Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 SH3BP1-201ENST00000357436 2852 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
VPS13AQ96RL7 KIAA0895-204ENST00000415803 2865 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
VPS13AQ96RL7 KATNBL1P6-202ENST00000562413 1466 ntBASIC18.04■□□□□ 0.48
VPS13AQ96RL7 UBE2I-207ENST00000406620 1842 ntAPPRIS P1 TSL 2 BASIC18.04■□□□□ 0.48
VPS13AQ96RL7 SNAP23-202ENST00000349777 2480 ntTSL 2 BASIC18.04■□□□□ 0.48
VPS13AQ96RL7 RDH13-203ENST00000415061 1871 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
VPS13AQ96RL7 SUSD4-203ENST00000344029 1056 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
VPS13AQ96RL7 AC092809.2-202ENST00000436706 790 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
VPS13AQ96RL7 STAC3-201ENST00000332782 1656 ntAPPRIS P1 TSL 2 BASIC18.04■□□□□ 0.48
VPS13AQ96RL7 CCDC50-202ENST00000392456 2454 ntAPPRIS P4 TSL 1 (best) BASIC18.04■□□□□ 0.48
VPS13AQ96RL7 SERBP1-201ENST00000361219 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC18.04■□□□□ 0.48
VPS13AQ96RL7 WNT10A-201ENST00000258411 2547 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
VPS13AQ96RL7 TMEM44-203ENST00000381975 2197 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
VPS13AQ96RL7 DNAJC28-203ENST00000402202 1480 ntAPPRIS P1 TSL 5 BASIC18.04■□□□□ 0.48
VPS13AQ96RL7 IL17RE-206ENST00000454190 2757 ntTSL 2 BASIC18.04■□□□□ 0.48
VPS13AQ96RL7 AL158211.5-201ENST00000623583 2518 ntBASIC18.03■□□□□ 0.48
VPS13AQ96RL7 NKAIN2-201ENST00000368416 1106 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
VPS13AQ96RL7 PNRC2-202ENST00000374468 814 ntAPPRIS P1 TSL 2 BASIC18.03■□□□□ 0.48
VPS13AQ96RL7 CLDN7-202ENST00000397317 1228 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
VPS13AQ96RL7 CAMKMT-204ENST00000407131 652 ntTSL 3 BASIC18.03■□□□□ 0.48
VPS13AQ96RL7 MKNK2P1-201ENST00000437526 628 ntBASIC18.03■□□□□ 0.48
VPS13AQ96RL7 DDIT4-AS1-201ENST00000491934 847 ntTSL 5 BASIC18.03■□□□□ 0.48
VPS13AQ96RL7 RNF34-208ENST00000555076 593 ntTSL 3 BASIC18.03■□□□□ 0.48
VPS13AQ96RL7 AC005225.4-201ENST00000557330 545 ntBASIC18.03■□□□□ 0.48
VPS13AQ96RL7 ETFA-208ENST00000559602 792 ntTSL 3 BASIC18.03■□□□□ 0.48
VPS13AQ96RL7 FAM187A-202ENST00000412523 1748 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
VPS13AQ96RL7 PABPC1L2B-201ENST00000373521 2197 ntAPPRIS P1 BASIC18.03■□□□□ 0.48
VPS13AQ96RL7 LINC00304-201ENST00000321214 2243 ntTSL 2 BASIC18.03■□□□□ 0.48
VPS13AQ96RL7 STMN3-201ENST00000370053 2255 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
VPS13AQ96RL7 SLC35B1-201ENST00000240333 1850 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
VPS13AQ96RL7 PLD4-204ENST00000540372 2007 ntAPPRIS ALT2 TSL 2 BASIC18.03■□□□□ 0.48
VPS13AQ96RL7 RDX-202ENST00000405097 2761 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
VPS13AQ96RL7 DVL3-203ENST00000431765 2294 ntTSL 5 BASIC18.03■□□□□ 0.48
VPS13AQ96RL7 SLC25A47-201ENST00000361529 1738 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
VPS13AQ96RL7 SNCA-205ENST00000394991 1290 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
VPS13AQ96RL7 PDCD6-207ENST00000509581 1156 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
VPS13AQ96RL7 AC055854.1-201ENST00000523627 570 ntTSL 4 BASIC18.03■□□□□ 0.48
VPS13AQ96RL7 TUBB3-205ENST00000554336 903 ntTSL 3 BASIC18.03■□□□□ 0.48
VPS13AQ96RL7 AC114488.2-214ENST00000609033 813 ntTSL 5 BASIC18.03■□□□□ 0.48
VPS13AQ96RL7 CBR3-AS1-216ENST00000624883 564 ntTSL 3 BASIC18.03■□□□□ 0.48
VPS13AQ96RL7 TH-206ENST00000381178 1910 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
VPS13AQ96RL7 RSPO1-201ENST00000356545 2621 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
VPS13AQ96RL7 VOPP1-201ENST00000285279 2962 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
VPS13AQ96RL7 MBD1-208ENST00000398493 1845 ntTSL 5 BASIC18.03■□□□□ 0.48
VPS13AQ96RL7 ANKRD65-201ENST00000427211 1976 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
VPS13AQ96RL7 MRPL2-201ENST00000230413 899 ntTSL 2 BASIC18.03■□□□□ 0.48
VPS13AQ96RL7 AC026191.1-201ENST00000491930 829 ntTSL 3 BASIC18.03■□□□□ 0.48
VPS13AQ96RL7 COX5A-206ENST00000568783 571 ntTSL 3 BASIC18.03■□□□□ 0.48
VPS13AQ96RL7 FAM57A-205ENST00000572018 373 ntTSL 3 BASIC18.03■□□□□ 0.48
VPS13AQ96RL7 ANKRD20A8P-203ENST00000641373 517 ntBASIC18.03■□□□□ 0.48
VPS13AQ96RL7 KRT13-201ENST00000246635 1699 ntAPPRIS P4 TSL 1 (best) BASIC18.03■□□□□ 0.48
VPS13AQ96RL7 MCIDAS-201ENST00000513312 1736 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
VPS13AQ96RL7 TRIM46-204ENST00000368385 1864 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
VPS13AQ96RL7 ZNF420-201ENST00000304239 1945 ntTSL 2 BASIC18.03■□□□□ 0.48
VPS13AQ96RL7 DIO3OS-212ENST00000557661 1937 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
VPS13AQ96RL7 OGG1-202ENST00000302008 2191 ntAPPRIS ALT2 TSL 5 BASIC18.03■□□□□ 0.48
VPS13AQ96RL7 ZNF12-201ENST00000342651 2921 ntAPPRIS ALT2 TSL 2 BASIC18.02■□□□□ 0.48
VPS13AQ96RL7 RASSF1-201ENST00000327761 1757 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
VPS13AQ96RL7 PIF1-202ENST00000333425 2278 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
VPS13AQ96RL7 RGS11-203ENST00000359740 1371 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
VPS13AQ96RL7 LINC01336-202ENST00000506086 479 ntTSL 5 BASIC18.02■□□□□ 0.48
VPS13AQ96RL7 ADA-207ENST00000537820 1128 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
VPS13AQ96RL7 AP006333.1-201ENST00000543817 575 ntTSL 4 BASIC18.02■□□□□ 0.48
VPS13AQ96RL7 AC015712.1-203ENST00000559331 593 ntTSL 3 BASIC18.02■□□□□ 0.48
VPS13AQ96RL7 AC105339.3-201ENST00000560043 636 ntBASIC18.02■□□□□ 0.48
VPS13AQ96RL7 KRT81-202ENST00000615839 1505 ntAPPRIS ALT2 TSL 5 BASIC18.02■□□□□ 0.48
VPS13AQ96RL7 SLC35B2-207ENST00000619636 2063 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
VPS13AQ96RL7 TM7SF3-201ENST00000343028 2709 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
VPS13AQ96RL7 KANK3-203ENST00000593649 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.48
VPS13AQ96RL7 SLC22A1-201ENST00000324965 1521 ntTSL 5 BASIC18.02■□□□□ 0.48
VPS13AQ96RL7 ATP1B1-202ENST00000367816 2608 ntAPPRIS P1 TSL 5 BASIC18.02■□□□□ 0.48
VPS13AQ96RL7 MRPL16-201ENST00000300151 1182 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
VPS13AQ96RL7 LAGE3P1-201ENST00000425356 484 ntBASIC18.02■□□□□ 0.48
VPS13AQ96RL7 HYPK-202ENST00000442995 1051 ntAPPRIS P2 TSL 1 (best) BASIC18.02■□□□□ 0.48
VPS13AQ96RL7 ITGA9-AS1-209ENST00000450990 562 ntTSL 4 BASIC18.02■□□□□ 0.48
VPS13AQ96RL7 DUX4L17-201ENST00000557360 1267 ntBASIC18.02■□□□□ 0.48
VPS13AQ96RL7 AC087641.1-201ENST00000557561 1021 ntBASIC18.02■□□□□ 0.48
VPS13AQ96RL7 AC010336.3-201ENST00000597156 667 ntTSL 2 BASIC18.02■□□□□ 0.48
VPS13AQ96RL7 GOSR2-226ENST00000639287 2367 ntTSL 5 BASIC18.02■□□□□ 0.48
VPS13AQ96RL7 COL4A3BP-201ENST00000261415 2262 ntTSL 1 (best) BASIC18.02■□□□□ 0.47
VPS13AQ96RL7 IFRD2-202ENST00000417626 2109 ntTSL 1 (best) BASIC18.02■□□□□ 0.47
VPS13AQ96RL7 MAP3K11-210ENST00000532507 1812 ntTSL 2 BASIC18.02■□□□□ 0.47
VPS13AQ96RL7 PLD6-201ENST00000321560 2560 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
VPS13AQ96RL7 FBXL15-202ENST00000369956 2344 ntAPPRIS ALT1 TSL 1 (best) BASIC18.02■□□□□ 0.47
VPS13AQ96RL7 AP2M1-201ENST00000292807 1931 ntAPPRIS P4 TSL 5 BASIC18.01■□□□□ 0.47
VPS13AQ96RL7 DNAJC4-203ENST00000355040 759 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
VPS13AQ96RL7 TRAPPC3-203ENST00000373163 951 ntTSL 3 BASIC18.01■□□□□ 0.47
VPS13AQ96RL7 ADARB2-201ENST00000381305 703 ntTSL 2 BASIC18.01■□□□□ 0.47
VPS13AQ96RL7 TSEN15P1-201ENST00000423257 515 ntBASIC18.01■□□□□ 0.47
VPS13AQ96RL7 TNFRSF13B-203ENST00000579315 600 ntAPPRIS ALT2 TSL 3 BASIC18.01■□□□□ 0.47
VPS13AQ96RL7 ANGPTL4-201ENST00000301455 1879 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
VPS13AQ96RL7 EARS2-206ENST00000563232 1709 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
VPS13AQ96RL7 NRG2-204ENST00000358522 2559 ntAPPRIS P5 TSL 1 (best) BASIC18.01■□□□□ 0.47
VPS13AQ96RL7 AC063926.2-201ENST00000623766 1308 ntBASIC18.01■□□□□ 0.47
VPS13AQ96RL7 SYT17-207ENST00000568115 1721 ntTSL 5 BASIC18.01■□□□□ 0.47
VPS13AQ96RL7 LINC00466-207ENST00000634725 1736 ntTSL 5 BASIC18.01■□□□□ 0.47
VPS13AQ96RL7 TRAPPC1-201ENST00000303731 811 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
VPS13AQ96RL7 LCN2-203ENST00000373017 848 ntAPPRIS P2 TSL 5 BASIC18.01■□□□□ 0.47
VPS13AQ96RL7 AC073621.1-201ENST00000392730 636 ntBASIC18.01■□□□□ 0.47
VPS13AQ96RL7 BLCAP-202ENST00000397131 633 ntAPPRIS P1 TSL 3 BASIC18.01■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 27 ms