Protein–RNA interactions for Protein: P48431

SOX2, Transcription factor SOX-2, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX2P48431 KLF13-207ENST00000560473 489 ntTSL 3 BASIC16.16■□□□□ 0.18
SOX2P48431 CLN6-207ENST00000566347 981 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
SOX2P48431 AC087498.1-201ENST00000572493 945 ntAPPRIS P1 BASIC16.16■□□□□ 0.18
SOX2P48431 PRSS57-202ENST00000613411 1090 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
SOX2P48431 ARFGAP2-229ENST00000627920 2613 ntTSL 2 BASIC16.16■□□□□ 0.18
SOX2P48431 TOR2A-205ENST00000463577 2211 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
SOX2P48431 FCGBP-203ENST00000620799 4926 ntTSL 5 BASIC16.16■□□□□ 0.18
SOX2P48431 ESYT2-206ENST00000613624 2766 ntAPPRIS ALT2 TSL 2 BASIC16.16■□□□□ 0.18
SOX2P48431 L1CAM-203ENST00000370055 4655 ntTSL 5 BASIC16.16■□□□□ 0.18
SOX2P48431 TMEM65-201ENST00000297632 9029 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
SOX2P48431 CACNA2D1-203ENST00000423588 1429 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
SOX2P48431 SLC27A5-207ENST00000601355 1987 ntAPPRIS ALT2 TSL 2 BASIC16.16■□□□□ 0.18
SOX2P48431 PSMD8-207ENST00000592035 1581 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
SOX2P48431 PSRC1-201ENST00000369903 1710 ntAPPRIS P3 TSL 5 BASIC16.16■□□□□ 0.18
SOX2P48431 PSRC1-206ENST00000409267 1730 ntAPPRIS P3 TSL 5 BASIC16.16■□□□□ 0.18
SOX2P48431 OSMR-202ENST00000502536 1740 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
SOX2P48431 IRAK3-202ENST00000457197 1853 ntTSL 2 BASIC16.16■□□□□ 0.18
SOX2P48431 BACE1-203ENST00000428381 1333 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
SOX2P48431 HTR7P1-201ENST00000538670 1336 ntBASIC16.16■□□□□ 0.18
SOX2P48431 HNRNPK-202ENST00000360384 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC16.16■□□□□ 0.18
SOX2P48431 TJP3-201ENST00000539908 2897 ntAPPRIS ALT2 TSL 2 BASIC16.16■□□□□ 0.18
SOX2P48431 RAI2-201ENST00000331511 2317 ntAPPRIS P1 TSL 2 BASIC16.16■□□□□ 0.18
SOX2P48431 MYO19-225ENST00000621344 1640 ntTSL 2 BASIC16.16■□□□□ 0.18
SOX2P48431 GSDMD-201ENST00000262580 1762 ntAPPRIS P2 TSL 1 (best) BASIC16.15■□□□□ 0.18
SOX2P48431 ZDHHC20-202ENST00000382466 5338 ntAPPRIS P3 TSL 1 (best) BASIC16.15■□□□□ 0.18
SOX2P48431 FKBP8-206ENST00000596558 1756 ntAPPRIS ALT1 TSL 2 BASIC16.15■□□□□ 0.18
SOX2P48431 RNF222-201ENST00000344001 2786 ntAPPRIS P1 BASIC16.15■□□□□ 0.18
SOX2P48431 SLCO4A1-202ENST00000370507 2665 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
SOX2P48431 GPR42-201ENST00000454971 1804 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
SOX2P48431 MTHFD1L-211ENST00000611279 3475 ntAPPRIS ALT1 TSL 5 BASIC16.15■□□□□ 0.18
SOX2P48431 KCNQ1-201ENST00000155840 3245 ntAPPRIS P2 TSL 1 (best) BASIC16.15■□□□□ 0.18
SOX2P48431 NUBP2-201ENST00000262302 1413 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
SOX2P48431 SPATA2L-202ENST00000335360 1001 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
SOX2P48431 HLA-DRB1-201ENST00000360004 1229 ntAPPRIS P1 BASIC16.15■□□□□ 0.18
SOX2P48431 C7orf50-203ENST00000397100 1264 ntAPPRIS P2 TSL 3 BASIC16.15■□□□□ 0.18
SOX2P48431 SLC23A3-203ENST00000409878 2010 ntAPPRIS P1 TSL 2 BASIC16.15■□□□□ 0.18
SOX2P48431 AC026366.1-201ENST00000488803 879 ntBASIC16.15■□□□□ 0.18
SOX2P48431 BAALC-AS1-207ENST00000522856 594 ntTSL 3 BASIC16.15■□□□□ 0.18
SOX2P48431 FAM66C-209ENST00000544214 2623 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
SOX2P48431 AC009052.1-201ENST00000567090 298 ntTSL 3 BASIC16.15■□□□□ 0.18
SOX2P48431 ZNF599-203ENST00000588760 948 ntTSL 2 BASIC16.15■□□□□ 0.18
SOX2P48431 FLYWCH1-203ENST00000416288 4963 ntAPPRIS P3 TSL 1 (best) BASIC16.15■□□□□ 0.18
SOX2P48431 RAB23-202ENST00000468148 4837 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
SOX2P48431 RNPS1-202ENST00000320225 2241 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
SOX2P48431 ALAS2-203ENST00000396198 1936 ntTSL 5 BASIC16.15■□□□□ 0.18
SOX2P48431 EEF1AKMT2-201ENST00000368836 1462 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
SOX2P48431 HSPB6-201ENST00000004982 1457 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
SOX2P48431 MRPL4-202ENST00000307422 1320 ntAPPRIS P2 TSL 5 BASIC16.15■□□□□ 0.18
SOX2P48431 BCAT2-208ENST00000598162 1329 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
SOX2P48431 LINC00957-202ENST00000441052 2590 ntTSL 2 BASIC16.15■□□□□ 0.18
SOX2P48431 MOGS-205ENST00000452063 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
SOX2P48431 FGFR4-202ENST00000393637 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
SOX2P48431 SLC12A9-215ENST00000540482 2269 ntTSL 2 BASIC16.15■□□□□ 0.18
SOX2P48431 PLD3-207ENST00000409735 2140 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
SOX2P48431 RBM17-201ENST00000379888 2755 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
SOX2P48431 IGF2-204ENST00000381406 5179 ntAPPRIS ALT1 TSL 2 BASIC16.15■□□□□ 0.18
SOX2P48431 TICAM1-202ENST00000621756 1650 ntTSL 5 BASIC16.14■□□□□ 0.18
SOX2P48431 AC099343.3-201ENST00000605834 2503 ntBASIC16.14■□□□□ 0.17
SOX2P48431 TPRA1-204ENST00000450633 1865 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
SOX2P48431 NID1-202ENST00000366595 5412 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
SOX2P48431 TMEM104-202ENST00000417024 1781 ntTSL 2 BASIC16.14■□□□□ 0.17
SOX2P48431 MRGPRG-201ENST00000332314 870 ntAPPRIS P1 BASIC16.14■□□□□ 0.17
SOX2P48431 CMTM7-202ENST00000349718 1214 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
SOX2P48431 ZDHHC12-202ENST00000372667 1187 ntTSL 5 BASIC16.14■□□□□ 0.17
SOX2P48431 RTBDN-202ENST00000393233 1000 ntAPPRIS ALT2 TSL 3 BASIC16.14■□□□□ 0.17
SOX2P48431 HOXA9-202ENST00000396345 797 ntTSL 2 BASIC16.14■□□□□ 0.17
SOX2P48431 SERF2-207ENST00000409614 582 ntTSL 2 BASIC16.14■□□□□ 0.17
SOX2P48431 AC004951.3-201ENST00000418645 1148 ntBASIC16.14■□□□□ 0.17
SOX2P48431 NIFKP9-201ENST00000419265 221 ntBASIC16.14■□□□□ 0.17
SOX2P48431 RPS2P4-201ENST00000476944 856 ntBASIC16.14■□□□□ 0.17
SOX2P48431 SBF2-AS1-202ENST00000499953 854 ntTSL 5 BASIC16.14■□□□□ 0.17
SOX2P48431 AC091564.2-201ENST00000527191 399 ntTSL 3 BASIC16.14■□□□□ 0.17
SOX2P48431 AC004816.2-201ENST00000622856 284 ntTSL 5 BASIC16.14■□□□□ 0.17
SOX2P48431 AATK-201ENST00000326724 5257 ntAPPRIS P3 TSL 5 BASIC16.14■□□□□ 0.17
SOX2P48431 TRAM1-205ENST00000521425 3394 ntTSL 2 BASIC16.14■□□□□ 0.17
SOX2P48431 IL18BP-207ENST00000404792 2172 ntAPPRIS P2 TSL 1 (best) BASIC16.14■□□□□ 0.17
SOX2P48431 NAT6-201ENST00000354862 1330 ntAPPRIS P3 TSL 1 (best) BASIC16.14■□□□□ 0.17
SOX2P48431 AC083805.3-201ENST00000619560 1315 ntTSL 3 BASIC16.14■□□□□ 0.17
SOX2P48431 MED9-201ENST00000268711 2228 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
SOX2P48431 ERO1A-201ENST00000395686 5285 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
SOX2P48431 SMARCA4-215ENST00000590574 5282 ntAPPRIS ALT1 TSL 5 BASIC16.14■□□□□ 0.17
SOX2P48431 ADGRB2-212ENST00000527361 4919 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
SOX2P48431 CDC25A-202ENST00000351231 3663 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
SOX2P48431 INTS11-249ENST00000618806 1523 ntTSL 2 BASIC16.14■□□□□ 0.17
SOX2P48431 IGLON5-201ENST00000270642 2606 ntAPPRIS P1 TSL 5 BASIC16.14■□□□□ 0.17
SOX2P48431 PHKA1-205ENST00000541944 5944 ntAPPRIS ALT1 TSL 1 (best) BASIC16.13■□□□□ 0.17
SOX2P48431 DTX2-202ENST00000413936 2472 ntAPPRIS P3 TSL 1 (best) BASIC16.13■□□□□ 0.17
SOX2P48431 CNTNAP3-201ENST00000297668 5064 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
SOX2P48431 EPB41L5-203ENST00000443124 2872 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
SOX2P48431 AMFR-201ENST00000290649 3600 ntAPPRIS P2 TSL 1 (best) BASIC16.13■□□□□ 0.17
SOX2P48431 PHF20L1-201ENST00000220847 3297 ntTSL 5 BASIC16.13■□□□□ 0.17
SOX2P48431 CD19-202ENST00000538922 1957 ntAPPRIS ALT2 TSL 5 BASIC16.13■□□□□ 0.17
SOX2P48431 SATB1-201ENST00000338745 7810 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
SOX2P48431 GNE-204ENST00000539208 2190 ntTSL 2 BASIC16.13■□□□□ 0.17
SOX2P48431 ZCWPW1-202ENST00000398027 2356 ntAPPRIS P3 TSL 1 (best) BASIC16.13■□□□□ 0.17
SOX2P48431 ANXA6-201ENST00000354546 2593 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
SOX2P48431 STRA6-209ENST00000563965 2565 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
SOX2P48431 DAPK1-202ENST00000408954 5892 ntAPPRIS P1 TSL 2 BASIC16.13■□□□□ 0.17
SOX2P48431 CCT7-215ENST00000539919 2031 ntTSL 2 BASIC16.13■□□□□ 0.17
SOX2P48431 NDUFB10-201ENST00000268668 705 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 28.5 ms