Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 AC093714.2-201ENST00000489626 763 ntTSL 3 BASIC21.65■■□□□ 1.06
SMC1BQ8NDV3 LINC02199-203ENST00000510229 496 ntTSL 3 BASIC21.65■■□□□ 1.06
SMC1BQ8NDV3 STT3A-AS1-201ENST00000530526 429 ntTSL 3 BASIC21.65■■□□□ 1.06
SMC1BQ8NDV3 AC005225.4-201ENST00000557330 545 ntBASIC21.65■■□□□ 1.06
SMC1BQ8NDV3 DUX4L17-201ENST00000557360 1267 ntBASIC21.65■■□□□ 1.06
SMC1BQ8NDV3 CYGB-205ENST00000590175 830 ntTSL 3 BASIC21.65■■□□□ 1.06
SMC1BQ8NDV3 AC006557.2-201ENST00000592985 1240 ntBASIC21.65■■□□□ 1.06
SMC1BQ8NDV3 AC005498.2-205ENST00000593218 784 ntBASIC21.65■■□□□ 1.06
SMC1BQ8NDV3 MRPL34-205ENST00000600434 793 ntAPPRIS P2 TSL 3 BASIC21.65■■□□□ 1.06
SMC1BQ8NDV3 ADGRL1-202ENST00000361434 5610 ntAPPRIS P3 TSL 1 (best) BASIC21.65■■□□□ 1.06
SMC1BQ8NDV3 HEIH-201ENST00000623091 1652 ntBASIC21.65■■□□□ 1.06
SMC1BQ8NDV3 BAIAP2L2-202ENST00000381669 2146 ntAPPRIS P2 TSL 1 (best) BASIC21.65■■□□□ 1.06
SMC1BQ8NDV3 ANKRD13D-216ENST00000514166 2138 ntTSL 2 BASIC21.65■■□□□ 1.06
SMC1BQ8NDV3 C2CD2-202ENST00000380486 6345 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
SMC1BQ8NDV3 MTMR12-203ENST00000382142 5187 ntAPPRIS P3 TSL 1 (best) BASIC21.65■■□□□ 1.06
SMC1BQ8NDV3 FAM193B-217ENST00000514747 2913 ntAPPRIS P1 TSL 5 BASIC21.65■■□□□ 1.06
SMC1BQ8NDV3 UBAP1-204ENST00000625521 2029 ntTSL 2 BASIC21.65■■□□□ 1.06
SMC1BQ8NDV3 AP005233.1-201ENST00000562341 2424 ntTSL 2 BASIC21.65■■□□□ 1.06
SMC1BQ8NDV3 GPSM3-206ENST00000375040 1476 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
SMC1BQ8NDV3 TSPAN4-204ENST00000397404 1462 ntAPPRIS P1 TSL 5 BASIC21.64■■□□□ 1.06
SMC1BQ8NDV3 LPCAT4-201ENST00000314891 2262 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
SMC1BQ8NDV3 AC125634.1-201ENST00000438758 1403 ntBASIC21.64■■□□□ 1.06
SMC1BQ8NDV3 ADGRB1-201ENST00000323289 5527 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
SMC1BQ8NDV3 PIP5K1C-201ENST00000335312 5080 ntAPPRIS P3 TSL 1 (best) BASIC21.64■■□□□ 1.05
SMC1BQ8NDV3 SETD6-202ENST00000310682 2042 ntAPPRIS P3 TSL 2 BASIC21.64■■□□□ 1.05
SMC1BQ8NDV3 PKM-215ENST00000565154 2004 ntAPPRIS ALT1 TSL 2 BASIC21.64■■□□□ 1.05
SMC1BQ8NDV3 NDUFAF2-201ENST00000296597 719 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
SMC1BQ8NDV3 NKX2-6-201ENST00000325017 906 ntAPPRIS P1 TSL 2 BASIC21.64■■□□□ 1.05
SMC1BQ8NDV3 TMEM59-202ENST00000371337 600 ntTSL 2 BASIC21.64■■□□□ 1.05
SMC1BQ8NDV3 ZNF655-215ENST00000440391 1198 ntTSL 2 BASIC21.64■■□□□ 1.05
SMC1BQ8NDV3 BX890604.1-208ENST00000490920 726 ntTSL 2 BASIC21.64■■□□□ 1.05
SMC1BQ8NDV3 AC113404.2-201ENST00000507884 177 ntBASIC21.64■■□□□ 1.05
SMC1BQ8NDV3 CCND3-213ENST00000510503 1257 ntTSL 3 BASIC21.64■■□□□ 1.05
SMC1BQ8NDV3 AP000344.2-201ENST00000512987 629 ntBASIC21.64■■□□□ 1.05
SMC1BQ8NDV3 PUS1-205ENST00000535067 838 ntTSL 3 BASIC21.64■■□□□ 1.05
SMC1BQ8NDV3 RPL28-205ENST00000558131 444 ntTSL 5 BASIC21.64■■□□□ 1.05
SMC1BQ8NDV3 LMO4-202ENST00000370544 5405 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
SMC1BQ8NDV3 DAPK3-202ENST00000545797 2257 ntAPPRIS P1 TSL 2 BASIC21.64■■□□□ 1.05
SMC1BQ8NDV3 EGFR-202ENST00000342916 2239 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
SMC1BQ8NDV3 TMEM163-201ENST00000281924 1892 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
SMC1BQ8NDV3 ELMOD1-206ENST00000531234 1832 ntTSL 2 BASIC21.64■■□□□ 1.05
SMC1BQ8NDV3 AVPR2-202ENST00000358927 1763 ntAPPRIS P1 TSL 5 BASIC21.64■■□□□ 1.05
SMC1BQ8NDV3 NRN1-204ENST00000622188 1795 ntTSL 2 BASIC21.64■■□□□ 1.05
SMC1BQ8NDV3 VGLL4-210ENST00000426568 1428 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
SMC1BQ8NDV3 ADCK2-201ENST00000072869 2377 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
SMC1BQ8NDV3 RRS1-201ENST00000320270 1706 ntAPPRIS P1 BASIC21.63■■□□□ 1.05
SMC1BQ8NDV3 FUCA1-201ENST00000374479 2047 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
SMC1BQ8NDV3 PDLIM7-202ENST00000355841 1689 ntAPPRIS P4 TSL 1 (best) BASIC21.63■■□□□ 1.05
SMC1BQ8NDV3 LGI2-201ENST00000382114 6428 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
SMC1BQ8NDV3 IMPDH1-208ENST00000470772 1888 ntAPPRIS ALT1 TSL 5 BASIC21.63■■□□□ 1.05
SMC1BQ8NDV3 SEPT11-209ENST00000510515 1886 ntTSL 2 BASIC21.63■■□□□ 1.05
SMC1BQ8NDV3 GGT1-207ENST00000404532 853 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
SMC1BQ8NDV3 CRYGEP-201ENST00000412192 528 ntBASIC21.63■■□□□ 1.05
SMC1BQ8NDV3 RNF144A-AS1-205ENST00000439208 757 ntTSL 3 BASIC21.63■■□□□ 1.05
SMC1BQ8NDV3 SRP19-202ENST00000445150 833 ntTSL 2 BASIC21.63■■□□□ 1.05
SMC1BQ8NDV3 AP000344.1-201ENST00000454268 641 ntTSL 5 BASIC21.63■■□□□ 1.05
SMC1BQ8NDV3 AP000344.1-202ENST00000457193 586 ntTSL 4 BASIC21.63■■□□□ 1.05
SMC1BQ8NDV3 OR5AH1P-202ENST00000597822 431 ntTSL 3 BASIC21.63■■□□□ 1.05
SMC1BQ8NDV3 PRR16-201ENST00000379551 1826 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
SMC1BQ8NDV3 KRT81-202ENST00000615839 1505 ntAPPRIS ALT2 TSL 5 BASIC21.63■■□□□ 1.05
SMC1BQ8NDV3 TFAP2A-202ENST00000379608 2576 ntAPPRIS ALT1 TSL 1 (best) BASIC21.63■■□□□ 1.05
SMC1BQ8NDV3 ZYG11B-202ENST00000545132 2294 ntTSL 2 BASIC21.63■■□□□ 1.05
SMC1BQ8NDV3 PALM-208ENST00000592155 2272 ntTSL 4 BASIC21.63■■□□□ 1.05
SMC1BQ8NDV3 ME2-202ENST00000382927 2492 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
SMC1BQ8NDV3 HIKESHI-207ENST00000533986 1694 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
SMC1BQ8NDV3 HSPA1A-202ENST00000608703 1909 ntTSL 2 BASIC21.63■■□□□ 1.05
SMC1BQ8NDV3 EBF4-202ENST00000380648 2910 ntAPPRIS P2 TSL 5 BASIC21.62■■□□□ 1.05
SMC1BQ8NDV3 PRKCD-202ENST00000394729 2810 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
SMC1BQ8NDV3 TMED4-203ENST00000457408 2322 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
SMC1BQ8NDV3 ATP6AP1-201ENST00000369762 2099 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
SMC1BQ8NDV3 MAPRE3-203ENST00000405074 1801 ntTSL 3 BASIC21.62■■□□□ 1.05
SMC1BQ8NDV3 POMGNT2-202ENST00000441964 2531 ntAPPRIS P1 TSL 4 BASIC21.62■■□□□ 1.05
SMC1BQ8NDV3 SEC61A2-205ENST00000379033 2462 ntTSL 2 BASIC21.62■■□□□ 1.05
SMC1BQ8NDV3 WIPI2-211ENST00000484262 1504 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
SMC1BQ8NDV3 NR2F2-201ENST00000394166 5275 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
SMC1BQ8NDV3 AC064807.1-203ENST00000520357 575 ntTSL 5 BASIC21.62■■□□□ 1.05
SMC1BQ8NDV3 AC123777.1-201ENST00000534827 1247 ntTSL 3 BASIC21.62■■□□□ 1.05
SMC1BQ8NDV3 ADA-207ENST00000537820 1128 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
SMC1BQ8NDV3 AL031432.2-201ENST00000566714 459 ntBASIC21.62■■□□□ 1.05
SMC1BQ8NDV3 SPATA33-208ENST00000568929 1264 ntAPPRIS ALT2 TSL 2 BASIC21.62■■□□□ 1.05
SMC1BQ8NDV3 AL928711.1-201ENST00000570165 459 ntBASIC21.62■■□□□ 1.05
SMC1BQ8NDV3 EARS2-206ENST00000563232 1709 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
SMC1BQ8NDV3 SAV1-201ENST00000324679 3063 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
SMC1BQ8NDV3 MED29-202ENST00000594368 1471 ntTSL 2 BASIC21.62■■□□□ 1.05
SMC1BQ8NDV3 ABHD14B-202ENST00000361143 1636 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
SMC1BQ8NDV3 STK11-205ENST00000586243 2777 ntAPPRIS ALT2 TSL 5 BASIC21.61■■□□□ 1.05
SMC1BQ8NDV3 TMSB4X-203ENST00000380636 1702 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
SMC1BQ8NDV3 DOK2-201ENST00000276420 1936 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
SMC1BQ8NDV3 KMT5B-201ENST00000304363 5837 ntAPPRIS P1 TSL 5 BASIC21.61■■□□□ 1.05
SMC1BQ8NDV3 KREMEN2-202ENST00000319500 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC21.61■■□□□ 1.05
SMC1BQ8NDV3 ZNF446-208ENST00000622313 1884 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
SMC1BQ8NDV3 KRT8P32-201ENST00000512863 1461 ntBASIC21.61■■□□□ 1.05
SMC1BQ8NDV3 IGKV4-1-201ENST00000390243 538 ntAPPRIS P1 BASIC21.61■■□□□ 1.05
SMC1BQ8NDV3 AC073621.1-201ENST00000392730 636 ntBASIC21.61■■□□□ 1.05
SMC1BQ8NDV3 NDUFA4L2-201ENST00000393825 1186 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
SMC1BQ8NDV3 PDE6D-202ENST00000409772 672 ntTSL 3 BASIC21.61■■□□□ 1.05
SMC1BQ8NDV3 NKIRAS1-204ENST00000416026 795 ntAPPRIS P2 TSL 3 BASIC21.61■■□□□ 1.05
SMC1BQ8NDV3 AC136632.2-201ENST00000512891 861 ntBASIC21.61■■□□□ 1.05
SMC1BQ8NDV3 MOK-203ENST00000517966 1230 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
SMC1BQ8NDV3 COX14-202ENST00000548985 677 ntAPPRIS P1 TSL 2 BASIC21.61■■□□□ 1.05
Retrieved 100 of 98,524 protein–RNA pairs in 45.3 ms