0.64
CDX2Q99626 FAM159B-201ENST00000389074 847 ntAPPRIS P1 TSL 2 BASIC19.03■□□□□ 0.64
CDX2Q99626 TFAMP1-201ENST00000412727 736 ntBASIC19.03■□□□□ 0.64
CDX2Q99626 PTPA-213ENST00000419582 952 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
CDX2Q99626 SNHG11-204ENST00000420006 720 ntTSL 3 BASIC19.03■□□□□ 0.64
CDX2Q99626 SNHG11-206ENST00000432153 1181 ntTSL 3 BASIC19.03■□□□□ 0.64
CDX2Q99626 ATG10-207ENST00000513443 978 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
CDX2Q99626 NRK-203ENST00000536164 908 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
CDX2Q99626 AHSA1-208ENST00000555517 832 ntTSL 2 BASIC19.03■□□□□ 0.64
CDX2Q99626 ECSIT-207ENST00000588998 818 ntTSL 3 BASIC19.03■□□□□ 0.64
CDX2Q99626 GRIFIN-202ENST00000614228 461 ntAPPRIS P1 TSL 5 BASIC19.03■□□□□ 0.64
CDX2Q99626 AC004790.2-201ENST00000623588 572 ntBASIC19.03■□□□□ 0.64
CDX2Q99626 NR1H2-210ENST00000598168 1915 ntAPPRIS ALT2 TSL 5 BASIC19.03■□□□□ 0.64
CDX2Q99626 RBFOX1-207ENST00000547338 1513 ntTSL 2 BASIC19.03■□□□□ 0.64
CDX2Q99626 IQCJ-SCHIP1-204ENST00000485419 2445 ntAPPRIS ALT2 TSL 2 BASIC19.03■□□□□ 0.64
CDX2Q99626 FBXL16-203ENST00000562563 2257 ntTSL 2 BASIC19.03■□□□□ 0.64
CDX2Q99626 ULK3-217ENST00000568667 1470 ntTSL 5 BASIC19.03■□□□□ 0.64
CDX2Q99626 KCNK4-207ENST00000539216 1723 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
CDX2Q99626 BCAR1-209ENST00000546196 1340 ntBASIC19.02■□□□□ 0.64
CDX2Q99626 KLHL21-206ENST00000610898 1945 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
CDX2Q99626 GMPPA-202ENST00000341142 1524 ntAPPRIS P1 TSL 5 BASIC19.02■□□□□ 0.64
CDX2Q99626 THOC7-201ENST00000295899 990 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
CDX2Q99626 VMO1-202ENST00000354194 651 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
CDX2Q99626 HEBP2-202ENST00000448741 661 ntTSL 5 BASIC19.02■□□□□ 0.64
CDX2Q99626 AC023141.5-201ENST00000458585 616 ntBASIC19.02■□□□□ 0.64
CDX2Q99626 SLBP-205ENST00000488267 987 ntTSL 2 BASIC19.02■□□□□ 0.64
CDX2Q99626 H2AFJ-203ENST00000544848 644 ntAPPRIS P1 BASIC19.02■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 29.1 ms