Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 NOC2LP2-201ENST00000407594 1944 ntBASIC15.22■□□□□ 0.03
PDLIM3Q53GG5 AC018755.2-202ENST00000429354 1926 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
PDLIM3Q53GG5 FAM219B-204ENST00000563119 2721 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
PDLIM3Q53GG5 TK2-201ENST00000299697 5114 ntAPPRIS P3 TSL 1 (best) BASIC15.22■□□□□ 0.03
PDLIM3Q53GG5 TSPO2-202ENST00000373161 958 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
PDLIM3Q53GG5 PRICKLE4-202ENST00000394260 1035 ntAPPRIS ALT2 TSL 2 BASIC15.22■□□□□ 0.03
PDLIM3Q53GG5 PRICKLE4-203ENST00000394263 1155 ntAPPRIS P2 TSL 5 BASIC15.22■□□□□ 0.03
PDLIM3Q53GG5 CCK-203ENST00000434608 747 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
PDLIM3Q53GG5 TSPO2-203ENST00000470917 699 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
PDLIM3Q53GG5 LEF1-AS1-203ENST00000507799 459 ntTSL 3 BASIC15.22■□□□□ 0.03
PDLIM3Q53GG5 TRMT112-203ENST00000535750 823 ntTSL 2 BASIC15.22■□□□□ 0.03
PDLIM3Q53GG5 PSMD8-202ENST00000585598 541 ntTSL 5 BASIC15.22■□□□□ 0.03
PDLIM3Q53GG5 MRPL4-204ENST00000588502 827 ntTSL 2 BASIC15.22■□□□□ 0.03
PDLIM3Q53GG5 AC073195.1-201ENST00000607241 877 ntBASIC15.22■□□□□ 0.03
PDLIM3Q53GG5 PGLYRP2-202ENST00000340880 2230 ntAPPRIS P2 TSL 1 (best) BASIC15.22■□□□□ 0.03
PDLIM3Q53GG5 IL17RC-215ENST00000455057 2244 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
PDLIM3Q53GG5 RBFA-202ENST00000306735 1407 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
PDLIM3Q53GG5 NGLY1-207ENST00000428257 2534 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
PDLIM3Q53GG5 APLP2-210ENST00000528499 2530 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
PDLIM3Q53GG5 NOL3-204ENST00000564053 1592 ntAPPRIS ALT2 TSL 2 BASIC15.22■□□□□ 0.03
PDLIM3Q53GG5 SYNGAP1-202ENST00000418600 5828 ntTSL 5 BASIC15.22■□□□□ 0.03
PDLIM3Q53GG5 ZGPAT-202ENST00000355969 1871 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
PDLIM3Q53GG5 SBNO2-202ENST00000438103 4537 ntAPPRIS ALT2 TSL 2 BASIC15.22■□□□□ 0.03
PDLIM3Q53GG5 JPH2-202ENST00000372980 4787 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.03
PDLIM3Q53GG5 VEGFB-201ENST00000309422 1380 ntAPPRIS P3 TSL 1 (best) BASIC15.22■□□□□ 0.03
PDLIM3Q53GG5 FEZF1-202ENST00000427185 1368 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
PDLIM3Q53GG5 FOXO3-201ENST00000343882 7308 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
PDLIM3Q53GG5 TXNRD3-205ENST00000640797 1824 ntAPPRIS ALT2 TSL 2 BASIC15.22■□□□□ 0.03
PDLIM3Q53GG5 DOK7-201ENST00000340083 2562 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
PDLIM3Q53GG5 DOK7-203ENST00000507039 2551 ntTSL 2 BASIC15.22■□□□□ 0.03
PDLIM3Q53GG5 PLA2G2F-201ENST00000375102 2723 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
PDLIM3Q53GG5 MTMR12-201ENST00000264934 2215 ntTSL 2 BASIC15.21■□□□□ 0.03
PDLIM3Q53GG5 STX5-202ENST00000377897 1785 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
PDLIM3Q53GG5 CSK-201ENST00000220003 2767 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
PDLIM3Q53GG5 TJP1-201ENST00000346128 7950 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.03
PDLIM3Q53GG5 AC135782.1-201ENST00000537498 2154 ntTSL 2 BASIC15.21■□□□□ 0.03
PDLIM3Q53GG5 P2RX2-206ENST00000389110 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
PDLIM3Q53GG5 P2RX2-208ENST00000542301 1881 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
PDLIM3Q53GG5 UBR3-201ENST00000272793 8005 ntAPPRIS P1 TSL 5 BASIC15.21■□□□□ 0.03
PDLIM3Q53GG5 EXOC3L2-201ENST00000252482 1230 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
PDLIM3Q53GG5 VMO1-201ENST00000328739 766 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
PDLIM3Q53GG5 MPG-203ENST00000397817 1039 ntAPPRIS ALT2 TSL 2 BASIC15.21■□□□□ 0.03
PDLIM3Q53GG5 GPM6B-204ENST00000398361 1033 ntTSL 2 BASIC15.21■□□□□ 0.03
PDLIM3Q53GG5 AL390955.1-201ENST00000428694 934 ntBASIC15.21■□□□□ 0.03
PDLIM3Q53GG5 TSPAN14-209ENST00000481124 808 ntTSL 2 BASIC15.21■□□□□ 0.03
PDLIM3Q53GG5 AC063952.2-201ENST00000498792 1227 ntBASIC15.21■□□□□ 0.03
PDLIM3Q53GG5 FITM1-202ENST00000559294 800 ntBASIC15.21■□□□□ 0.03
PDLIM3Q53GG5 LRRC75A-AS1-225ENST00000581913 1091 ntTSL 2 BASIC15.21■□□□□ 0.03
PDLIM3Q53GG5 LINC00910-203ENST00000587874 544 ntTSL 4 BASIC15.21■□□□□ 0.03
PDLIM3Q53GG5 PRLHR-202ENST00000636925 1275 ntAPPRIS P1 BASIC15.21■□□□□ 0.03
PDLIM3Q53GG5 INPP4A-202ENST00000409016 9996 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
PDLIM3Q53GG5 ANKS3-230ENST00000614075 2387 ntAPPRIS P1 TSL 5 BASIC15.21■□□□□ 0.03
PDLIM3Q53GG5 DIO1-201ENST00000322679 1658 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
PDLIM3Q53GG5 PPP2R2C-206ENST00000507294 1667 ntTSL 2 BASIC15.21■□□□□ 0.03
PDLIM3Q53GG5 DIO1-217ENST00000617230 1656 ntTSL 5 BASIC15.21■□□□□ 0.03
PDLIM3Q53GG5 TMPRSS5-209ENST00000544634 1524 ntTSL 2 BASIC15.21■□□□□ 0.03
PDLIM3Q53GG5 NAA35-201ENST00000361671 2649 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
PDLIM3Q53GG5 B4GALT4-202ENST00000393765 2459 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
PDLIM3Q53GG5 PKD1P5-201ENST00000532415 10291 ntBASIC15.21■□□□□ 0.02
PDLIM3Q53GG5 PTGER3-201ENST00000306666 2333 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.02
PDLIM3Q53GG5 AP003774.1-201ENST00000316124 2340 ntTSL 2 BASIC15.21■□□□□ 0.02
PDLIM3Q53GG5 SSUH2-202ENST00000341795 1799 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.02
PDLIM3Q53GG5 AP5S1-202ENST00000379567 1791 ntAPPRIS P1 TSL 2 BASIC15.21■□□□□ 0.02
PDLIM3Q53GG5 PFN2-203ENST00000452853 1780 ntAPPRIS ALT1 TSL 1 (best) BASIC15.21■□□□□ 0.02
PDLIM3Q53GG5 HCLS1-201ENST00000314583 2000 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
PDLIM3Q53GG5 ISL2-201ENST00000290759 1881 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
PDLIM3Q53GG5 PRR23B-201ENST00000329447 1896 ntAPPRIS P1 BASIC15.2■□□□□ 0.02
PDLIM3Q53GG5 TFCP2-204ENST00000548115 1862 ntTSL 5 BASIC15.2■□□□□ 0.02
PDLIM3Q53GG5 MRPS7-204ENST00000579761 1717 ntTSL 2 BASIC15.2■□□□□ 0.02
PDLIM3Q53GG5 LRRC36-201ENST00000329956 2395 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
PDLIM3Q53GG5 FAM83G-202ENST00000388995 5266 ntAPPRIS P1 TSL 5 BASIC15.2■□□□□ 0.02
PDLIM3Q53GG5 PDXK-219ENST00000621478 1967 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
PDLIM3Q53GG5 CHRAC1-201ENST00000220913 2488 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
PDLIM3Q53GG5 ZBTB10-203ENST00000430430 10132 ntAPPRIS P3 TSL 5 BASIC15.2■□□□□ 0.02
PDLIM3Q53GG5 FBXL18-205ENST00000620087 2076 ntTSL 5 BASIC15.2■□□□□ 0.02
PDLIM3Q53GG5 ZNRF2-201ENST00000323037 3460 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
PDLIM3Q53GG5 C12orf65-202ENST00000366329 1901 ntAPPRIS P2 TSL 2 BASIC15.2■□□□□ 0.02
PDLIM3Q53GG5 IQCE-217ENST00000623361 6775 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
PDLIM3Q53GG5 ZNF584-202ENST00000322834 1042 ntTSL 2 BASIC15.2■□□□□ 0.02
PDLIM3Q53GG5 ANG-201ENST00000336811 1222 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
PDLIM3Q53GG5 AC140479.4-201ENST00000561715 463 ntTSL 4 BASIC15.2■□□□□ 0.02
PDLIM3Q53GG5 AL121832.1-201ENST00000615180 677 ntTSL 3 BASIC15.2■□□□□ 0.02
PDLIM3Q53GG5 AC023511.2-201ENST00000618803 211 ntBASIC15.2■□□□□ 0.02
PDLIM3Q53GG5 ASAH1-251ENST00000637561 929 ntTSL 2 BASIC15.2■□□□□ 0.02
PDLIM3Q53GG5 AP001922.1-201ENST00000499390 1504 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
PDLIM3Q53GG5 CACNA1G-202ENST00000354983 8138 ntAPPRIS ALT2 TSL 5 BASIC15.2■□□□□ 0.02
PDLIM3Q53GG5 ZFC3H1-206ENST00000548100 1771 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
PDLIM3Q53GG5 BIRC8-201ENST00000426466 2026 ntAPPRIS P1 BASIC15.2■□□□□ 0.02
PDLIM3Q53GG5 LEFTY2-201ENST00000366820 2287 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
PDLIM3Q53GG5 PCDHA1-203ENST00000504120 5263 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
PDLIM3Q53GG5 GPATCH3-201ENST00000361720 2123 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
PDLIM3Q53GG5 PTTG1IP-204ENST00000445724 2497 ntTSL 2 BASIC15.2■□□□□ 0.02
PDLIM3Q53GG5 SEMA5B-202ENST00000357599 4792 ntAPPRIS P3 TSL 1 (best) BASIC15.2■□□□□ 0.02
PDLIM3Q53GG5 ZNF419-201ENST00000221735 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
PDLIM3Q53GG5 GOLGA6L5P-202ENST00000515341 1828 ntBASIC15.2■□□□□ 0.02
PDLIM3Q53GG5 ZNF696-201ENST00000330143 2795 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
PDLIM3Q53GG5 AATK-201ENST00000326724 5257 ntAPPRIS P3 TSL 5 BASIC15.19■□□□□ 0.02
PDLIM3Q53GG5 MATN4-201ENST00000353917 1657 ntTSL 5 BASIC15.19■□□□□ 0.02
PDLIM3Q53GG5 TRIP4-201ENST00000261884 2045 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
PDLIM3Q53GG5 BANP-223ENST00000538234 2372 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 37.9 ms