Protein–RNA interactions for Protein: O00479

HMGN4, High mobility group nucleosome-binding domain-containing protein 4, humanhuman

Predictions only

Length 90 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN4O00479 PSRC1-206ENST00000409267 1730 ntAPPRIS P3 TSL 5 BASIC17.06■□□□□ 0.32
HMGN4O00479 ASB13-201ENST00000357700 2699 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
HMGN4O00479 TMC5-203ENST00000396229 4917 ntAPPRIS ALT2 TSL 5 BASIC17.06■□□□□ 0.32
HMGN4O00479 GTF2IP4-202ENST00000544802 3609 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
HMGN4O00479 CYP2D8P-201ENST00000433633 1490 ntBASIC17.05■□□□□ 0.32
HMGN4O00479 TMEM132A-201ENST00000005286 3480 ntAPPRIS P3 TSL 5 BASIC17.05■□□□□ 0.32
HMGN4O00479 KRT8P9-201ENST00000558927 1449 ntBASIC17.05■□□□□ 0.32
HMGN4O00479 FBXW9-203ENST00000587955 1437 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
HMGN4O00479 TRPM4-213ENST00000599628 1829 ntTSL 2 BASIC17.05■□□□□ 0.32
HMGN4O00479 GPSM2-201ENST00000264126 3032 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
HMGN4O00479 BCL7A-203ENST00000538010 6247 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
HMGN4O00479 FRS3-201ENST00000259748 2094 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
HMGN4O00479 EIF4ENIF1-202ENST00000344710 3115 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
HMGN4O00479 RHOB-201ENST00000272233 2372 ntAPPRIS P1 BASIC17.05■□□□□ 0.32
HMGN4O00479 ACOXL-205ENST00000439055 2373 ntTSL 2 BASIC17.05■□□□□ 0.32
HMGN4O00479 HAUS1-201ENST00000282058 1125 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
HMGN4O00479 HCRT-201ENST00000293330 577 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
HMGN4O00479 HIST1H2AM-201ENST00000359611 393 ntAPPRIS P1 BASIC17.05■□□□□ 0.32
HMGN4O00479 TSTD1-202ENST00000368023 574 ntAPPRIS ALT2 TSL 2 BASIC17.05■□□□□ 0.32
HMGN4O00479 FAM182B-202ENST00000376404 456 ntAPPRIS ALT2 BASIC17.05■□□□□ 0.32
HMGN4O00479 ERICH4-201ENST00000378187 946 ntAPPRIS P1 TSL 5 BASIC17.05■□□□□ 0.32
HMGN4O00479 AC136628.4-201ENST00000520758 535 ntTSL 2 BASIC17.05■□□□□ 0.32
HMGN4O00479 RAB2A-211ENST00000531289 1058 ntTSL 2 BASIC17.05■□□□□ 0.32
HMGN4O00479 KDM1A-202ENST00000400181 3059 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
HMGN4O00479 TMEM59L-201ENST00000262817 1613 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
HMGN4O00479 LINC01126-201ENST00000623515 1646 ntBASIC17.05■□□□□ 0.32
HMGN4O00479 THUMPD2-204ENST00000505747 1970 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
HMGN4O00479 SLC12A4-201ENST00000316341 4765 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
HMGN4O00479 SDC2-202ENST00000518385 1583 ntTSL 5 BASIC17.05■□□□□ 0.32
HMGN4O00479 GNE-201ENST00000377902 2565 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
HMGN4O00479 RIC8A-208ENST00000527696 2565 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
HMGN4O00479 GATA2-203ENST00000487848 1878 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
HMGN4O00479 ZNF446-207ENST00000610298 1869 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
HMGN4O00479 AGER-205ENST00000375069 1538 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
HMGN4O00479 BDKRB1-202ENST00000553356 1526 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
HMGN4O00479 ZNF500-202ENST00000545009 2440 ntTSL 2 BASIC17.05■□□□□ 0.32
HMGN4O00479 PPT2-247ENST00000375143 1754 ntAPPRIS ALT2 TSL 5 BASIC17.05■□□□□ 0.32
HMGN4O00479 DUS1L-201ENST00000306796 2068 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
HMGN4O00479 SDHA-204ENST00000504309 2067 ntTSL 5 BASIC17.05■□□□□ 0.32
HMGN4O00479 ANKRD6-204ENST00000447838 2968 ntAPPRIS P3 TSL 1 (best) BASIC17.04■□□□□ 0.32
HMGN4O00479 MLF2-202ENST00000435120 1379 ntAPPRIS P1 TSL 2 BASIC17.04■□□□□ 0.32
HMGN4O00479 SIM2-201ENST00000290399 4442 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
HMGN4O00479 NSUN5-201ENST00000252594 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
HMGN4O00479 RAB4B-EGLN2-201ENST00000594136 2554 ntAPPRIS P1 TSL 2 BASIC17.04■□□□□ 0.32
HMGN4O00479 MID1IP1-201ENST00000336949 2536 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
HMGN4O00479 JPH2-201ENST00000342272 1923 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
HMGN4O00479 SP100-208ENST00000427101 1922 ntTSL 2 BASIC17.04■□□□□ 0.32
HMGN4O00479 CCDC88C-203ENST00000389856 1641 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
HMGN4O00479 ZNF394-201ENST00000337673 2179 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
HMGN4O00479 KCTD12-201ENST00000377474 6225 ntAPPRIS P1 BASIC17.04■□□□□ 0.32
HMGN4O00479 GFY-201ENST00000576655 1876 ntAPPRIS P1 TSL 5 BASIC17.04■□□□□ 0.32
HMGN4O00479 HOTAIR-201ENST00000424518 2421 ntTSL 5 BASIC17.04■□□□□ 0.32
HMGN4O00479 SEPT2-208ENST00000407971 3267 ntTSL 5 BASIC17.04■□□□□ 0.32
HMGN4O00479 WNT1-201ENST00000293549 1185 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
HMGN4O00479 MED4-202ENST00000378586 931 ntAPPRIS ALT2 TSL 2 BASIC17.04■□□□□ 0.32
HMGN4O00479 CALML5-201ENST00000380332 859 ntAPPRIS P1 BASIC17.04■□□□□ 0.32
HMGN4O00479 DNPH1-202ENST00000393987 796 ntTSL 2 BASIC17.04■□□□□ 0.32
HMGN4O00479 KCTD7-202ENST00000443322 1160 ntAPPRIS ALT1 TSL 1 (best) BASIC17.04■□□□□ 0.32
HMGN4O00479 AC026412.1-201ENST00000507290 1033 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
HMGN4O00479 ZNF706-206ENST00000519744 785 ntTSL 3 BASIC17.04■□□□□ 0.32
HMGN4O00479 MIR3180-4-201ENST00000582223 153 ntBASIC17.04■□□□□ 0.32
HMGN4O00479 PRMT2-203ENST00000355680 2688 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
HMGN4O00479 HAUS8-202ENST00000448593 1545 ntAPPRIS ALT2 TSL 5 BASIC17.04■□□□□ 0.32
HMGN4O00479 SLC35G2-202ENST00000446465 2060 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
HMGN4O00479 TSLP-203ENST00000420978 2621 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
HMGN4O00479 HS3ST2-201ENST00000261374 2314 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
HMGN4O00479 HHATL-201ENST00000310417 1750 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
HMGN4O00479 GAB3-203ENST00000424127 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
HMGN4O00479 REEP4-201ENST00000306306 1710 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
HMGN4O00479 COLCA2-201ENST00000398035 1414 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
HMGN4O00479 MYZAP-201ENST00000267853 2361 ntAPPRIS P3 TSL 1 (best) BASIC17.03■□□□□ 0.32
HMGN4O00479 GNAS-203ENST00000306120 1878 ntBASIC17.03■□□□□ 0.32
HMGN4O00479 HNRNPUL1-203ENST00000378215 2864 ntTSL 2 BASIC17.03■□□□□ 0.32
HMGN4O00479 NLGN2-204ENST00000575301 4374 ntAPPRIS P1 TSL 5 BASIC17.03■□□□□ 0.32
HMGN4O00479 ZNF416-201ENST00000196489 2561 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
HMGN4O00479 ARMC10-209ENST00000454559 2347 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
HMGN4O00479 C1orf159-205ENST00000421241 1841 ntAPPRIS P3 TSL 2 BASIC17.03■□□□□ 0.32
HMGN4O00479 MOCS2-202ENST00000396954 1785 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
HMGN4O00479 NR2C2-206ENST00000425241 2494 ntAPPRIS P1 TSL 2 BASIC17.03■□□□□ 0.32
HMGN4O00479 MRAS-204ENST00000464896 1534 ntTSL 2 BASIC17.03■□□□□ 0.32
HMGN4O00479 CHTF8-203ENST00000448552 2903 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
HMGN4O00479 MPG-201ENST00000219431 1193 ntAPPRIS P4 TSL 3 BASIC17.03■□□□□ 0.32
HMGN4O00479 CKS1B-203ENST00000368439 912 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
HMGN4O00479 UQCRQ-201ENST00000378665 586 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
HMGN4O00479 AC007952.1-201ENST00000399087 553 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
HMGN4O00479 AC007952.2-202ENST00000399093 556 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
HMGN4O00479 AL445472.1-201ENST00000452532 1007 ntTSL 2 BASIC17.03■□□□□ 0.32
HMGN4O00479 IKBKB-210ENST00000518983 447 ntTSL 2 BASIC17.03■□□□□ 0.32
HMGN4O00479 ETFA-216ENST00000560726 942 ntTSL 3 BASIC17.03■□□□□ 0.32
HMGN4O00479 AC009065.1-201ENST00000564055 1225 ntBASIC17.03■□□□□ 0.32
HMGN4O00479 AC005606.2-201ENST00000564438 614 ntTSL 2 BASIC17.03■□□□□ 0.32
HMGN4O00479 PTGIR-204ENST00000596260 1009 ntTSL 2 BASIC17.03■□□□□ 0.32
HMGN4O00479 ZNF134-203ENST00000600344 483 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
HMGN4O00479 AC010947.1-201ENST00000623454 693 ntBASIC17.03■□□□□ 0.32
HMGN4O00479 AC106017.2-202ENST00000628484 536 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
HMGN4O00479 PAK4-209ENST00000599470 1715 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
HMGN4O00479 FGFR1-203ENST00000341462 6054 ntTSL 5 BASIC17.03■□□□□ 0.32
HMGN4O00479 NETO1-201ENST00000327305 3058 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
HMGN4O00479 EIF3B-201ENST00000360876 3055 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
HMGN4O00479 RGMB-AS1-201ENST00000498871 1903 ntTSL 2 BASIC17.03■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 28.8 ms