Protein–RNA interactions for Protein: Q96BD8

SKA1, Spindle and kinetochore-associated protein 1, humanhuman

Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1Q96BD8 DDX42-202ENST00000389924 3939 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
SKA1Q96BD8 VOPP1-201ENST00000285279 2962 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
SKA1Q96BD8 ZNF446-207ENST00000610298 1869 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
SKA1Q96BD8 SMARCC1-201ENST00000254480 6375 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
SKA1Q96BD8 ATXN7L2-202ENST00000369870 2318 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
SKA1Q96BD8 PKMYT1-203ENST00000431515 2308 ntTSL 2 BASIC18.79■□□□□ 0.6
SKA1Q96BD8 TCTN1-225ENST00000551590 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
SKA1Q96BD8 NARFL-218ENST00000568545 2486 ntTSL 2 BASIC18.79■□□□□ 0.6
SKA1Q96BD8 PANX1-201ENST00000227638 2769 ntAPPRIS P2 TSL 1 (best) BASIC18.79■□□□□ 0.6
SKA1Q96BD8 FAM53A-207ENST00000489363 2776 ntTSL 2 BASIC18.79■□□□□ 0.6
SKA1Q96BD8 PER3-203ENST00000377541 1524 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
SKA1Q96BD8 AC138028.1-201ENST00000333666 2137 ntTSL 2 BASIC18.79■□□□□ 0.6
SKA1Q96BD8 TFEB-201ENST00000230323 2354 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
SKA1Q96BD8 DNAJC11-201ENST00000294401 2210 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
SKA1Q96BD8 NAT6-204ENST00000443094 1464 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
SKA1Q96BD8 GOLGA6L2-204ENST00000567107 3030 ntAPPRIS P2 TSL 5 BASIC18.78■□□□□ 0.6
SKA1Q96BD8 ANO7L1-203ENST00000602586 1720 ntBASIC18.78■□□□□ 0.6
SKA1Q96BD8 TLE3-226ENST00000627388 5742 ntAPPRIS ALT1 TSL 5 BASIC18.78■□□□□ 0.6
SKA1Q96BD8 ACY1-206ENST00000476351 1409 ntTSL 3 BASIC18.78■□□□□ 0.6
SKA1Q96BD8 C20orf196-201ENST00000303142 1154 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
SKA1Q96BD8 LINC01785-201ENST00000598042 1112 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
SKA1Q96BD8 BCL2L12-208ENST00000600947 633 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
SKA1Q96BD8 AC215522.2-202ENST00000633163 1143 ntTSL 5 BASIC18.78■□□□□ 0.6
SKA1Q96BD8 CASR-204ENST00000638421 5088 ntAPPRIS P1 TSL 5 BASIC18.78■□□□□ 0.6
SKA1Q96BD8 ITGA6-201ENST00000264107 5618 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
SKA1Q96BD8 HOXB8-201ENST00000239144 1823 ntAPPRIS P2 TSL 2 BASIC18.78■□□□□ 0.6
SKA1Q96BD8 NOP9-202ENST00000396802 1942 ntTSL 5 BASIC18.78■□□□□ 0.6
SKA1Q96BD8 STXBP2-203ENST00000441779 1914 ntTSL 2 BASIC18.78■□□□□ 0.6
SKA1Q96BD8 CCNA1-202ENST00000440264 1758 ntAPPRIS P1 TSL 2 BASIC18.78■□□□□ 0.6
SKA1Q96BD8 FZD10-202ENST00000539839 3282 ntBASIC18.78■□□□□ 0.6
SKA1Q96BD8 TNFRSF19-202ENST00000382258 1625 ntAPPRIS P4 TSL 1 (best) BASIC18.78■□□□□ 0.6
SKA1Q96BD8 FSTL1-201ENST00000295633 5943 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
SKA1Q96BD8 RABEP2-202ENST00000358201 2821 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
SKA1Q96BD8 HAUS4-217ENST00000555367 1454 ntTSL 5 BASIC18.77■□□□□ 0.6
SKA1Q96BD8 UTP18-201ENST00000225298 1894 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
SKA1Q96BD8 AK1-203ENST00000373176 2266 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
SKA1Q96BD8 TRIM33-202ENST00000369543 3457 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
SKA1Q96BD8 CRHR2-207ENST00000471646 2530 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
SKA1Q96BD8 GABRD-205ENST00000638771 1707 ntAPPRIS ALT2 TSL 3 BASIC18.77■□□□□ 0.6
SKA1Q96BD8 C8orf58-207ENST00000615223 1848 ntAPPRIS ALT2 TSL 5 BASIC18.77■□□□□ 0.6
SKA1Q96BD8 LINC01311-201ENST00000565162 1445 ntBASIC18.77■□□□□ 0.6
SKA1Q96BD8 AC126773.2-201ENST00000562172 1682 ntTSL 3 BASIC18.77■□□□□ 0.6
SKA1Q96BD8 KANSL1L-203ENST00000418791 3562 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
SKA1Q96BD8 TMEM171-201ENST00000287773 1247 ntAPPRIS ALT1 TSL 5 BASIC18.77■□□□□ 0.6
SKA1Q96BD8 IPPK-202ENST00000375522 882 ntTSL 3 BASIC18.77■□□□□ 0.6
SKA1Q96BD8 CNTD2-203ENST00000513948 787 ntAPPRIS ALT2 TSL 2 BASIC18.77■□□□□ 0.6
SKA1Q96BD8 GCSHP2-201ENST00000560971 527 ntBASIC18.77■□□□□ 0.6
SKA1Q96BD8 AC064834.1-201ENST00000606986 503 ntTSL 3 BASIC18.77■□□□□ 0.6
SKA1Q96BD8 SLC39A1-209ENST00000537590 2022 ntTSL 2 BASIC18.77■□□□□ 0.6
SKA1Q96BD8 TRIM47-201ENST00000254816 2266 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
SKA1Q96BD8 SYNM-204ENST00000594047 6407 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
SKA1Q96BD8 ZC3H12D-201ENST00000409806 5791 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
SKA1Q96BD8 EMD-202ENST00000369842 1379 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
SKA1Q96BD8 BAIAP2L2-202ENST00000381669 2146 ntAPPRIS P2 TSL 1 (best) BASIC18.77■□□□□ 0.6
SKA1Q96BD8 METTL5-207ENST00000410097 1370 ntTSL 2 BASIC18.77■□□□□ 0.6
SKA1Q96BD8 FAM228B-210ENST00000615575 1357 ntAPPRIS P3 TSL 5 BASIC18.77■□□□□ 0.6
SKA1Q96BD8 HEXDC-201ENST00000327949 1733 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
SKA1Q96BD8 CASD1-201ENST00000297273 3942 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
SKA1Q96BD8 HEXDC-203ENST00000577944 1820 ntTSL 5 BASIC18.77■□□□□ 0.59
SKA1Q96BD8 TXNRD3-205ENST00000640797 1824 ntAPPRIS ALT2 TSL 2 BASIC18.77■□□□□ 0.59
SKA1Q96BD8 AC135782.1-201ENST00000537498 2154 ntTSL 2 BASIC18.76■□□□□ 0.59
SKA1Q96BD8 TDRP-201ENST00000324079 3395 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
SKA1Q96BD8 ALDH3B1-206ENST00000615463 1300 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
SKA1Q96BD8 ACBD4-215ENST00000592162 1684 ntTSL 5 BASIC18.76■□□□□ 0.59
SKA1Q96BD8 ATP1B1-202ENST00000367816 2608 ntAPPRIS P1 TSL 5 BASIC18.76■□□□□ 0.59
SKA1Q96BD8 STX6-201ENST00000258301 4851 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
SKA1Q96BD8 FBXL15-201ENST00000224862 2362 ntAPPRIS P2 TSL 1 (best) BASIC18.76■□□□□ 0.59
SKA1Q96BD8 ELP5-204ENST00000396628 1423 ntAPPRIS P2 TSL 1 (best) BASIC18.76■□□□□ 0.59
SKA1Q96BD8 TBX20-201ENST00000408931 1871 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
SKA1Q96BD8 RIMKLB-202ENST00000357529 5830 ntAPPRIS P1 TSL 5 BASIC18.76■□□□□ 0.59
SKA1Q96BD8 KRTAP5-11-201ENST00000398530 1021 ntAPPRIS P2 BASIC18.76■□□□□ 0.59
SKA1Q96BD8 HCG4P8-203ENST00000443049 980 ntBASIC18.76■□□□□ 0.59
SKA1Q96BD8 KRT18P38-201ENST00000449496 1282 ntBASIC18.76■□□□□ 0.59
SKA1Q96BD8 DGUOK-AS1-203ENST00000453103 601 ntTSL 3 BASIC18.76■□□□□ 0.59
SKA1Q96BD8 EHMT1-211ENST00000482340 691 ntTSL 5 BASIC18.76■□□□□ 0.59
SKA1Q96BD8 AC138207.7-201ENST00000584499 668 ntTSL 5 BASIC18.76■□□□□ 0.59
SKA1Q96BD8 AC016582.2-201ENST00000591908 446 ntTSL 3 BASIC18.76■□□□□ 0.59
SKA1Q96BD8 AC004076.1-201ENST00000596831 664 ntAPPRIS P1 TSL 2 BASIC18.76■□□□□ 0.59
SKA1Q96BD8 KLK7-206ENST00000597707 1054 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
SKA1Q96BD8 FGF14-AS2-201ENST00000606448 1074 ntBASIC18.76■□□□□ 0.59
SKA1Q96BD8 NDUFV2-AS1-203ENST00000608008 779 ntBASIC18.76■□□□□ 0.59
SKA1Q96BD8 GPX4-210ENST00000611653 793 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
SKA1Q96BD8 USP25-204ENST00000400183 5341 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
SKA1Q96BD8 BTBD11-201ENST00000280758 5767 ntAPPRIS P3 TSL 5 BASIC18.76■□□□□ 0.59
SKA1Q96BD8 CD276-203ENST00000537340 2439 ntTSL 2 BASIC18.76■□□□□ 0.59
SKA1Q96BD8 TTLL8-201ENST00000266182 2505 ntAPPRIS ALT2 TSL 5 BASIC18.76■□□□□ 0.59
SKA1Q96BD8 CREG2-201ENST00000324768 6383 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
SKA1Q96BD8 SCYL1-203ENST00000420247 2583 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
SKA1Q96BD8 MYO9A-214ENST00000566885 5111 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
SKA1Q96BD8 DSCAM-201ENST00000400454 8552 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
SKA1Q96BD8 UBE3C-201ENST00000348165 5229 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
SKA1Q96BD8 SLC35A3-224ENST00000640732 1777 ntTSL 5 BASIC18.76■□□□□ 0.59
SKA1Q96BD8 GFY-201ENST00000576655 1876 ntAPPRIS P1 TSL 5 BASIC18.75■□□□□ 0.59
SKA1Q96BD8 MARK1-202ENST00000366918 5169 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
SKA1Q96BD8 TMPRSS5-205ENST00000538955 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
SKA1Q96BD8 PRRT2-212ENST00000636619 2065 ntTSL 5 BASIC18.75■□□□□ 0.59
SKA1Q96BD8 CXorf40A-208ENST00000434353 1524 ntAPPRIS ALT1 TSL 5 BASIC18.75■□□□□ 0.59
SKA1Q96BD8 UNC5B-201ENST00000335350 6841 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
SKA1Q96BD8 MEGF9-201ENST00000373930 6298 ntAPPRIS P1 TSL 2 BASIC18.75■□□□□ 0.59
SKA1Q96BD8 SPON2-203ENST00000431380 1802 ntAPPRIS P1 TSL 5 BASIC18.75■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 40.7 ms