Protein–RNA interactions for Protein: P01130

LDLR, Low-density lipoprotein receptor, humanhuman

Predictions only

Length 860 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDLRP01130 CDH24-201ENST00000267383 2873 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
LDLRP01130 FARP2-202ENST00000373287 2580 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
LDLRP01130 PPAN-P2RY11-201ENST00000393796 2385 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
LDLRP01130 ANKRD18DP-201ENST00000335478 2171 ntTSL 2 BASIC17.72■□□□□ 0.43
LDLRP01130 METTL21A-201ENST00000272839 1210 ntTSL 5 BASIC17.72■□□□□ 0.43
LDLRP01130 PRICKLE4-202ENST00000394260 1035 ntAPPRIS ALT2 TSL 2 BASIC17.72■□□□□ 0.43
LDLRP01130 PRICKLE4-203ENST00000394263 1155 ntAPPRIS P2 TSL 5 BASIC17.72■□□□□ 0.43
LDLRP01130 MCRIP1-201ENST00000455127 1209 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
LDLRP01130 NPM2-204ENST00000518119 1190 ntAPPRIS P2 TSL 1 (best) BASIC17.72■□□□□ 0.43
LDLRP01130 AC022616.7-201ENST00000525383 220 ntBASIC17.72■□□□□ 0.43
LDLRP01130 TESC-AS1-201ENST00000547006 1053 ntTSL 2 BASIC17.72■□□□□ 0.43
LDLRP01130 C2orf69P3-201ENST00000565542 1120 ntBASIC17.72■□□□□ 0.43
LDLRP01130 ELF3-201ENST00000359651 4994 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
LDLRP01130 RXRB-202ENST00000374685 2846 ntAPPRIS ALT1 TSL 1 (best) BASIC17.72■□□□□ 0.43
LDLRP01130 PHKG1-205ENST00000452681 2226 ntTSL 2 BASIC17.72■□□□□ 0.43
LDLRP01130 SLC5A10-204ENST00000395647 2140 ntTSL 2 BASIC17.72■□□□□ 0.43
LDLRP01130 PDCD7-201ENST00000204549 2851 ntAPPRIS P2 TSL 1 (best) BASIC17.72■□□□□ 0.43
LDLRP01130 KTI12-201ENST00000371614 1714 ntAPPRIS P1 BASIC17.72■□□□□ 0.43
LDLRP01130 MECP2-205ENST00000453960 1729 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
LDLRP01130 NPBWR1-201ENST00000331251 2687 ntAPPRIS P1 BASIC17.72■□□□□ 0.43
LDLRP01130 TUBA8-201ENST00000316027 1518 ntTSL 2 BASIC17.72■□□□□ 0.43
LDLRP01130 SAAL1-204ENST00000529318 1503 ntAPPRIS ALT1 TSL 5 BASIC17.72■□□□□ 0.43
LDLRP01130 NR2C2-206ENST00000425241 2494 ntAPPRIS P1 TSL 2 BASIC17.72■□□□□ 0.43
LDLRP01130 C6orf89-203ENST00000373685 1400 ntAPPRIS ALT2 TSL 5 BASIC17.72■□□□□ 0.43
LDLRP01130 CCAR2-214ENST00000613179 1421 ntTSL 5 BASIC17.72■□□□□ 0.43
LDLRP01130 DMRT3-201ENST00000190165 2183 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
LDLRP01130 ACTN3-203ENST00000513398 2939 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
LDLRP01130 DCAKD-208ENST00000614054 2054 ntAPPRIS P1 TSL 2 BASIC17.71■□□□□ 0.43
LDLRP01130 FAM222A-201ENST00000358906 2731 ntAPPRIS P1 TSL 5 BASIC17.71■□□□□ 0.43
LDLRP01130 KREMEN2-206ENST00000575885 1798 ntTSL 2 BASIC17.71■□□□□ 0.43
LDLRP01130 PDLIM7-203ENST00000359895 1567 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
LDLRP01130 AC005906.2-207ENST00000639005 1580 ntTSL 5 BASIC17.71■□□□□ 0.43
LDLRP01130 MFSD14A-201ENST00000370152 2777 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
LDLRP01130 TDRKH-207ENST00000458431 2768 ntAPPRIS P2 TSL 1 (best) BASIC17.71■□□□□ 0.43
LDLRP01130 TMEM198-201ENST00000344458 2393 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
LDLRP01130 SP3-203ENST00000418194 3937 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
LDLRP01130 NDUFB10-201ENST00000268668 705 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
LDLRP01130 RHEBL1-201ENST00000301068 1210 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
LDLRP01130 RTL8A-201ENST00000370775 1244 ntAPPRIS P1 BASIC17.71■□□□□ 0.43
LDLRP01130 AC115618.1-201ENST00000376775 549 ntTSL 3 BASIC17.71■□□□□ 0.43
LDLRP01130 ISCU-202ENST00000392807 1069 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
LDLRP01130 AK4P3-201ENST00000418260 669 ntBASIC17.71■□□□□ 0.43
LDLRP01130 ISCU-203ENST00000431221 799 ntTSL 2 BASIC17.71■□□□□ 0.43
LDLRP01130 FAM41C-202ENST00000432963 504 ntTSL 2 BASIC17.71■□□□□ 0.43
LDLRP01130 AL445645.1-201ENST00000451318 1019 ntTSL 2 BASIC17.71■□□□□ 0.43
LDLRP01130 KRT18P56-201ENST00000507275 550 ntBASIC17.71■□□□□ 0.43
LDLRP01130 ANKRD34C-AS1-203ENST00000559225 528 ntTSL 4 BASIC17.71■□□□□ 0.43
LDLRP01130 GCHFR-205ENST00000559932 695 ntTSL 2 BASIC17.71■□□□□ 0.43
LDLRP01130 PTPRU-202ENST00000373779 5579 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
LDLRP01130 PRSS35-201ENST00000369700 2440 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
LDLRP01130 PARS2-201ENST00000371279 2347 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
LDLRP01130 FAM135A-209ENST00000505769 4806 ntTSL 5 BASIC17.71■□□□□ 0.43
LDLRP01130 ADAMTS16-203ENST00000511368 2682 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
LDLRP01130 ZFC3H1-206ENST00000548100 1771 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
LDLRP01130 TYMS-201ENST00000323224 1327 ntTSL 1 (best) BASIC17.71■□□□□ 0.42
LDLRP01130 NDFIP1-201ENST00000253814 3851 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.42
LDLRP01130 A4GALT-201ENST00000249005 2020 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.42
LDLRP01130 MFSD1-201ENST00000264266 1594 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
LDLRP01130 GCSH-201ENST00000315467 1597 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
LDLRP01130 SCARB2-223ENST00000640640 4608 ntTSL 5 BASIC17.7■□□□□ 0.42
LDLRP01130 SPERT-202ENST00000378966 1842 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
LDLRP01130 MEN1-203ENST00000337652 3162 ntAPPRIS P3 TSL 5 BASIC17.7■□□□□ 0.42
LDLRP01130 CDC73-201ENST00000367435 4969 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
LDLRP01130 RNPS1-202ENST00000320225 2241 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
LDLRP01130 DSCR9-201ENST00000454482 1644 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
LDLRP01130 CNOT6-202ENST00000393356 6303 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
LDLRP01130 ARNTL-205ENST00000403510 2745 ntTSL 2 BASIC17.7■□□□□ 0.42
LDLRP01130 TSPY8-201ENST00000287721 1161 ntAPPRIS P5 TSL 1 (best) BASIC17.7■□□□□ 0.42
LDLRP01130 GLI4-202ENST00000344692 1012 ntTSL 2 BASIC17.7■□□□□ 0.42
LDLRP01130 GPM6B-204ENST00000398361 1033 ntTSL 2 BASIC17.7■□□□□ 0.42
LDLRP01130 TSPY10-201ENST00000428845 1161 ntAPPRIS P5 TSL 1 (best) BASIC17.7■□□□□ 0.42
LDLRP01130 AL365259.1-203ENST00000451660 707 ntTSL 3 BASIC17.7■□□□□ 0.42
LDLRP01130 IMMP2L-207ENST00000452895 833 ntAPPRIS P1 TSL 5 BASIC17.7■□□□□ 0.42
LDLRP01130 TSPY3-203ENST00000457222 1161 ntAPPRIS P5 TSL 1 (best) BASIC17.7■□□□□ 0.42
LDLRP01130 AC063952.2-201ENST00000498792 1227 ntBASIC17.7■□□□□ 0.42
LDLRP01130 METRN-205ENST00000568415 612 ntAPPRIS ALT2 TSL 3 BASIC17.7■□□□□ 0.42
LDLRP01130 SPINK2-207ENST00000631082 392 ntTSL 5 BASIC17.7■□□□□ 0.42
LDLRP01130 KRT18-202ENST00000388837 1420 ntAPPRIS P1 TSL 5 BASIC17.7■□□□□ 0.42
LDLRP01130 GOLGA6L3-201ENST00000507199 1679 ntBASIC17.7■□□□□ 0.42
LDLRP01130 SPON2-203ENST00000431380 1802 ntAPPRIS P1 TSL 5 BASIC17.7■□□□□ 0.42
LDLRP01130 IFRD1-201ENST00000005558 1834 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
LDLRP01130 SLC25A15-201ENST00000338625 1586 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
LDLRP01130 TCEA1-208ENST00000521604 2858 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
LDLRP01130 TFCP2-205ENST00000549867 1727 ntTSL 5 BASIC17.69■□□□□ 0.42
LDLRP01130 REPS1-202ENST00000367663 2607 ntAPPRIS ALT1 TSL 5 BASIC17.69■□□□□ 0.42
LDLRP01130 RELL2-201ENST00000297164 2520 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
LDLRP01130 DDX31-201ENST00000310532 2408 ntTSL 2 BASIC17.69■□□□□ 0.42
LDLRP01130 SELENOF-201ENST00000331835 1781 ntAPPRIS P2 TSL 1 (best) BASIC17.69■□□□□ 0.42
LDLRP01130 MUTYH-202ENST00000355498 1776 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
LDLRP01130 HOXD11-201ENST00000249504 1533 ntAPPRIS P1 TSL 3 BASIC17.69■□□□□ 0.42
LDLRP01130 CAPN5-205ENST00000529629 2333 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
LDLRP01130 UBFD1-201ENST00000395878 5110 ntAPPRIS P2 TSL 2 BASIC17.69■□□□□ 0.42
LDLRP01130 HOXA6-201ENST00000222728 989 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
LDLRP01130 GPR6-201ENST00000275169 1089 ntAPPRIS P1 BASIC17.69■□□□□ 0.42
LDLRP01130 TMEM223-201ENST00000307366 1288 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
LDLRP01130 SLC25A48-202ENST00000412661 1148 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
LDLRP01130 SLC25A48-204ENST00000433282 1111 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
LDLRP01130 ECEL1P2-202ENST00000465689 757 ntBASIC17.69■□□□□ 0.42
LDLRP01130 TMEM185A-204ENST00000507237 903 ntTSL 2 BASIC17.69■□□□□ 0.42
LDLRP01130 ATP6V0E1-204ENST00000519911 718 ntTSL 2 BASIC17.69■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 33.8 ms