Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 GPANK1-204ENST00000375900 1814 ntAPPRIS P1 TSL 2 BASIC20.59■□□□□ 0.89
CIITAP33076 HSPB8-201ENST00000281938 2152 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
CIITAP33076 LDHD-202ENST00000450168 1966 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
CIITAP33076 CLN8-211ENST00000636934 1790 ntTSL 5 BASIC20.59■□□□□ 0.89
CIITAP33076 ZSWIM8-220ENST00000604524 5465 ntTSL 5 BASIC20.59■□□□□ 0.89
CIITAP33076 LRRC27-203ENST00000368613 2113 ntAPPRIS P3 TSL 1 (best) BASIC20.59■□□□□ 0.89
CIITAP33076 HMGA1-201ENST00000311487 1920 ntAPPRIS P4 TSL 1 (best) BASIC20.59■□□□□ 0.89
CIITAP33076 GBGT1-208ENST00000540636 1934 ntTSL 2 BASIC20.59■□□□□ 0.89
CIITAP33076 AK1-203ENST00000373176 2266 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
CIITAP33076 JKAMP-201ENST00000261247 1726 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
CIITAP33076 MAGEA6-201ENST00000329342 1740 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
CIITAP33076 MAGEA3-201ENST00000370278 1724 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
CIITAP33076 LGI2-201ENST00000382114 6428 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
CIITAP33076 TM9SF1-206ENST00000528669 2425 ntTSL 5 BASIC20.58■□□□□ 0.89
CIITAP33076 AC093677.2-201ENST00000600169 1863 ntBASIC20.58■□□□□ 0.89
CIITAP33076 CCDC74A-206ENST00000467992 1347 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.89
CIITAP33076 SAMD11-210ENST00000616016 2391 ntTSL 5 BASIC20.58■□□□□ 0.89
CIITAP33076 SAMD11-215ENST00000618779 2368 ntAPPRIS ALT2 TSL 5 BASIC20.58■□□□□ 0.89
CIITAP33076 UBE2I-207ENST00000406620 1842 ntAPPRIS P1 TSL 2 BASIC20.58■□□□□ 0.89
CIITAP33076 ANKRD24-201ENST00000262970 3711 ntAPPRIS ALT2 TSL 5 BASIC20.58■□□□□ 0.89
CIITAP33076 MARK1-203ENST00000402574 5273 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
CIITAP33076 JMJD6-202ENST00000397625 1603 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
CIITAP33076 CHRAC1-201ENST00000220913 2488 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
CIITAP33076 PGLS-201ENST00000252603 1028 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
CIITAP33076 HIST1H2AI-201ENST00000358739 503 ntAPPRIS P1 BASIC20.58■□□□□ 0.89
CIITAP33076 DDT-202ENST00000398344 713 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
CIITAP33076 UBE2J2-205ENST00000400930 1021 ntTSL 5 BASIC20.58■□□□□ 0.89
CIITAP33076 DDT-203ENST00000403754 569 ntTSL 3 BASIC20.58■□□□□ 0.89
CIITAP33076 DDT-206ENST00000430101 573 ntTSL 2 BASIC20.58■□□□□ 0.89
CIITAP33076 LBX1-AS1-204ENST00000456391 421 ntTSL 5 BASIC20.58■□□□□ 0.89
CIITAP33076 AC051649.1-201ENST00000509204 330 ntTSL 3 BASIC20.58■□□□□ 0.89
CIITAP33076 NMU-205ENST00000511469 756 ntTSL 3 BASIC20.58■□□□□ 0.89
CIITAP33076 MIR3180-1-201ENST00000580374 94 ntBASIC20.58■□□□□ 0.89
CIITAP33076 AC090616.6-201ENST00000582640 721 ntBASIC20.58■□□□□ 0.89
CIITAP33076 MIR3180-3-201ENST00000584616 94 ntBASIC20.58■□□□□ 0.89
CIITAP33076 BCL10-202ENST00000620248 774 ntTSL 5 BASIC20.58■□□□□ 0.89
CIITAP33076 TTLL10-203ENST00000379290 2283 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
CIITAP33076 JMJD7-201ENST00000397299 1416 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
CIITAP33076 IGFBP4-201ENST00000269593 2200 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
CIITAP33076 RHOV-201ENST00000220507 1705 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
CIITAP33076 RAB28-202ENST00000330852 1715 ntAPPRIS ALT1 TSL 1 (best) BASIC20.58■□□□□ 0.88
CIITAP33076 CD1E-205ENST00000368160 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.88
CIITAP33076 GLYCTK-201ENST00000305690 1371 ntTSL 5 BASIC20.58■□□□□ 0.88
CIITAP33076 AP001476.1-201ENST00000451618 2198 ntTSL 2 BASIC20.58■□□□□ 0.88
CIITAP33076 GNAS-AS1-202ENST00000443966 2341 ntTSL 5 BASIC20.58■□□□□ 0.88
CIITAP33076 PPP2R5A-201ENST00000261461 3128 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
CIITAP33076 CDK11A-205ENST00000378633 2458 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
CIITAP33076 RHOT1-202ENST00000354266 2919 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
CIITAP33076 ZCWPW1-201ENST00000360951 2110 ntAPPRIS ALT2 TSL 2 BASIC20.57■□□□□ 0.88
CIITAP33076 AC093010.1-201ENST00000473625 1624 ntBASIC20.57■□□□□ 0.88
CIITAP33076 ADCK5-201ENST00000308860 1949 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
CIITAP33076 MED9-201ENST00000268711 2228 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
CIITAP33076 NUMBL-207ENST00000598779 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
CIITAP33076 SNX4-201ENST00000251775 2513 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
CIITAP33076 KLHL40-201ENST00000287777 2517 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
CIITAP33076 CCNJ-202ENST00000403870 2830 ntTSL 5 BASIC20.57■□□□□ 0.88
CIITAP33076 CD320-201ENST00000301458 1250 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
CIITAP33076 EFCAB2-203ENST00000366523 1233 ntAPPRIS P1 TSL 3 BASIC20.57■□□□□ 0.88
CIITAP33076 RAP1B-229ENST00000543393 874 ntTSL 3 BASIC20.57■□□□□ 0.88
CIITAP33076 AL161669.1-201ENST00000559843 386 ntTSL 3 BASIC20.57■□□□□ 0.88
CIITAP33076 PSMD8-207ENST00000592035 1581 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
CIITAP33076 MYO15B-232ENST00000610510 9195 ntAPPRIS P1 TSL 5 BASIC20.57■□□□□ 0.88
CIITAP33076 PLA2G2F-201ENST00000375102 2723 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
CIITAP33076 CBX1-202ENST00000393408 2422 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
CIITAP33076 SMARCD3-202ENST00000356800 1669 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
CIITAP33076 CDK2AP2-201ENST00000301488 1378 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
CIITAP33076 DISC1-204ENST00000366633 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
CIITAP33076 DISC1-214ENST00000539444 2658 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
CIITAP33076 ARHGEF2-204ENST00000368315 1645 ntTSL 5 BASIC20.56■□□□□ 0.88
CIITAP33076 KANSL1L-203ENST00000418791 3562 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
CIITAP33076 CACNA1A-246ENST00000637736 8340 ntAPPRIS ALT2 TSL 5 BASIC20.56■□□□□ 0.88
CIITAP33076 FOXP1-214ENST00000493089 2703 ntAPPRIS ALT1 TSL 2 BASIC20.56■□□□□ 0.88
CIITAP33076 SHBG-201ENST00000340624 1311 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
CIITAP33076 SMARCC2-201ENST00000267064 4076 ntAPPRIS P4 TSL 1 (best) BASIC20.56■□□□□ 0.88
CIITAP33076 AC008687.8-201ENST00000599795 1748 ntAPPRIS P1 TSL 2 BASIC20.56■□□□□ 0.88
CIITAP33076 PDE6B-202ENST00000429163 2120 ntTSL 2 BASIC20.56■□□□□ 0.88
CIITAP33076 PTPA-204ENST00000355007 2515 ntTSL 5 BASIC20.56■□□□□ 0.88
CIITAP33076 KCNQ2-218ENST00000629676 2399 ntTSL 5 BASIC20.56■□□□□ 0.88
CIITAP33076 AC093734.1-201ENST00000416100 242 ntTSL 3 BASIC20.56■□□□□ 0.88
CIITAP33076 AC011511.2-201ENST00000592893 918 ntTSL 3 BASIC20.56■□□□□ 0.88
CIITAP33076 AC009113.1-201ENST00000570267 2443 ntBASIC20.56■□□□□ 0.88
CIITAP33076 NEUROD2-201ENST00000302584 2041 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
CIITAP33076 PRODH-205ENST00000420436 2034 ntAPPRIS ALT2 TSL 2 BASIC20.56■□□□□ 0.88
CIITAP33076 CTSD-212ENST00000637815 2003 ntAPPRIS ALT2 TSL 5 BASIC20.56■□□□□ 0.88
CIITAP33076 DKK3-202ENST00000396505 2650 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
CIITAP33076 SERPINF2-201ENST00000324015 2284 ntAPPRIS P1 TSL 5 BASIC20.56■□□□□ 0.88
CIITAP33076 UAP1-204ENST00000367926 2294 ntAPPRIS P3 TSL 1 (best) BASIC20.56■□□□□ 0.88
CIITAP33076 KRT8-216ENST00000552551 2126 ntAPPRIS P1 TSL 2 BASIC20.56■□□□□ 0.88
CIITAP33076 TCERG1L-201ENST00000368642 2618 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
CIITAP33076 MVK-201ENST00000228510 1956 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
CIITAP33076 SLC22A17-204ENST00000397267 2455 ntAPPRIS P4 TSL 5 BASIC20.55■□□□□ 0.88
CIITAP33076 FBXL20-202ENST00000394294 2309 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
CIITAP33076 AC009041.2-204ENST00000568394 3343 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
CIITAP33076 CYTH1-209ENST00000589296 2159 ntTSL 5 BASIC20.55■□□□□ 0.88
CIITAP33076 RGS20-203ENST00000344277 1667 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
CIITAP33076 PRELID3A-203ENST00000587735 1694 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
CIITAP33076 AC120498.9-201ENST00000339021 3867 ntBASIC20.55■□□□□ 0.88
CIITAP33076 KCNS2-201ENST00000287042 5219 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
CIITAP33076 MTG1-205ENST00000477902 1283 ntTSL 3 BASIC20.55■□□□□ 0.88
CIITAP33076 BOC-211ENST00000484034 1286 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 58.5 ms