Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 KANSL1-202ENST00000432791 5343 ntAPPRIS P3 TSL 1 (best) BASIC17.58■□□□□ 0.41
COL28A1Q2UY09 AL391807.1-203ENST00000604392 2365 ntBASIC17.58■□□□□ 0.41
COL28A1Q2UY09 LMTK2-201ENST00000297293 8946 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
COL28A1Q2UY09 DSCC1-201ENST00000313655 2314 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
COL28A1Q2UY09 PSMC3IP-204ENST00000587209 1381 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
COL28A1Q2UY09 RELB-207ENST00000625761 2279 ntAPPRIS ALT2 TSL 5 BASIC17.58■□□□□ 0.4
COL28A1Q2UY09 RPL7-202ENST00000396465 1308 ntTSL 3 BASIC17.58■□□□□ 0.4
COL28A1Q2UY09 NUS1P2-201ENST00000417358 873 ntBASIC17.58■□□□□ 0.4
COL28A1Q2UY09 UPF3AP3-201ENST00000420996 769 ntBASIC17.58■□□□□ 0.4
COL28A1Q2UY09 SPCS2-202ENST00000526361 772 ntTSL 2 BASIC17.58■□□□□ 0.4
COL28A1Q2UY09 KANSL1-AS1-203ENST00000572973 424 ntTSL 3 BASIC17.58■□□□□ 0.4
COL28A1Q2UY09 AC010327.4-202ENST00000591484 748 ntBASIC17.58■□□□□ 0.4
COL28A1Q2UY09 KCTD18-201ENST00000359878 2940 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
COL28A1Q2UY09 ASMTL-202ENST00000381333 2035 ntAPPRIS ALT2 TSL 2 BASIC17.58■□□□□ 0.4
COL28A1Q2UY09 SPON2-203ENST00000431380 1802 ntAPPRIS P1 TSL 5 BASIC17.58■□□□□ 0.4
COL28A1Q2UY09 USP25-204ENST00000400183 5341 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
COL28A1Q2UY09 MELTF-202ENST00000296351 1650 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
COL28A1Q2UY09 GJB3-202ENST00000373366 2217 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
COL28A1Q2UY09 GRK2-201ENST00000308595 3466 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
COL28A1Q2UY09 TDRKH-203ENST00000368824 2824 ntAPPRIS P2 TSL 1 (best) BASIC17.57■□□□□ 0.4
COL28A1Q2UY09 SEPT4-201ENST00000317256 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
COL28A1Q2UY09 SLC22A18-202ENST00000347936 1542 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
COL28A1Q2UY09 GXYLT1-202ENST00000398675 7497 ntAPPRIS P4 TSL 1 (best) BASIC17.57■□□□□ 0.4
COL28A1Q2UY09 MAPK9-201ENST00000343111 4369 ntTSL 5 BASIC17.57■□□□□ 0.4
COL28A1Q2UY09 LAT-204ENST00000395461 1448 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
COL28A1Q2UY09 TM9SF1-203ENST00000524835 1938 ntTSL 2 BASIC17.57■□□□□ 0.4
COL28A1Q2UY09 SLC9A6-202ENST00000370698 4631 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
COL28A1Q2UY09 MFSD1-219ENST00000622669 2361 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
COL28A1Q2UY09 CBFA2T2-201ENST00000342704 2864 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
COL28A1Q2UY09 BAALC-202ENST00000306391 243 ntTSL 5 BASIC17.57■□□□□ 0.4
COL28A1Q2UY09 BAALC-204ENST00000330955 222 ntTSL 5 BASIC17.57■□□□□ 0.4
COL28A1Q2UY09 HES2-202ENST00000377836 507 ntTSL 2 BASIC17.57■□□□□ 0.4
COL28A1Q2UY09 AL161452.1-201ENST00000415062 1117 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
COL28A1Q2UY09 CADM1-222ENST00000616271 1246 ntTSL 5 BASIC17.57■□□□□ 0.4
COL28A1Q2UY09 GAK-222ENST00000618573 1248 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
COL28A1Q2UY09 CAND2-206ENST00000626378 333 ntTSL 5 BASIC17.57■□□□□ 0.4
COL28A1Q2UY09 MFSD10-202ENST00000355443 1753 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
COL28A1Q2UY09 PTBP1-220ENST00000627714 2201 ntTSL 5 BASIC17.57■□□□□ 0.4
COL28A1Q2UY09 AL032819.2-201ENST00000624543 2162 ntBASIC17.57■□□□□ 0.4
COL28A1Q2UY09 RND1-201ENST00000309739 1681 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
COL28A1Q2UY09 CFAP77-203ENST00000393216 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
COL28A1Q2UY09 CAB39-202ENST00000409788 1626 ntAPPRIS P1 TSL 2 BASIC17.57■□□□□ 0.4
COL28A1Q2UY09 KCNQ5-203ENST00000355635 6623 ntAPPRIS ALT1 TSL 5 BASIC17.57■□□□□ 0.4
COL28A1Q2UY09 TPCN2-201ENST00000294309 2931 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
COL28A1Q2UY09 LTBP1-203ENST00000404816 6333 ntAPPRIS P4 TSL 5 BASIC17.57■□□□□ 0.4
COL28A1Q2UY09 TAPT1-201ENST00000405303 4591 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
COL28A1Q2UY09 CXorf40A-208ENST00000434353 1524 ntAPPRIS ALT1 TSL 5 BASIC17.57■□□□□ 0.4
COL28A1Q2UY09 SPIRE2-201ENST00000378247 3235 ntAPPRIS P2 TSL 1 (best) BASIC17.57■□□□□ 0.4
COL28A1Q2UY09 FAM87B-201ENST00000326734 1947 ntTSL 2 BASIC17.57■□□□□ 0.4
COL28A1Q2UY09 ZNF419-205ENST00000424930 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
COL28A1Q2UY09 RILPL2-201ENST00000280571 6141 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
COL28A1Q2UY09 TPSD1-201ENST00000211076 1499 ntAPPRIS P2 TSL 1 (best) BASIC17.56■□□□□ 0.4
COL28A1Q2UY09 NAT6-204ENST00000443094 1464 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
COL28A1Q2UY09 TXNRD3-205ENST00000640797 1824 ntAPPRIS ALT2 TSL 2 BASIC17.56■□□□□ 0.4
COL28A1Q2UY09 TTC19-201ENST00000261647 3002 ntAPPRIS P2 TSL 1 (best) BASIC17.56■□□□□ 0.4
COL28A1Q2UY09 ZNF655-203ENST00000357864 1370 ntTSL 2 BASIC17.56■□□□□ 0.4
COL28A1Q2UY09 CCDC74B-202ENST00000392984 1353 ntAPPRIS ALT2 TSL 5 BASIC17.56■□□□□ 0.4
COL28A1Q2UY09 RPS6KB2-201ENST00000312629 1733 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
COL28A1Q2UY09 TRIM36-202ENST00000379617 1322 ntTSL 2 BASIC17.56■□□□□ 0.4
COL28A1Q2UY09 LIMS2-204ENST00000409286 1678 ntTSL 2 BASIC17.56■□□□□ 0.4
COL28A1Q2UY09 AC005332.7-201ENST00000614046 2005 ntBASIC17.56■□□□□ 0.4
COL28A1Q2UY09 TYMS-202ENST00000323250 693 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
COL28A1Q2UY09 TSPY8-203ENST00000383005 435 ntTSL 5 BASIC17.56■□□□□ 0.4
COL28A1Q2UY09 SELENOM-201ENST00000400299 694 ntAPPRIS P2 TSL 1 (best) BASIC17.56■□□□□ 0.4
COL28A1Q2UY09 YPEL3-209ENST00000566595 796 ntAPPRIS P1 TSL 2 BASIC17.56■□□□□ 0.4
COL28A1Q2UY09 GPX4-212ENST00000616066 924 ntAPPRIS ALT1 TSL 5 BASIC17.56■□□□□ 0.4
COL28A1Q2UY09 MED16-213ENST00000616387 1078 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
COL28A1Q2UY09 AL390860.1-201ENST00000449298 1541 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
COL28A1Q2UY09 AGAP2-AS1-201ENST00000542466 1500 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
COL28A1Q2UY09 MEN1-208ENST00000394374 3155 ntAPPRIS P3 TSL 5 BASIC17.56■□□□□ 0.4
COL28A1Q2UY09 PDLIM2-204ENST00000397760 1847 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
COL28A1Q2UY09 ALDOA-212ENST00000564546 2104 ntAPPRIS P2 TSL 1 (best) BASIC17.56■□□□□ 0.4
COL28A1Q2UY09 ETV4-201ENST00000319349 2429 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
COL28A1Q2UY09 FGFR2-208ENST00000360144 3001 ntTSL 2 BASIC17.56■□□□□ 0.4
COL28A1Q2UY09 SYT8-202ENST00000381968 1424 ntAPPRIS P2 TSL 5 BASIC17.55■□□□□ 0.4
COL28A1Q2UY09 IFNL4-203ENST00000634680 1421 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
COL28A1Q2UY09 COBL-202ENST00000395540 2332 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
COL28A1Q2UY09 MARK2-201ENST00000350490 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
COL28A1Q2UY09 IRF5-202ENST00000357234 1680 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
COL28A1Q2UY09 VPS37D-202ENST00000451519 1303 ntTSL 5 BASIC17.55■□□□□ 0.4
COL28A1Q2UY09 FHL1-219ENST00000618438 2178 ntTSL 3 BASIC17.55■□□□□ 0.4
COL28A1Q2UY09 ENOPH1-203ENST00000509635 1874 ntTSL 3 BASIC17.55■□□□□ 0.4
COL28A1Q2UY09 TNNC1-201ENST00000232975 714 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
COL28A1Q2UY09 NPFFR2-202ENST00000344413 1234 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
COL28A1Q2UY09 GNB2-205ENST00000419828 1285 ntTSL 5 BASIC17.55■□□□□ 0.4
COL28A1Q2UY09 IGHV3-47-201ENST00000425060 335 ntBASIC17.55■□□□□ 0.4
COL28A1Q2UY09 BET1L-206ENST00000486280 665 ntTSL 3 BASIC17.55■□□□□ 0.4
COL28A1Q2UY09 RPS15-207ENST00000591032 550 ntTSL 3 BASIC17.55■□□□□ 0.4
COL28A1Q2UY09 ATP5D-207ENST00000591660 637 ntAPPRIS P1 TSL 3 BASIC17.55■□□□□ 0.4
COL28A1Q2UY09 AL390719.2-201ENST00000606993 987 ntBASIC17.55■□□□□ 0.4
COL28A1Q2UY09 AC083906.6-201ENST00000641366 219 ntBASIC17.55■□□□□ 0.4
COL28A1Q2UY09 AC079781.4-201ENST00000641908 219 ntBASIC17.55■□□□□ 0.4
COL28A1Q2UY09 UBXN2A-201ENST00000309033 6066 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
COL28A1Q2UY09 MRM3-201ENST00000304478 1809 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
COL28A1Q2UY09 PLPP4-202ENST00000398250 1521 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
COL28A1Q2UY09 PCDHA2-203ENST00000526136 5254 ntAPPRIS P2 TSL 1 (best) BASIC17.55■□□□□ 0.4
COL28A1Q2UY09 DBNL-219ENST00000490734 2004 ntTSL 2 BASIC17.55■□□□□ 0.4
COL28A1Q2UY09 EARS2-210ENST00000564501 2027 ntTSL 5 BASIC17.55■□□□□ 0.4
COL28A1Q2UY09 FBXL16-203ENST00000562563 2257 ntTSL 2 BASIC17.55■□□□□ 0.4
COL28A1Q2UY09 CSNK2A2-201ENST00000262506 1701 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 23.2 ms