Protein–RNA interactions for Protein: O00257

CBX4, E3 SUMO-protein ligase CBX4, humanhuman

Predictions only

Length 560 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4O00257 CEP78-201ENST00000277082 2542 ntAPPRIS ALT2 TSL 2 BASIC18.71■□□□□ 0.59
CBX4O00257 IGFALS-202ENST00000415638 2136 ntTSL 2 BASIC18.71■□□□□ 0.59
CBX4O00257 TMEM177-204ENST00000424086 1738 ntAPPRIS P1 TSL 2 BASIC18.71■□□□□ 0.59
CBX4O00257 PRDM14-201ENST00000276594 2344 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.58
CBX4O00257 GSDMD-201ENST00000262580 1762 ntAPPRIS P2 TSL 1 (best) BASIC18.7■□□□□ 0.58
CBX4O00257 HCK-202ENST00000375852 2082 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
CBX4O00257 NMRK1-203ENST00000376811 2050 ntTSL 2 BASIC18.7■□□□□ 0.58
CBX4O00257 FAM53A-205ENST00000472884 2086 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CBX4O00257 IQGAP2-201ENST00000274364 5844 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CBX4O00257 QKI-203ENST00000361752 9463 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CBX4O00257 SIM2-201ENST00000290399 4442 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CBX4O00257 CD82-201ENST00000227155 2289 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CBX4O00257 PLEKHB2-204ENST00000409158 2277 ntTSL 2 BASIC18.7■□□□□ 0.58
CBX4O00257 POU4F3-201ENST00000230732 1182 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CBX4O00257 BCL2L10-201ENST00000260442 1249 ntAPPRIS P3 TSL 1 (best) BASIC18.7■□□□□ 0.58
CBX4O00257 TNNI3-201ENST00000344887 840 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CBX4O00257 NMRK1-202ENST00000376808 1121 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
CBX4O00257 AC007952.1-201ENST00000399087 553 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
CBX4O00257 AC007952.2-202ENST00000399093 556 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
CBX4O00257 ZNF394-203ENST00000426306 2017 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
CBX4O00257 NDOR1-203ENST00000427047 2315 ntTSL 2 BASIC18.7■□□□□ 0.58
CBX4O00257 PTX4-202ENST00000440447 1117 ntTSL 5 BASIC18.7■□□□□ 0.58
CBX4O00257 AP1S2-206ENST00000545766 576 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
CBX4O00257 AC026471.3-201ENST00000565137 578 ntTSL 2 BASIC18.7■□□□□ 0.58
CBX4O00257 AC027682.5-201ENST00000567122 530 ntTSL 3 BASIC18.7■□□□□ 0.58
CBX4O00257 NAA38-203ENST00000575071 553 ntTSL 2 BASIC18.7■□□□□ 0.58
CBX4O00257 AC106017.2-202ENST00000628484 536 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
CBX4O00257 SULF2-201ENST00000359930 4915 ntAPPRIS P4 TSL 1 (best) BASIC18.7■□□□□ 0.58
CBX4O00257 PLEKHG5-212ENST00000537245 4794 ntAPPRIS ALT2 TSL 2 BASIC18.7■□□□□ 0.58
CBX4O00257 ASCC1-205ENST00000394919 2683 ntAPPRIS P1 TSL 2 BASIC18.7■□□□□ 0.58
CBX4O00257 ATRIP-202ENST00000346691 2509 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
CBX4O00257 CERS5-203ENST00000422340 2855 ntAPPRIS ALT2 TSL 2 BASIC18.7■□□□□ 0.58
CBX4O00257 AC027097.1-202ENST00000592201 1954 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
CBX4O00257 EMX1-202ENST00000394111 1528 ntTSL 3 BASIC18.69■□□□□ 0.58
CBX4O00257 ASL-204ENST00000395331 1538 ntTSL 5 BASIC18.69■□□□□ 0.58
CBX4O00257 HAUS8-202ENST00000448593 1545 ntAPPRIS ALT2 TSL 5 BASIC18.69■□□□□ 0.58
CBX4O00257 UBE2E1-202ENST00000346855 1398 ntTSL 3 BASIC18.69■□□□□ 0.58
CBX4O00257 TLE3-214ENST00000558939 6004 ntAPPRIS P4 TSL 1 (best) BASIC18.69■□□□□ 0.58
CBX4O00257 EHMT1-204ENST00000462484 2707 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
CBX4O00257 ISOC1-201ENST00000173527 1940 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CBX4O00257 PDLIM4-201ENST00000253754 2282 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CBX4O00257 SWI5-201ENST00000320188 980 ntAPPRIS P3 TSL 1 (best) BASIC18.69■□□□□ 0.58
CBX4O00257 GSTO2-201ENST00000338595 1179 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CBX4O00257 SNCG-201ENST00000348795 684 ntTSL 2 BASIC18.69■□□□□ 0.58
CBX4O00257 AC106771.1-201ENST00000502209 372 ntTSL 2 BASIC18.69■□□□□ 0.58
CBX4O00257 AC016582.2-201ENST00000591908 446 ntTSL 3 BASIC18.69■□□□□ 0.58
CBX4O00257 CLEC4GP1-201ENST00000596555 870 ntBASIC18.69■□□□□ 0.58
CBX4O00257 AC024563.2-201ENST00000603282 481 ntBASIC18.69■□□□□ 0.58
CBX4O00257 TXNDC12-205ENST00000610127 806 ntTSL 2 BASIC18.69■□□□□ 0.58
CBX4O00257 SETD3-209ENST00000630307 1281 ntTSL 5 BASIC18.69■□□□□ 0.58
CBX4O00257 WWOX-214ENST00000566780 2482 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CBX4O00257 CDC25B-202ENST00000340833 1978 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
CBX4O00257 YAP1-201ENST00000282441 5386 ntAPPRIS P3 TSL 1 (best) BASIC18.69■□□□□ 0.58
CBX4O00257 AC093627.4-201ENST00000484550 5008 ntTSL 2 BASIC18.69■□□□□ 0.58
CBX4O00257 TRIM36-202ENST00000379617 1322 ntTSL 2 BASIC18.69■□□□□ 0.58
CBX4O00257 MMAB-204ENST00000537236 1342 ntTSL 3 BASIC18.69■□□□□ 0.58
CBX4O00257 ACSF3-202ENST00000378345 1541 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
CBX4O00257 FAM189B-204ENST00000368368 2609 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
CBX4O00257 PSTK-201ENST00000368887 1705 ntAPPRIS P2 TSL 1 (best) BASIC18.69■□□□□ 0.58
CBX4O00257 PLEKHG5-206ENST00000377748 5221 ntAPPRIS ALT2 TSL 2 BASIC18.68■□□□□ 0.58
CBX4O00257 XYLT2-203ENST00000507602 2107 ntTSL 2 BASIC18.68■□□□□ 0.58
CBX4O00257 C5orf30-203ENST00000515669 1573 ntAPPRIS P1 TSL 3 BASIC18.68■□□□□ 0.58
CBX4O00257 SH3BP2-202ENST00000435136 2318 ntAPPRIS P3 TSL 2 BASIC18.68■□□□□ 0.58
CBX4O00257 NOMO3-202ENST00000399336 4356 ntAPPRIS P2 TSL 1 (best) BASIC18.68■□□□□ 0.58
CBX4O00257 MUTYH-202ENST00000355498 1776 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
CBX4O00257 USP32-201ENST00000300896 5171 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CBX4O00257 MIB2-231ENST00000518681 3116 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
CBX4O00257 VAV1-204ENST00000596764 2775 ntTSL 2 BASIC18.68■□□□□ 0.58
CBX4O00257 PHYKPL-201ENST00000308158 2038 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CBX4O00257 RNF139-201ENST00000303545 2637 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CBX4O00257 SCT-201ENST00000176195 366 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CBX4O00257 TLCD1-201ENST00000292090 1017 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CBX4O00257 NDUFAF2-201ENST00000296597 719 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CBX4O00257 PARK7-201ENST00000338639 949 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CBX4O00257 PDLIM7-205ENST00000393551 1226 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
CBX4O00257 UBE2E1-AS1-201ENST00000426702 778 ntTSL 3 BASIC18.68■□□□□ 0.58
CBX4O00257 TRIM73-203ENST00000437796 1169 ntAPPRIS P2 TSL 1 (best) BASIC18.68■□□□□ 0.58
CBX4O00257 AP003733.1-201ENST00000491725 852 ntBASIC18.68■□□□□ 0.58
CBX4O00257 AC011498.5-201ENST00000592027 486 ntBASIC18.68■□□□□ 0.58
CBX4O00257 AC012313.10-201ENST00000623509 926 ntBASIC18.68■□□□□ 0.58
CBX4O00257 DAPK2-205ENST00000558069 1473 ntTSL 5 BASIC18.68■□□□□ 0.58
CBX4O00257 IRGC-201ENST00000244314 1662 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CBX4O00257 CARD10-202ENST00000403299 4113 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
CBX4O00257 CDKN2C-201ENST00000262662 2904 ntAPPRIS P1 TSL 2 BASIC18.68■□□□□ 0.58
CBX4O00257 SDCBP-204ENST00000447182 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CBX4O00257 VPS37D-202ENST00000451519 1303 ntTSL 5 BASIC18.68■□□□□ 0.58
CBX4O00257 USP39-201ENST00000323701 2177 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CBX4O00257 WRNIP1-202ENST00000380769 3239 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
CBX4O00257 TCERG1L-201ENST00000368642 2618 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CBX4O00257 CD55-206ENST00000391921 2433 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
CBX4O00257 CHRNB4-202ENST00000412074 1355 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
CBX4O00257 AMDHD2-203ENST00000413459 2049 ntTSL 2 BASIC18.67■□□□□ 0.58
CBX4O00257 CNOT6-202ENST00000393356 6303 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CBX4O00257 FDXR-214ENST00000581530 1827 ntAPPRIS P3 TSL 1 (best) BASIC18.67■□□□□ 0.58
CBX4O00257 MAN1B1-207ENST00000535144 2296 ntTSL 2 BASIC18.67■□□□□ 0.58
CBX4O00257 PTGER3-202ENST00000351052 1404 ntAPPRIS ALT2 TSL 5 BASIC18.67■□□□□ 0.58
CBX4O00257 POMC-204ENST00000405623 1426 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CBX4O00257 FBXO44-201ENST00000251546 1896 ntTSL 2 BASIC18.67■□□□□ 0.58
CBX4O00257 DIP2A-203ENST00000435722 2760 ntTSL 2 BASIC18.67■□□□□ 0.58
CBX4O00257 RNF144A-201ENST00000320892 5743 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 25.6 ms