Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 TNNT3-203ENST00000381557 1019 ntAPPRIS ALT2 TSL 5 BASIC23.01■■□□□ 1.27
COL5A3P25940 KRT18P3-201ENST00000451602 1288 ntBASIC23.01■■□□□ 1.27
COL5A3P25940 AC004967.1-201ENST00000453589 447 ntBASIC23.01■■□□□ 1.27
COL5A3P25940 AL133375.1-201ENST00000500590 980 ntTSL 5 BASIC23.01■■□□□ 1.27
COL5A3P25940 AC007193.2-201ENST00000596807 472 ntTSL 3 BASIC23.01■■□□□ 1.27
COL5A3P25940 SLC16A3-221ENST00000617373 2048 ntAPPRIS P1 TSL 5 BASIC23.01■■□□□ 1.27
COL5A3P25940 SLC16A3-222ENST00000619321 2015 ntAPPRIS P1 TSL 5 BASIC23.01■■□□□ 1.27
COL5A3P25940 GRK4-203ENST00000398052 2202 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
COL5A3P25940 TCEAL4-201ENST00000372629 1511 ntAPPRIS ALT2 TSL 1 (best) BASIC23.01■■□□□ 1.27
COL5A3P25940 HOXC6-201ENST00000243108 1733 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
COL5A3P25940 C16orf59-210ENST00000569496 1911 ntAPPRIS ALT2 TSL 5 BASIC23■■□□□ 1.27
COL5A3P25940 AC073621.1-201ENST00000392730 636 ntBASIC23■■□□□ 1.27
COL5A3P25940 ZNF655-215ENST00000440391 1198 ntTSL 2 BASIC23■■□□□ 1.27
COL5A3P25940 TPD52L1-211ENST00000532429 1022 ntTSL 2 BASIC23■■□□□ 1.27
COL5A3P25940 NKAPP1-205ENST00000585790 367 ntBASIC23■■□□□ 1.27
COL5A3P25940 C16orf70-208ENST00000569600 1353 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
COL5A3P25940 SDCBP2-204ENST00000381812 1550 ntAPPRIS P1 TSL 5 BASIC23■■□□□ 1.27
COL5A3P25940 AL079301.1-201ENST00000424580 1633 ntTSL 2 BASIC23■■□□□ 1.27
COL5A3P25940 RUSC1-214ENST00000490373 1700 ntTSL 1 (best) BASIC23■■□□□ 1.27
COL5A3P25940 ARSA-203ENST00000395619 1824 ntAPPRIS P1 TSL 5 BASIC23■■□□□ 1.27
COL5A3P25940 SEH1L-202ENST00000399892 1846 ntTSL 1 (best) BASIC23■■□□□ 1.27
COL5A3P25940 CPEB2-202ENST00000345451 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC23■■□□□ 1.27
COL5A3P25940 PTGIR-201ENST00000291294 2107 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
COL5A3P25940 SDCBP2-201ENST00000339987 1404 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
COL5A3P25940 CHEK2-202ENST00000348295 1771 ntTSL 5 BASIC22.99■■□□□ 1.27
COL5A3P25940 SYCE1-203ENST00000368517 1377 ntAPPRIS P3 TSL 5 BASIC22.99■■□□□ 1.27
COL5A3P25940 RPL13P5-202ENST00000412023 1438 ntTSL 2 BASIC22.99■■□□□ 1.27
COL5A3P25940 ARHGAP22-204ENST00000417247 2340 ntTSL 2 BASIC22.99■■□□□ 1.27
COL5A3P25940 AC009947.1-201ENST00000444350 727 ntBASIC22.99■■□□□ 1.27
COL5A3P25940 DNAJB3-202ENST00000449667 1266 ntBASIC22.99■■□□□ 1.27
COL5A3P25940 FAM193B-217ENST00000514747 2913 ntAPPRIS P1 TSL 5 BASIC22.99■■□□□ 1.27
COL5A3P25940 DHDH-204ENST00000523250 634 ntTSL 5 BASIC22.99■■□□□ 1.27
COL5A3P25940 MVB12A-211ENST00000529939 1091 ntTSL 3 BASIC22.99■■□□□ 1.27
COL5A3P25940 LINC01413-201ENST00000564843 772 ntTSL 3 BASIC22.99■■□□□ 1.27
COL5A3P25940 TMUB2-213ENST00000589856 1505 ntTSL 2 BASIC22.99■■□□□ 1.27
COL5A3P25940 AC008687.7-201ENST00000593309 920 ntTSL 1 (best) BASIC22.99■■□□□ 1.27
COL5A3P25940 COPE-211ENST00000600932 1144 ntTSL 5 BASIC22.99■■□□□ 1.27
COL5A3P25940 KRT8P47-201ENST00000604727 1398 ntBASIC22.99■■□□□ 1.27
COL5A3P25940 MON1A-202ENST00000417270 2527 ntAPPRIS ALT2 TSL 5 BASIC22.99■■□□□ 1.27
COL5A3P25940 LINC00602-201ENST00000629776 2065 ntBASIC22.99■■□□□ 1.27
COL5A3P25940 EXO5-202ENST00000358527 1892 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
COL5A3P25940 ATPIF1-202ENST00000465645 1855 ntTSL 1 (best) BASIC22.99■■□□□ 1.27
COL5A3P25940 PRELID3B-201ENST00000355937 2626 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
COL5A3P25940 LCE1B-201ENST00000360090 1139 ntAPPRIS P1 BASIC22.99■■□□□ 1.27
COL5A3P25940 AC002347.1-201ENST00000569543 541 ntBASIC22.99■■□□□ 1.27
COL5A3P25940 AL355385.1-201ENST00000606123 409 ntBASIC22.99■■□□□ 1.27
COL5A3P25940 AL691447.2-201ENST00000454869 2162 ntTSL 2 BASIC22.99■■□□□ 1.27
COL5A3P25940 YY1AP1-213ENST00000405763 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC22.99■■□□□ 1.27
COL5A3P25940 PPP1R26-201ENST00000356818 4932 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
COL5A3P25940 HSPA1A-202ENST00000608703 1909 ntTSL 2 BASIC22.98■■□□□ 1.27
COL5A3P25940 GFI1B-208ENST00000636263 1604 ntTSL 5 BASIC22.98■■□□□ 1.27
COL5A3P25940 SMPD3-203ENST00000563226 2093 ntTSL 1 (best) BASIC22.98■■□□□ 1.27
COL5A3P25940 INIP-202ENST00000374236 874 ntTSL 2 BASIC22.98■■□□□ 1.27
COL5A3P25940 HCCS-202ENST00000380762 1072 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
COL5A3P25940 AC021188.1-201ENST00000421534 740 ntTSL 3 BASIC22.98■■□□□ 1.27
COL5A3P25940 CRCP-205ENST00000431089 942 ntTSL 2 BASIC22.98■■□□□ 1.27
COL5A3P25940 LINC00595-207ENST00000476909 792 ntTSL 2 BASIC22.98■■□□□ 1.27
COL5A3P25940 RNA5SP416-201ENST00000516838 111 ntBASIC22.98■■□□□ 1.27
COL5A3P25940 ABO-202ENST00000538324 1147 ntAPPRIS P5 TSL 5 BASIC22.98■■□□□ 1.27
COL5A3P25940 AC105339.3-201ENST00000560043 636 ntBASIC22.98■■□□□ 1.27
COL5A3P25940 SDCCAG3P1-201ENST00000589292 1150 ntBASIC22.98■■□□□ 1.27
COL5A3P25940 MID1IP1-202ENST00000378474 1889 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
COL5A3P25940 MED15P9-202ENST00000427638 1841 ntTSL 1 (best) BASIC22.98■■□□□ 1.27
COL5A3P25940 AMDHD2-203ENST00000413459 2049 ntTSL 2 BASIC22.98■■□□□ 1.27
COL5A3P25940 AOC1-202ENST00000416793 2453 ntTSL 1 (best) BASIC22.98■■□□□ 1.27
COL5A3P25940 OGFOD2-207ENST00000536150 1956 ntTSL 2 BASIC22.98■■□□□ 1.27
COL5A3P25940 USP39-202ENST00000409025 1946 ntTSL 5 BASIC22.97■■□□□ 1.27
COL5A3P25940 C11orf80-203ENST00000525449 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC22.97■■□□□ 1.27
COL5A3P25940 FAM157B-201ENST00000446912 1795 ntTSL 2 BASIC22.97■■□□□ 1.27
COL5A3P25940 FIP1L1-207ENST00000507922 1335 ntTSL 1 (best) BASIC22.97■■□□□ 1.27
COL5A3P25940 PMP22-202ENST00000395936 816 ntTSL 3 BASIC22.97■■□□□ 1.27
COL5A3P25940 DNAJB3-201ENST00000446806 729 ntBASIC22.97■■□□□ 1.27
COL5A3P25940 PP7080-203ENST00000510604 859 ntTSL 1 (best) BASIC22.97■■□□□ 1.27
COL5A3P25940 SLC26A1-205ENST00000622731 1057 ntTSL 5 BASIC22.97■■□□□ 1.27
COL5A3P25940 RUVBL2-206ENST00000595090 2009 ntAPPRIS P1 TSL 1 (best) BASIC22.97■■□□□ 1.27
COL5A3P25940 LINC01123-202ENST00000419296 2436 ntTSL 2 BASIC22.97■■□□□ 1.27
COL5A3P25940 NADK2-206ENST00000506945 1437 ntTSL 2 BASIC22.97■■□□□ 1.27
COL5A3P25940 SIGLEC16-201ENST00000599858 1437 ntBASIC22.97■■□□□ 1.27
COL5A3P25940 CHRNG-201ENST00000389492 1398 ntTSL 1 (best) BASIC22.97■■□□□ 1.27
COL5A3P25940 CLDN5-201ENST00000403084 2357 ntBASIC22.97■■□□□ 1.27
COL5A3P25940 CCDC62-204ENST00000392441 2936 ntAPPRIS ALT2 TSL 5 BASIC22.97■■□□□ 1.27
COL5A3P25940 NECTIN1-202ENST00000340882 1059 ntTSL 1 (best) BASIC22.96■■□□□ 1.27
COL5A3P25940 ANKRD13D-218ENST00000515828 1111 ntTSL 1 (best) BASIC22.96■■□□□ 1.27
COL5A3P25940 LINC01842-201ENST00000588275 768 ntTSL 1 (best) BASIC22.96■■□□□ 1.27
COL5A3P25940 AC073592.4-201ENST00000623827 446 ntBASIC22.96■■□□□ 1.27
COL5A3P25940 LRWD1-201ENST00000292616 2215 ntAPPRIS P1 TSL 1 (best) BASIC22.96■■□□□ 1.27
COL5A3P25940 ACHE-204ENST00000412389 2218 ntAPPRIS P1 TSL 1 (best) BASIC22.96■■□□□ 1.27
COL5A3P25940 AL606970.3-201ENST00000446811 2246 ntTSL 2 BASIC22.96■■□□□ 1.27
COL5A3P25940 AC010460.3-201ENST00000511359 1579 ntBASIC22.96■■□□□ 1.27
COL5A3P25940 SDC1-203ENST00000403076 1523 ntTSL 1 (best) BASIC22.96■■□□□ 1.27
COL5A3P25940 AC009041.2-206ENST00000563863 1728 ntTSL 2 BASIC22.96■■□□□ 1.27
COL5A3P25940 TRIM7-205ENST00000422067 1954 ntTSL 1 (best) BASIC22.96■■□□□ 1.27
COL5A3P25940 STARD3-219ENST00000580611 1989 ntTSL 5 BASIC22.96■■□□□ 1.27
COL5A3P25940 PDE9A-205ENST00000349112 1616 ntTSL 1 (best) BASIC22.96■■□□□ 1.27
COL5A3P25940 ATOH8-201ENST00000306279 2438 ntAPPRIS P1 TSL 1 (best) BASIC22.96■■□□□ 1.27
COL5A3P25940 PLEKHA2-206ENST00000521746 2127 ntTSL 5 BASIC22.96■■□□□ 1.27
COL5A3P25940 GNAI1-201ENST00000351004 3347 ntAPPRIS P1 TSL 1 (best) BASIC22.96■■□□□ 1.27
COL5A3P25940 LINC02123-201ENST00000514869 885 ntTSL 1 (best) BASIC22.96■■□□□ 1.27
COL5A3P25940 GMDS-AS1-205ENST00000529893 900 ntTSL 5 BASIC22.96■■□□□ 1.27
COL5A3P25940 ATP6V0D1-203ENST00000540149 1262 ntTSL 2 BASIC22.96■■□□□ 1.27
Retrieved 100 of 98,524 protein–RNA pairs in 28.6 ms