Protein–RNA interactions for Protein: O75056

SDC3, Syndecan-3, humanhuman

Predictions only

Length 442 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3O75056 PAX3-208ENST00000409828 1254 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
SDC3O75056 EIF5A2-203ENST00000474096 570 ntTSL 4 BASIC17.89■□□□□ 0.45
SDC3O75056 AC096582.2-201ENST00000510860 516 ntBASIC17.89■□□□□ 0.45
SDC3O75056 NDUFB9-204ENST00000518008 789 ntTSL 2 BASIC17.89■□□□□ 0.45
SDC3O75056 AF238378.1-201ENST00000526806 358 ntBASIC17.89■□□□□ 0.45
SDC3O75056 IGHV3OR16-7-201ENST00000604106 360 ntBASIC17.89■□□□□ 0.45
SDC3O75056 REXO1L6P-202ENST00000619970 1078 ntBASIC17.89■□□□□ 0.45
SDC3O75056 ECEL1-201ENST00000304546 2865 ntAPPRIS P3 TSL 1 (best) BASIC17.89■□□□□ 0.45
SDC3O75056 FOXL2-201ENST00000330315 2917 ntAPPRIS P1 BASIC17.89■□□□□ 0.45
SDC3O75056 P2RY2-201ENST00000311131 2660 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
SDC3O75056 RCCD1-201ENST00000394258 2689 ntAPPRIS P2 TSL 1 (best) BASIC17.89■□□□□ 0.45
SDC3O75056 OSMR-202ENST00000502536 1740 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
SDC3O75056 TRMT2A-203ENST00000404751 2498 ntAPPRIS ALT2 TSL 2 BASIC17.89■□□□□ 0.45
SDC3O75056 EGLN2-201ENST00000303961 2102 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
SDC3O75056 GPR75-201ENST00000394705 2115 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
SDC3O75056 P2RY6-207ENST00000538328 1425 ntAPPRIS P1 TSL 3 BASIC17.89■□□□□ 0.45
SDC3O75056 TWIST2-202ENST00000612363 1404 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
SDC3O75056 ANXA8L1-201ENST00000584982 2174 ntTSL 2 BASIC17.89■□□□□ 0.45
SDC3O75056 SYNM-202ENST00000336292 7394 ntAPPRIS P4 TSL 1 (best) BASIC17.88■□□□□ 0.45
SDC3O75056 MRGPRF-201ENST00000309099 2295 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
SDC3O75056 CNTNAP3B-202ENST00000341990 2666 ntTSL 2 BASIC17.88■□□□□ 0.45
SDC3O75056 PITX2-201ENST00000306732 2320 ntAPPRIS P4 TSL 1 (best) BASIC17.88■□□□□ 0.45
SDC3O75056 DLK2-203ENST00000372488 1590 ntAPPRIS P3 TSL 1 (best) BASIC17.88■□□□□ 0.45
SDC3O75056 WWC1-201ENST00000265293 7130 ntAPPRIS P3 TSL 1 (best) BASIC17.88■□□□□ 0.45
SDC3O75056 C16orf70-201ENST00000219139 2865 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
SDC3O75056 AC138696.1-201ENST00000522452 2897 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
SDC3O75056 LDHD-201ENST00000300051 2067 ntAPPRIS P3 TSL 1 (best) BASIC17.88■□□□□ 0.45
SDC3O75056 EXOSC4-201ENST00000316052 887 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
SDC3O75056 TMEM89-201ENST00000330862 662 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
SDC3O75056 PRSS38-201ENST00000366757 1267 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
SDC3O75056 RAB24-204ENST00000393611 1236 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
SDC3O75056 TP53TG1-202ENST00000416560 710 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
SDC3O75056 SMN1-203ENST00000503079 1219 ntTSL 5 BASIC17.88■□□□□ 0.45
SDC3O75056 COX6C-204ENST00000520271 571 ntAPPRIS P1 TSL 2 BASIC17.88■□□□□ 0.45
SDC3O75056 AP001453.1-201ENST00000534988 923 ntTSL 3 BASIC17.88■□□□□ 0.45
SDC3O75056 PAQR4-204ENST00000574988 869 ntTSL 2 BASIC17.88■□□□□ 0.45
SDC3O75056 AC087289.1-201ENST00000586808 890 ntTSL 5 BASIC17.88■□□□□ 0.45
SDC3O75056 MUC1-224ENST00000611577 1023 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
SDC3O75056 AC120114.3-201ENST00000611923 658 ntBASIC17.88■□□□□ 0.45
SDC3O75056 TP73-AS1-207ENST00000624167 988 ntBASIC17.88■□□□□ 0.45
SDC3O75056 VPS51-217ENST00000639871 243 ntTSL 5 BASIC17.88■□□□□ 0.45
SDC3O75056 ECSIT-202ENST00000270517 1700 ntAPPRIS P3 TSL 1 (best) BASIC17.88■□□□□ 0.45
SDC3O75056 CCDC47-202ENST00000403162 2195 ntAPPRIS P1 TSL 2 BASIC17.88■□□□□ 0.45
SDC3O75056 HLA-A-201ENST00000376802 1334 ntBASIC17.88■□□□□ 0.45
SDC3O75056 FOXN3-214ENST00000557258 2692 ntAPPRIS P3 TSL 1 (best) BASIC17.88■□□□□ 0.45
SDC3O75056 FBLN1-201ENST00000262722 2251 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
SDC3O75056 TMEM237-213ENST00000621467 1824 ntAPPRIS ALT2 TSL 1 (best) BASIC17.88■□□□□ 0.45
SDC3O75056 SOCS2-201ENST00000340600 2761 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
SDC3O75056 SMN1-204ENST00000506163 1445 ntAPPRIS ALT2 TSL 1 (best) BASIC17.88■□□□□ 0.45
SDC3O75056 ENDOV-225ENST00000522751 1475 ntTSL 5 BASIC17.88■□□□□ 0.45
SDC3O75056 SLC35B2-207ENST00000619636 2063 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
SDC3O75056 XYLT1-201ENST00000261381 9891 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
SDC3O75056 TDRP-203ENST00000523656 2622 ntTSL 5 BASIC17.87■□□□□ 0.45
SDC3O75056 C3orf70-201ENST00000335012 5901 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
SDC3O75056 KRT13-201ENST00000246635 1699 ntAPPRIS P4 TSL 1 (best) BASIC17.87■□□□□ 0.45
SDC3O75056 BAALC-203ENST00000309982 2831 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
SDC3O75056 ADAM33-202ENST00000356518 3677 ntAPPRIS P3 TSL 1 (best) BASIC17.87■□□□□ 0.45
SDC3O75056 NDUFB9-201ENST00000276689 711 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
SDC3O75056 PRMT2-201ENST00000291705 1011 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
SDC3O75056 TYMS-202ENST00000323250 693 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
SDC3O75056 SUV39H2-202ENST00000354919 1233 ntAPPRIS ALT2 TSL 5 BASIC17.87■□□□□ 0.45
SDC3O75056 DNASE1L2-202ENST00000382437 1222 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
SDC3O75056 DUSP15-204ENST00000398083 1212 ntTSL 5 BASIC17.87■□□□□ 0.45
SDC3O75056 MIR130B-201ENST00000498589 1093 ntTSL 5 BASIC17.87■□□□□ 0.45
SDC3O75056 RBM14-RBM4-203ENST00000500635 829 ntTSL 2 BASIC17.87■□□□□ 0.45
SDC3O75056 KRT18P41-201ENST00000518924 1277 ntBASIC17.87■□□□□ 0.45
SDC3O75056 MOK-208ENST00000519058 917 ntTSL 2 BASIC17.87■□□□□ 0.45
SDC3O75056 AC084125.4-201ENST00000580385 338 ntTSL 3 BASIC17.87■□□□□ 0.45
SDC3O75056 BNIP3P18-201ENST00000593976 575 ntBASIC17.87■□□□□ 0.45
SDC3O75056 BCL2L12-210ENST00000611631 1259 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
SDC3O75056 EML2-AS1-203ENST00000623430 886 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
SDC3O75056 GLYCTK-202ENST00000436784 1982 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
SDC3O75056 MFHAS1-201ENST00000276282 6414 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
SDC3O75056 TPSD1-201ENST00000211076 1499 ntAPPRIS P2 TSL 1 (best) BASIC17.87■□□□□ 0.45
SDC3O75056 VIPR2-202ENST00000377633 1491 ntTSL 2 BASIC17.87■□□□□ 0.45
SDC3O75056 MAPKAPK2-202ENST00000367103 2961 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
SDC3O75056 GPC5-201ENST00000377067 2957 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
SDC3O75056 CD72-201ENST00000259633 1548 ntAPPRIS P2 TSL 1 (best) BASIC17.87■□□□□ 0.45
SDC3O75056 SKOR2-202ENST00000425639 3899 ntAPPRIS ALT2 TSL 5 BASIC17.87■□□□□ 0.45
SDC3O75056 ALKBH5-203ENST00000541285 1605 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
SDC3O75056 CWH43-201ENST00000226432 2472 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
SDC3O75056 TPD52-209ENST00000518937 2856 ntTSL 2 BASIC17.86■□□□□ 0.45
SDC3O75056 NAT16-201ENST00000300303 2935 ntAPPRIS P2 TSL 2 BASIC17.86■□□□□ 0.45
SDC3O75056 MPZ-206ENST00000533357 1955 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
SDC3O75056 SMPD3-203ENST00000563226 2093 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
SDC3O75056 NKX2-1-202ENST00000498187 2338 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
SDC3O75056 AC008878.3-201ENST00000617428 4964 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
SDC3O75056 RNASEH2A-201ENST00000221486 1165 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
SDC3O75056 MIR149-201ENST00000384879 89 ntBASIC17.86■□□□□ 0.45
SDC3O75056 SLC9A3R1-202ENST00000413388 1285 ntTSL 2 BASIC17.86■□□□□ 0.45
SDC3O75056 FIGNL1-207ENST00000435566 593 ntTSL 4 BASIC17.86■□□□□ 0.45
SDC3O75056 PDCD6-207ENST00000509581 1156 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
SDC3O75056 RCHY1-208ENST00000512706 1011 ntTSL 3 BASIC17.86■□□□□ 0.45
SDC3O75056 ATP5G2-204ENST00000549164 745 ntAPPRIS P1 TSL 3 BASIC17.86■□□□□ 0.45
SDC3O75056 AC011455.1-201ENST00000593830 504 ntTSL 3 BASIC17.86■□□□□ 0.45
SDC3O75056 ATP5G2-209ENST00000602871 668 ntAPPRIS P1 TSL 2 BASIC17.86■□□□□ 0.45
SDC3O75056 DNASE1L2-206ENST00000613572 1260 ntAPPRIS P1 TSL 5 BASIC17.86■□□□□ 0.45
SDC3O75056 AC083906.6-201ENST00000641366 219 ntBASIC17.86■□□□□ 0.45
SDC3O75056 SDR39U1-206ENST00000553930 1325 ntTSL 5 BASIC17.86■□□□□ 0.45
SDC3O75056 TM7SF3-201ENST00000343028 2709 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 17.3 ms