Protein–RNA interactions for Protein: Q6A162

KRT40, Keratin, type I cytoskeletal 40, humanhuman

Predictions only

Length 431 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT40Q6A162 DBN1-201ENST00000292385 3072 ntAPPRIS P4 TSL 1 (best) BASIC21.22■□□□□ 0.99
KRT40Q6A162 DCST1-204ENST00000423025 2199 ntAPPRIS ALT2 TSL 2 BASIC21.22■□□□□ 0.99
KRT40Q6A162 HMGA1-205ENST00000447654 2159 ntAPPRIS P4 TSL 1 (best) BASIC21.22■□□□□ 0.99
KRT40Q6A162 NIFK-201ENST00000285814 1734 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
KRT40Q6A162 AC018470.1-201ENST00000624790 3129 ntBASIC21.22■□□□□ 0.99
KRT40Q6A162 SAPCD2P2-201ENST00000431719 1174 ntBASIC21.22■□□□□ 0.99
KRT40Q6A162 AC007563.2-201ENST00000447289 552 ntTSL 5 BASIC21.22■□□□□ 0.99
KRT40Q6A162 SEC1P-202ENST00000473944 940 ntBASIC21.22■□□□□ 0.99
KRT40Q6A162 C14orf144-201ENST00000553757 537 ntTSL 4 BASIC21.22■□□□□ 0.99
KRT40Q6A162 ULK4P3-205ENST00000568486 1158 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
KRT40Q6A162 PTENP1-AS-201ENST00000627688 873 ntTSL 5 BASIC21.22■□□□□ 0.99
KRT40Q6A162 PITPNB-211ENST00000634017 1017 ntAPPRIS ALT1 TSL 2 BASIC21.22■□□□□ 0.99
KRT40Q6A162 PPP1R7-202ENST00000272983 1954 ntTSL 2 BASIC21.22■□□□□ 0.99
KRT40Q6A162 LUC7L-221ENST00000629543 1520 ntTSL 5 BASIC21.22■□□□□ 0.99
KRT40Q6A162 B4GALT4-202ENST00000393765 2459 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
KRT40Q6A162 AC060780.1-201ENST00000635600 1782 ntTSL 5 BASIC21.22■□□□□ 0.99
KRT40Q6A162 ARHGAP8-202ENST00000356099 1584 ntAPPRIS P3 TSL 1 (best) BASIC21.22■□□□□ 0.99
KRT40Q6A162 PPP2R2C-209ENST00000515571 1832 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
KRT40Q6A162 C2CD2L-205ENST00000528586 2320 ntTSL 2 BASIC21.22■□□□□ 0.99
KRT40Q6A162 IDUA-210ENST00000514224 2130 ntTSL 2 BASIC21.22■□□□□ 0.99
KRT40Q6A162 FO681492.1-203ENST00000622861 1362 ntAPPRIS ALT2 TSL 5 BASIC21.22■□□□□ 0.99
KRT40Q6A162 LINC00535-201ENST00000501400 1914 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
KRT40Q6A162 PRDM12-201ENST00000253008 2476 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
KRT40Q6A162 ACBD5-201ENST00000375888 1747 ntAPPRIS ALT2 TSL 5 BASIC21.21■□□□□ 0.99
KRT40Q6A162 WDTC1-201ENST00000319394 4819 ntAPPRIS ALT1 TSL 1 (best) BASIC21.21■□□□□ 0.99
KRT40Q6A162 NCF1B-201ENST00000423083 1516 ntTSL 2 BASIC21.21■□□□□ 0.99
KRT40Q6A162 C22orf39-205ENST00000542103 1523 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
KRT40Q6A162 UPK3B-201ENST00000257632 1296 ntAPPRIS P5 TSL 2 BASIC21.21■□□□□ 0.99
KRT40Q6A162 MED30-201ENST00000297347 985 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
KRT40Q6A162 IPPK-202ENST00000375522 882 ntTSL 3 BASIC21.21■□□□□ 0.99
KRT40Q6A162 BAIAP2L2-202ENST00000381669 2146 ntAPPRIS P2 TSL 1 (best) BASIC21.21■□□□□ 0.99
KRT40Q6A162 TRPT1-202ENST00000394546 1058 ntAPPRIS ALT1 TSL 5 BASIC21.21■□□□□ 0.99
KRT40Q6A162 SIDT2-217ENST00000532062 2143 ntTSL 2 BASIC21.21■□□□□ 0.99
KRT40Q6A162 TRPT1-210ENST00000541278 941 ntTSL 2 BASIC21.21■□□□□ 0.99
KRT40Q6A162 LINC01238-205ENST00000567549 1107 ntBASIC21.21■□□□□ 0.99
KRT40Q6A162 NUDT16L1-203ENST00000586252 922 ntTSL 3 BASIC21.21■□□□□ 0.99
KRT40Q6A162 LINC00910-203ENST00000587874 544 ntTSL 4 BASIC21.21■□□□□ 0.99
KRT40Q6A162 AC024243.1-201ENST00000609234 778 ntBASIC21.21■□□□□ 0.99
KRT40Q6A162 AC093458.2-201ENST00000623150 629 ntBASIC21.21■□□□□ 0.99
KRT40Q6A162 AC005906.2-206ENST00000638180 1029 ntTSL 5 BASIC21.21■□□□□ 0.99
KRT40Q6A162 AP000550.4-202ENST00000639755 178 ntBASIC21.21■□□□□ 0.99
KRT40Q6A162 PTK6-201ENST00000217185 2401 ntTSL 2 BASIC21.21■□□□□ 0.99
KRT40Q6A162 FSCN2-201ENST00000334850 1551 ntTSL 5 BASIC21.21■□□□□ 0.99
KRT40Q6A162 GMCL1P1-201ENST00000463439 1581 ntBASIC21.21■□□□□ 0.99
KRT40Q6A162 FBXO44-201ENST00000251546 1896 ntTSL 2 BASIC21.21■□□□□ 0.99
KRT40Q6A162 POR-209ENST00000439269 1858 ntTSL 2 BASIC21.21■□□□□ 0.99
KRT40Q6A162 FLYWCH1P1-201ENST00000460917 1874 ntBASIC21.21■□□□□ 0.99
KRT40Q6A162 RNFT2-209ENST00000622220 2176 ntTSL 5 BASIC21.21■□□□□ 0.99
KRT40Q6A162 NUDT16L1-201ENST00000304301 1349 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
KRT40Q6A162 CASKIN2-205ENST00000581870 1612 ntTSL 2 BASIC21.21■□□□□ 0.99
KRT40Q6A162 DNAJA3-203ENST00000431375 2294 ntTSL 2 BASIC21.21■□□□□ 0.99
KRT40Q6A162 TAX1BP3-201ENST00000225525 1377 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
KRT40Q6A162 DACT2-201ENST00000366795 2942 ntAPPRIS P3 TSL 2 BASIC21.21■□□□□ 0.99
KRT40Q6A162 TTLL9-205ENST00000375938 2623 ntAPPRIS P2 TSL 2 BASIC21.21■□□□□ 0.99
KRT40Q6A162 MAPKAPK2-202ENST00000367103 2961 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
KRT40Q6A162 MSI2-203ENST00000416426 1714 ntTSL 2 BASIC21.21■□□□□ 0.99
KRT40Q6A162 MRPS7-204ENST00000579761 1717 ntTSL 2 BASIC21.21■□□□□ 0.99
KRT40Q6A162 FAM110D-201ENST00000374268 2858 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
KRT40Q6A162 FAM3A-204ENST00000369643 1521 ntAPPRIS P1 TSL 2 BASIC21.2■□□□□ 0.98
KRT40Q6A162 SNN-201ENST00000329565 3312 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
KRT40Q6A162 PRDM1-202ENST00000369091 2612 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
KRT40Q6A162 VPS37B-201ENST00000267202 3028 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
KRT40Q6A162 HIPK1-207ENST00000369561 3777 ntTSL 5 BASIC21.2■□□□□ 0.98
KRT40Q6A162 TM2D2-201ENST00000397070 1631 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
KRT40Q6A162 BUD23-201ENST00000265758 1230 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
KRT40Q6A162 SWI5-201ENST00000320188 980 ntAPPRIS P3 TSL 1 (best) BASIC21.2■□□□□ 0.98
KRT40Q6A162 FAM8A6P-201ENST00000407496 1135 ntBASIC21.2■□□□□ 0.98
KRT40Q6A162 CT47A4-201ENST00000415858 1298 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
KRT40Q6A162 CT47A9-201ENST00000417256 1298 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
KRT40Q6A162 CT47A6-201ENST00000419194 1298 ntAPPRIS P1 TSL 5 BASIC21.2■□□□□ 0.98
KRT40Q6A162 CT47A10-201ENST00000430448 1298 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
KRT40Q6A162 GRAMD4P1-201ENST00000435181 1110 ntBASIC21.2■□□□□ 0.98
KRT40Q6A162 CT47A5-201ENST00000439466 1298 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
KRT40Q6A162 CT47A3-201ENST00000441330 1298 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
KRT40Q6A162 CT47A8-201ENST00000457977 1298 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
KRT40Q6A162 CT47A2-201ENST00000458218 1298 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
KRT40Q6A162 C7orf49-209ENST00000483029 596 ntTSL 2 BASIC21.2■□□□□ 0.98
KRT40Q6A162 LINC01024-205ENST00000521563 939 ntTSL 3 BASIC21.2■□□□□ 0.98
KRT40Q6A162 AL512604.3-201ENST00000569583 964 ntBASIC21.2■□□□□ 0.98
KRT40Q6A162 GPX4-207ENST00000589115 812 ntTSL 2 BASIC21.2■□□□□ 0.98
KRT40Q6A162 AC010240.3-201ENST00000607688 395 ntBASIC21.2■□□□□ 0.98
KRT40Q6A162 LHX8-201ENST00000294638 2373 ntAPPRIS P3 TSL 1 (best) BASIC21.2■□□□□ 0.98
KRT40Q6A162 PTGES2-214ENST00000617202 1344 ntTSL 5 BASIC21.2■□□□□ 0.98
KRT40Q6A162 PHF12-202ENST00000332830 4759 ntAPPRIS P1 TSL 2 BASIC21.2■□□□□ 0.98
KRT40Q6A162 MYH14-206ENST00000596571 5988 ntAPPRIS ALT2 TSL 5 BASIC21.2■□□□□ 0.98
KRT40Q6A162 NUTM2F-202ENST00000341207 2516 ntAPPRIS ALT2 TSL 5 BASIC21.2■□□□□ 0.98
KRT40Q6A162 NUTM2G-202ENST00000372322 2516 ntAPPRIS ALT2 TSL 5 BASIC21.2■□□□□ 0.98
KRT40Q6A162 KCNH2-203ENST00000430723 2648 ntTSL 5 BASIC21.2■□□□□ 0.98
KRT40Q6A162 NDUFA10-214ENST00000620965 1489 ntAPPRIS ALT1 TSL 5 BASIC21.2■□□□□ 0.98
KRT40Q6A162 TDRKH-207ENST00000458431 2768 ntAPPRIS P2 TSL 1 (best) BASIC21.19■□□□□ 0.98
KRT40Q6A162 PFDN6-206ENST00000463584 1915 ntTSL 3 BASIC21.19■□□□□ 0.98
KRT40Q6A162 CDX4-201ENST00000373514 1515 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
KRT40Q6A162 MBD1-206ENST00000382948 2434 ntAPPRIS P3 TSL 2 BASIC21.19■□□□□ 0.98
KRT40Q6A162 BAG3-201ENST00000369085 2571 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
KRT40Q6A162 TCP11-228ENST00000611141 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
KRT40Q6A162 TMEM234-201ENST00000309777 1082 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
KRT40Q6A162 MRPL52-201ENST00000311892 1042 ntTSL 3 BASIC21.19■□□□□ 0.98
KRT40Q6A162 CD1E-211ENST00000368166 1271 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
KRT40Q6A162 EHMT1-211ENST00000482340 691 ntTSL 5 BASIC21.19■□□□□ 0.98
KRT40Q6A162 AC104596.1-202ENST00000507486 759 ntTSL 3 BASIC21.19■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 56.8 ms