Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 SLC9A3R2-208ENST00000566198 1199 ntTSL 2 BASIC16.77■□□□□ 0.28
MSX1P28360 FXYD7-203ENST00000586063 456 ntAPPRIS ALT2 TSL 3 BASIC16.77■□□□□ 0.28
MSX1P28360 GPX4-210ENST00000611653 793 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
MSX1P28360 Metazoa_SRP.33-201ENST00000613468 285 ntBASIC16.77■□□□□ 0.28
MSX1P28360 PPP2R2C-206ENST00000507294 1667 ntTSL 2 BASIC16.77■□□□□ 0.28
MSX1P28360 ZNF692-204ENST00000451251 2065 ntAPPRIS ALT2 TSL 2 BASIC16.77■□□□□ 0.27
MSX1P28360 ALDH5A1-201ENST00000348925 2266 ntAPPRIS P4 TSL 1 (best) BASIC16.77■□□□□ 0.27
MSX1P28360 TRIM41-202ENST00000351937 2696 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
MSX1P28360 WNT5B-203ENST00000537031 1437 ntAPPRIS P1 TSL 2 BASIC16.77■□□□□ 0.27
MSX1P28360 POMT2-201ENST00000261534 4876 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
MSX1P28360 WRB-201ENST00000333781 1616 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
MSX1P28360 ATP6V1D-201ENST00000216442 1845 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
MSX1P28360 HEBP2-204ENST00000607197 10014 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
MSX1P28360 DHRS12-201ENST00000218981 1970 ntTSL 2 BASIC16.77■□□□□ 0.27
MSX1P28360 AC126763.1-201ENST00000552015 2118 ntBASIC16.76■□□□□ 0.27
MSX1P28360 DIAPH1-201ENST00000253811 5789 ntAPPRIS ALT2 TSL 5 BASIC16.76■□□□□ 0.27
MSX1P28360 DIAPH1-202ENST00000389054 5795 ntAPPRIS P4 TSL 5 BASIC16.76■□□□□ 0.27
MSX1P28360 DIAPH1-204ENST00000398557 5789 ntAPPRIS ALT2 TSL 5 BASIC16.76■□□□□ 0.27
MSX1P28360 NR1H2-210ENST00000598168 1915 ntAPPRIS ALT2 TSL 5 BASIC16.76■□□□□ 0.27
MSX1P28360 ZSWIM8-213ENST00000603114 5919 ntTSL 5 BASIC16.76■□□□□ 0.27
MSX1P28360 LTBP3-217ENST00000530785 2461 ntTSL 2 BASIC16.76■□□□□ 0.27
MSX1P28360 SERPINH1-215ENST00000533603 2299 ntAPPRIS P1 TSL 2 BASIC16.76■□□□□ 0.27
MSX1P28360 RFXANK-205ENST00000456252 1325 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
MSX1P28360 CPAMD8-203ENST00000443236 5992 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
MSX1P28360 ARID3A-201ENST00000263620 5941 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
MSX1P28360 ADPGK-201ENST00000311669 2557 ntAPPRIS P1 TSL 2 BASIC16.76■□□□□ 0.27
MSX1P28360 SPTBN4-212ENST00000598249 8070 ntAPPRIS P2 TSL 1 (best) BASIC16.76■□□□□ 0.27
MSX1P28360 HSD17B10-201ENST00000168216 960 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
MSX1P28360 IGLL1-201ENST00000249053 716 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
MSX1P28360 ISCU-201ENST00000311893 994 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
MSX1P28360 GNG5-202ENST00000370645 790 ntAPPRIS P1 TSL 2 BASIC16.76■□□□□ 0.27
MSX1P28360 TSPY8-203ENST00000383005 435 ntTSL 5 BASIC16.76■□□□□ 0.27
MSX1P28360 ROMO1-205ENST00000397416 288 ntAPPRIS P1 TSL 3 BASIC16.76■□□□□ 0.27
MSX1P28360 AC026396.1-201ENST00000419388 421 ntBASIC16.76■□□□□ 0.27
MSX1P28360 PLPP5-202ENST00000422581 853 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
MSX1P28360 PVRIG2P-201ENST00000435460 978 ntBASIC16.76■□□□□ 0.27
MSX1P28360 SNHG7-203ENST00000436596 509 ntTSL 2 BASIC16.76■□□□□ 0.27
MSX1P28360 AP000347.1-209ENST00000437294 557 ntTSL 4 BASIC16.76■□□□□ 0.27
MSX1P28360 MRPL2-208ENST00000489623 570 ntTSL 2 BASIC16.76■□□□□ 0.27
MSX1P28360 LY6E-213ENST00000522528 606 ntTSL 3 BASIC16.76■□□□□ 0.27
MSX1P28360 AC008687.5-201ENST00000593746 558 ntBASIC16.76■□□□□ 0.27
MSX1P28360 LINC01785-201ENST00000598042 1112 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
MSX1P28360 SLF2-205ENST00000609386 891 ntAPPRIS ALT2 BASIC16.76■□□□□ 0.27
MSX1P28360 TAB2-209ENST00000637181 4230 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
MSX1P28360 GTF2IRD2-207ENST00000625377 1910 ntTSL 5 BASIC16.76■□□□□ 0.27
MSX1P28360 HOXA9-201ENST00000343483 2060 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
MSX1P28360 GRM2-204ENST00000442933 2064 ntTSL 5 BASIC16.76■□□□□ 0.27
MSX1P28360 JAG1-201ENST00000254958 6048 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
MSX1P28360 FOXL2-201ENST00000330315 2917 ntAPPRIS P1 BASIC16.76■□□□□ 0.27
MSX1P28360 NFATC1-201ENST00000253506 4642 ntAPPRIS P3 TSL 1 (best) BASIC16.76■□□□□ 0.27
MSX1P28360 LRRC36-201ENST00000329956 2395 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
MSX1P28360 NTMT1-211ENST00000617943 1346 ntTSL 3 BASIC16.75■□□□□ 0.27
MSX1P28360 PLIN5-201ENST00000381848 2470 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
MSX1P28360 LDHD-202ENST00000450168 1966 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
MSX1P28360 ZFC3H1-211ENST00000552037 1484 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
MSX1P28360 IGFALS-202ENST00000415638 2136 ntTSL 2 BASIC16.75■□□□□ 0.27
MSX1P28360 NDN-201ENST00000331837 1931 ntAPPRIS P1 BASIC16.75■□□□□ 0.27
MSX1P28360 LLGL2-203ENST00000392550 3509 ntAPPRIS P2 TSL 1 (best) BASIC16.75■□□□□ 0.27
MSX1P28360 USP48-204ENST00000400301 4309 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
MSX1P28360 TBC1D7-205ENST00000379307 1084 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
MSX1P28360 RNF144A-AS1-205ENST00000439208 757 ntTSL 3 BASIC16.75■□□□□ 0.27
MSX1P28360 CUTA-210ENST00000488034 769 ntAPPRIS ALT1 TSL 2 BASIC16.75■□□□□ 0.27
MSX1P28360 PLXND1-205ENST00000504689 546 ntTSL 3 BASIC16.75■□□□□ 0.27
MSX1P28360 AC022424.1-201ENST00000512155 889 ntTSL 3 BASIC16.75■□□□□ 0.27
MSX1P28360 REEP1-209ENST00000541910 969 ntTSL 2 BASIC16.75■□□□□ 0.27
MSX1P28360 C16orf74-206ENST00000602766 832 ntAPPRIS ALT2 TSL 3 BASIC16.75■□□□□ 0.27
MSX1P28360 GFOD2-207ENST00000602855 819 ntTSL 3 BASIC16.75■□□□□ 0.27
MSX1P28360 TXNDC12-205ENST00000610127 806 ntTSL 2 BASIC16.75■□□□□ 0.27
MSX1P28360 DFFB-212ENST00000625756 649 ntTSL 5 BASIC16.75■□□□□ 0.27
MSX1P28360 AL157888.1-201ENST00000631930 593 ntBASIC16.75■□□□□ 0.27
MSX1P28360 CLN6-214ENST00000636314 442 ntTSL 3 BASIC16.75■□□□□ 0.27
MSX1P28360 SPACA6-213ENST00000637797 1073 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
MSX1P28360 NDUFAB1-201ENST00000007516 717 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
MSX1P28360 MRM2-203ENST00000440306 1570 ntAPPRIS P1 TSL 5 BASIC16.75■□□□□ 0.27
MSX1P28360 KCNQ2-213ENST00000626839 9213 ntAPPRIS ALT1 TSL 1 (best) BASIC16.75■□□□□ 0.27
MSX1P28360 LDLRAD4-211ENST00000587757 2171 ntTSL 2 BASIC16.75■□□□□ 0.27
MSX1P28360 SIKE1-201ENST00000060969 2190 ntAPPRIS P3 TSL 1 (best) BASIC16.75■□□□□ 0.27
MSX1P28360 GFER-201ENST00000248114 2345 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
MSX1P28360 PKMYT1-203ENST00000431515 2308 ntTSL 2 BASIC16.75■□□□□ 0.27
MSX1P28360 ZNF211-204ENST00000347302 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
MSX1P28360 CDH22-201ENST00000372262 3661 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
MSX1P28360 ACSF3-202ENST00000378345 1541 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
MSX1P28360 FAM3A-201ENST00000322269 1815 ntTSL 5 BASIC16.75■□□□□ 0.27
MSX1P28360 ALKBH4-201ENST00000292566 2105 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
MSX1P28360 ADAMTS9-202ENST00000459780 2871 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
MSX1P28360 EPB41L4B-201ENST00000374557 4006 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
MSX1P28360 DOC2A-208ENST00000564944 1782 ntAPPRIS P1 TSL 5 BASIC16.74■□□□□ 0.27
MSX1P28360 FAM110A-201ENST00000246100 1619 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
MSX1P28360 CAB39-202ENST00000409788 1626 ntAPPRIS P1 TSL 2 BASIC16.74■□□□□ 0.27
MSX1P28360 KIAA1522-202ENST00000373480 5294 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
MSX1P28360 KIAA1522-203ENST00000373481 5293 ntAPPRIS ALT2 TSL 2 BASIC16.74■□□□□ 0.27
MSX1P28360 NOMO2-201ENST00000330537 4352 ntAPPRIS ALT2 TSL 5 BASIC16.74■□□□□ 0.27
MSX1P28360 PRSS23-209ENST00000533902 2043 ntTSL 4 BASIC16.74■□□□□ 0.27
MSX1P28360 GUCA1A-201ENST00000053469 1874 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
MSX1P28360 AC020763.4-201ENST00000623414 4170 ntBASIC16.74■□□□□ 0.27
MSX1P28360 CA7-202ENST00000394069 1713 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
MSX1P28360 ELL2-201ENST00000237853 6046 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
MSX1P28360 USP49-202ENST00000373010 2446 ntTSL 5 BASIC16.74■□□□□ 0.27
MSX1P28360 FAM187B-201ENST00000324675 1184 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
MSX1P28360 FXN-203ENST00000396366 922 ntTSL 2 BASIC16.74■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 43 ms