Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 AC007952.1-201ENST00000399087 553 ntTSL 1 (best) BASIC25.27■■□□□ 1.64
MSH6P52701 AC007952.2-202ENST00000399093 556 ntTSL 1 (best) BASIC25.27■■□□□ 1.64
MSH6P52701 ZNF436-AS1-203ENST00000454117 997 ntTSL 1 (best) BASIC25.27■■□□□ 1.64
MSH6P52701 AC026191.1-201ENST00000491930 829 ntTSL 3 BASIC25.27■■□□□ 1.64
MSH6P52701 NUTF2-206ENST00000569436 1119 ntAPPRIS P1 TSL 2 BASIC25.27■■□□□ 1.64
MSH6P52701 AC106017.2-202ENST00000628484 536 ntTSL 1 (best) BASIC25.27■■□□□ 1.64
MSH6P52701 ZNF655-202ENST00000320583 1601 ntTSL 1 (best) BASIC25.27■■□□□ 1.64
MSH6P52701 KLK5-201ENST00000336334 1563 ntAPPRIS P1 TSL 1 (best) BASIC25.27■■□□□ 1.64
MSH6P52701 SENP5-204ENST00000445299 2491 ntTSL 2 BASIC25.26■■□□□ 1.64
MSH6P52701 WIPI2-203ENST00000401525 2112 ntAPPRIS P1 TSL 1 (best) BASIC25.26■■□□□ 1.63
MSH6P52701 TPBGL-201ENST00000562197 2793 ntAPPRIS P1 BASIC25.26■■□□□ 1.63
MSH6P52701 SLC17A7-201ENST00000221485 2973 ntAPPRIS P1 TSL 1 (best) BASIC25.26■■□□□ 1.63
MSH6P52701 MIXL1-201ENST00000366810 2005 ntAPPRIS P1 TSL 1 (best) BASIC25.26■■□□□ 1.63
MSH6P52701 C16orf70-208ENST00000569600 1353 ntAPPRIS P1 TSL 1 (best) BASIC25.26■■□□□ 1.63
MSH6P52701 LSR-214ENST00000621372 2274 ntAPPRIS P4 TSL 1 (best) BASIC25.26■■□□□ 1.63
MSH6P52701 NR6A1-202ENST00000373584 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC25.26■■□□□ 1.63
MSH6P52701 FGFBP2-201ENST00000259989 1168 ntAPPRIS P1 TSL 1 (best) BASIC25.26■■□□□ 1.63
MSH6P52701 PFDN6-201ENST00000374606 740 ntAPPRIS P1 TSL 1 (best) BASIC25.26■■□□□ 1.63
MSH6P52701 MIR149-201ENST00000384879 89 ntBASIC25.26■■□□□ 1.63
MSH6P52701 GNB2-207ENST00000427895 1146 ntTSL 5 BASIC25.26■■□□□ 1.63
MSH6P52701 RNASE10-202ENST00000430083 1172 ntTSL 2 BASIC25.26■■□□□ 1.63
MSH6P52701 HOXD8-203ENST00000450510 1268 ntAPPRIS ALT2 TSL 1 (best) BASIC25.26■■□□□ 1.63
MSH6P52701 IRX1P1-201ENST00000438849 1838 ntBASIC25.26■■□□□ 1.63
MSH6P52701 LIMS2-207ENST00000409808 2315 ntAPPRIS ALT1 TSL 5 BASIC25.26■■□□□ 1.63
MSH6P52701 METTL21A-208ENST00000448007 1770 ntAPPRIS P1 TSL 1 (best) BASIC25.26■■□□□ 1.63
MSH6P52701 GAS7-205ENST00000542249 1799 ntTSL 1 (best) BASIC25.26■■□□□ 1.63
MSH6P52701 ZXDC-201ENST00000336332 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC25.26■■□□□ 1.63
MSH6P52701 B4GALT2-201ENST00000309519 2004 ntTSL 2 BASIC25.26■■□□□ 1.63
MSH6P52701 TMED3-201ENST00000299705 1475 ntAPPRIS P1 TSL 1 (best) BASIC25.26■■□□□ 1.63
MSH6P52701 RAB11FIP4-201ENST00000394744 1968 ntTSL 2 BASIC25.26■■□□□ 1.63
MSH6P52701 TEAD2-210ENST00000601519 2167 ntAPPRIS ALT1 TSL 1 (best) BASIC25.25■■□□□ 1.63
MSH6P52701 AMER2-202ENST00000515384 3197 ntAPPRIS P1 BASIC25.25■■□□□ 1.63
MSH6P52701 IRF9-203ENST00000557894 1391 ntTSL 5 BASIC25.25■■□□□ 1.63
MSH6P52701 SAE1-203ENST00000413379 2313 ntTSL 2 BASIC25.25■■□□□ 1.63
MSH6P52701 LBX2-AS1-202ENST00000603175 2083 ntBASIC25.25■■□□□ 1.63
MSH6P52701 P2RY6-203ENST00000393591 1829 ntAPPRIS P1 TSL 1 (best) BASIC25.25■■□□□ 1.63
MSH6P52701 ZDHHC4-206ENST00000405731 1348 ntAPPRIS P1 TSL 1 (best) BASIC25.25■■□□□ 1.63
MSH6P52701 AC097374.2-201ENST00000618617 1306 ntBASIC25.25■■□□□ 1.63
MSH6P52701 RAB5A-201ENST00000273047 2536 ntAPPRIS P1 TSL 1 (best) BASIC25.25■■□□□ 1.63
MSH6P52701 SFT2D1-201ENST00000361731 1079 ntAPPRIS P1 TSL 1 (best) BASIC25.25■■□□□ 1.63
MSH6P52701 MCFD2-205ENST00000409218 648 ntAPPRIS P1 TSL 2 BASIC25.25■■□□□ 1.63
MSH6P52701 DARS-AS1-203ENST00000438432 768 ntTSL 3 BASIC25.25■■□□□ 1.63
MSH6P52701 SRP19-202ENST00000445150 833 ntTSL 2 BASIC25.25■■□□□ 1.63
MSH6P52701 SLC9A3R2-208ENST00000566198 1199 ntTSL 2 BASIC25.25■■□□□ 1.63
MSH6P52701 AC244517.5-205ENST00000623615 575 ntTSL 4 BASIC25.25■■□□□ 1.63
MSH6P52701 C20orf181-201ENST00000623918 480 ntBASIC25.25■■□□□ 1.63
MSH6P52701 TEX22-201ENST00000451127 2571 ntAPPRIS P1 TSL 2 BASIC25.25■■□□□ 1.63
MSH6P52701 EXOC3L2-202ENST00000413988 2964 ntAPPRIS P1 TSL 5 BASIC25.25■■□□□ 1.63
MSH6P52701 LMCD1-204ENST00000426878 1431 ntTSL 2 BASIC25.25■■□□□ 1.63
MSH6P52701 CORO6-212ENST00000584969 1416 ntAPPRIS ALT1 TSL 5 BASIC25.25■■□□□ 1.63
MSH6P52701 MYBPH-201ENST00000255416 1805 ntAPPRIS P1 TSL 1 (best) BASIC25.25■■□□□ 1.63
MSH6P52701 CAMK1D-201ENST00000378845 1578 ntAPPRIS ALT2 TSL 1 (best) BASIC25.24■■□□□ 1.63
MSH6P52701 ZNF561-AS1-204ENST00000587536 1799 ntTSL 2 BASIC25.24■■□□□ 1.63
MSH6P52701 NRN1-204ENST00000622188 1795 ntTSL 2 BASIC25.24■■□□□ 1.63
MSH6P52701 ACAP3-201ENST00000353662 2280 ntTSL 1 (best) BASIC25.24■■□□□ 1.63
MSH6P52701 PAQR4-203ENST00000572687 2251 ntTSL 2 BASIC25.24■■□□□ 1.63
MSH6P52701 NAPRT-203ENST00000435154 1877 ntTSL 2 BASIC25.24■■□□□ 1.63
MSH6P52701 AC083864.1-201ENST00000381493 1497 ntTSL 1 (best) BASIC25.24■■□□□ 1.63
MSH6P52701 DNAJC4-203ENST00000355040 759 ntTSL 1 (best) BASIC25.24■■□□□ 1.63
MSH6P52701 AC131097.3-202ENST00000439270 331 ntTSL 5 BASIC25.24■■□□□ 1.63
MSH6P52701 SLC26A4-AS1-202ENST00000449741 586 ntTSL 4 BASIC25.24■■□□□ 1.63
MSH6P52701 BARX1-AS1-202ENST00000454594 307 ntTSL 3 BASIC25.24■■□□□ 1.63
MSH6P52701 AC092384.3-201ENST00000561980 531 ntTSL 4 BASIC25.24■■□□□ 1.63
MSH6P52701 AC006557.2-201ENST00000592985 1240 ntBASIC25.24■■□□□ 1.63
MSH6P52701 SWI5-206ENST00000608796 906 ntAPPRIS ALT2 TSL 1 (best) BASIC25.24■■□□□ 1.63
MSH6P52701 PDCD6-214ENST00000628729 1073 ntTSL 5 BASIC25.24■■□□□ 1.63
MSH6P52701 AC112907.3-201ENST00000577781 2400 ntBASIC25.24■■□□□ 1.63
MSH6P52701 NR1H2-211ENST00000599105 1830 ntAPPRIS ALT2 TSL 5 BASIC25.24■■□□□ 1.63
MSH6P52701 PQLC2-201ENST00000375153 2153 ntAPPRIS P1 TSL 2 BASIC25.24■■□□□ 1.63
MSH6P52701 CRELD1-206ENST00000452070 1778 ntAPPRIS P1 TSL 2 BASIC25.24■■□□□ 1.63
MSH6P52701 LINC01547-202ENST00000397841 2303 ntTSL 2 BASIC25.24■■□□□ 1.63
MSH6P52701 CLK2-202ENST00000361168 1934 ntAPPRIS P3 TSL 1 (best) BASIC25.24■■□□□ 1.63
MSH6P52701 AC011840.1-202ENST00000436477 1351 ntTSL 2 BASIC25.24■■□□□ 1.63
MSH6P52701 TRPV6-209ENST00000638686 2298 ntAPPRIS P2 TSL 1 (best) BASIC25.24■■□□□ 1.63
MSH6P52701 C12orf42-201ENST00000378113 1513 ntAPPRIS P2 TSL 5 BASIC25.23■■□□□ 1.63
MSH6P52701 ASL-204ENST00000395331 1538 ntTSL 5 BASIC25.23■■□□□ 1.63
MSH6P52701 TYROBP-201ENST00000262629 568 ntAPPRIS P3 TSL 1 (best) BASIC25.23■■□□□ 1.63
MSH6P52701 UPK2-201ENST00000264031 916 ntAPPRIS P1 TSL 1 (best) BASIC25.23■■□□□ 1.63
MSH6P52701 QRFP-201ENST00000343079 411 ntAPPRIS P1 BASIC25.23■■□□□ 1.63
MSH6P52701 GSTZ1-202ENST00000349555 867 ntTSL 2 BASIC25.23■■□□□ 1.63
MSH6P52701 MRPS18A-202ENST00000372133 1062 ntAPPRIS P1 TSL 1 (best) BASIC25.23■■□□□ 1.63
MSH6P52701 SLC4A1APP2-201ENST00000424054 1259 ntBASIC25.23■■□□□ 1.63
MSH6P52701 B4GALT1-AS1-202ENST00000442432 843 ntTSL 2 BASIC25.23■■□□□ 1.63
MSH6P52701 MIR3936HG-202ENST00000457998 733 ntTSL 2 BASIC25.23■■□□□ 1.63
MSH6P52701 AC068594.1-203ENST00000581153 695 ntTSL 2 BASIC25.23■■□□□ 1.63
MSH6P52701 SMIM22-210ENST00000615471 928 ntAPPRIS ALT2 TSL 3 BASIC25.23■■□□□ 1.63
MSH6P52701 RIIAD1-201ENST00000326413 1772 ntTSL 2 BASIC25.23■■□□□ 1.63
MSH6P52701 SRSF2-202ENST00000359995 1927 ntAPPRIS P1 TSL 1 (best) BASIC25.23■■□□□ 1.63
MSH6P52701 UBR2-203ENST00000372903 2423 ntTSL 1 (best) BASIC25.23■■□□□ 1.63
MSH6P52701 VPS26B-202ENST00000525095 1558 ntAPPRIS P1 TSL 5 BASIC25.23■■□□□ 1.63
MSH6P52701 PARD3-209ENST00000374790 5825 ntTSL 5 BASIC25.23■■□□□ 1.63
MSH6P52701 SLC39A5-209ENST00000454355 1968 ntAPPRIS P1 TSL 1 (best) BASIC25.23■■□□□ 1.63
MSH6P52701 CAPZB-202ENST00000264203 2068 ntTSL 2 BASIC25.22■■□□□ 1.63
MSH6P52701 GRK4-203ENST00000398052 2202 ntAPPRIS P1 TSL 1 (best) BASIC25.22■■□□□ 1.63
MSH6P52701 FAM189B-201ENST00000350210 2379 ntTSL 1 (best) BASIC25.22■■□□□ 1.63
MSH6P52701 UBXN1-201ENST00000294119 1291 ntTSL 1 (best) BASIC25.22■■□□□ 1.63
MSH6P52701 ATP6V1G2-205ENST00000303892 1588 ntAPPRIS P1 TSL 1 (best) BASIC25.22■■□□□ 1.63
MSH6P52701 EBF4-202ENST00000380648 2910 ntAPPRIS P2 TSL 5 BASIC25.22■■□□□ 1.63
MSH6P52701 AC073621.1-201ENST00000392730 636 ntBASIC25.22■■□□□ 1.63
MSH6P52701 UBE2J2-204ENST00000400929 1057 ntTSL 3 BASIC25.22■■□□□ 1.63
Retrieved 100 of 98,524 protein–RNA pairs in 26.6 ms