Protein–RNA interactions for Protein: A6NMK7

CPSF4L, Putative cleavage and polyadenylation specificity factor subunit 4-like protein, humanhuman

Known RBP Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4LA6NMK7 PDZD3-202ENST00000355547 2252 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
CPSF4LA6NMK7 VKORC1L1-201ENST00000360768 5899 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
CPSF4LA6NMK7 POLR1D-220ENST00000637071 1943 ntTSL 5 BASIC16.94■□□□□ 0.3
CPSF4LA6NMK7 AC068446.2-201ENST00000500487 2165 ntTSL 2 BASIC16.94■□□□□ 0.3
CPSF4LA6NMK7 ATP5L-201ENST00000300688 1577 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
CPSF4LA6NMK7 APMAP-201ENST00000217456 2430 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
CPSF4LA6NMK7 FZD10-201ENST00000229030 3281 ntAPPRIS P1 BASIC16.94■□□□□ 0.3
CPSF4LA6NMK7 FZD10-202ENST00000539839 3282 ntBASIC16.94■□□□□ 0.3
CPSF4LA6NMK7 TMPRSS12-201ENST00000398458 1450 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
CPSF4LA6NMK7 SCD5-201ENST00000273908 1995 ntTSL 2 BASIC16.93■□□□□ 0.3
CPSF4LA6NMK7 SNAPC3-207ENST00000610884 2453 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
CPSF4LA6NMK7 FGD5-201ENST00000285046 5720 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
CPSF4LA6NMK7 DLC1-203ENST00000358919 4392 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
CPSF4LA6NMK7 PPAN-P2RY11-201ENST00000393796 2385 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
CPSF4LA6NMK7 TEFM-205ENST00000581216 1891 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
CPSF4LA6NMK7 ROCK2-209ENST00000616279 6401 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
CPSF4LA6NMK7 FUOM-203ENST00000368552 762 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
CPSF4LA6NMK7 TMEM240-201ENST00000378733 718 ntAPPRIS P1 TSL 2 BASIC16.93■□□□□ 0.3
CPSF4LA6NMK7 RPL29-202ENST00000466397 742 ntAPPRIS P1 TSL 2 BASIC16.93■□□□□ 0.3
CPSF4LA6NMK7 AC092718.1-201ENST00000501068 1088 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
CPSF4LA6NMK7 TFEB-206ENST00000403298 2162 ntAPPRIS P1 TSL 5 BASIC16.93■□□□□ 0.3
CPSF4LA6NMK7 ITGA7-201ENST00000257879 4120 ntAPPRIS P3 TSL 1 (best) BASIC16.93■□□□□ 0.3
CPSF4LA6NMK7 KRT8P50-201ENST00000562022 1438 ntBASIC16.93■□□□□ 0.3
CPSF4LA6NMK7 NMRK1-203ENST00000376811 2050 ntTSL 2 BASIC16.93■□□□□ 0.3
CPSF4LA6NMK7 SLC22A4-201ENST00000200652 2201 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
CPSF4LA6NMK7 ZNF133-211ENST00000538547 2245 ntTSL 2 BASIC16.93■□□□□ 0.3
CPSF4LA6NMK7 CD19-202ENST00000538922 1957 ntAPPRIS ALT2 TSL 5 BASIC16.93■□□□□ 0.3
CPSF4LA6NMK7 KLHL33-202ENST00000636854 2394 ntAPPRIS P1 TSL 5 BASIC16.93■□□□□ 0.3
CPSF4LA6NMK7 RNF170-205ENST00000526349 1338 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
CPSF4LA6NMK7 BMS1P4-202ENST00000584747 1716 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
CPSF4LA6NMK7 USP18-201ENST00000215794 2129 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
CPSF4LA6NMK7 CCDC157-203ENST00000405659 3052 ntAPPRIS P3 TSL 1 (best) BASIC16.93■□□□□ 0.3
CPSF4LA6NMK7 XKR8-201ENST00000373884 2692 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
CPSF4LA6NMK7 AP005717.1-201ENST00000500705 1899 ntTSL 5 BASIC16.93■□□□□ 0.3
CPSF4LA6NMK7 GATB-213ENST00000515812 1893 ntTSL 5 BASIC16.93■□□□□ 0.3
CPSF4LA6NMK7 SAYSD1-201ENST00000229903 2020 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
CPSF4LA6NMK7 GNE-201ENST00000377902 2565 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
CPSF4LA6NMK7 SOCS3-201ENST00000330871 2734 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
CPSF4LA6NMK7 C12orf42-205ENST00000548048 1532 ntAPPRIS ALT2 TSL 5 BASIC16.92■□□□□ 0.3
CPSF4LA6NMK7 MED9-201ENST00000268711 2228 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
CPSF4LA6NMK7 TRAF4-201ENST00000262395 2923 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
CPSF4LA6NMK7 PTDSS1-202ENST00000517309 5177 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
CPSF4LA6NMK7 C19orf54-203ENST00000470681 2521 ntTSL 2 BASIC16.92■□□□□ 0.3
CPSF4LA6NMK7 SARAF-214ENST00000545648 1976 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
CPSF4LA6NMK7 RAC1-202ENST00000356142 907 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
CPSF4LA6NMK7 DAB1-202ENST00000371230 1150 ntTSL 5 BASIC16.92■□□□□ 0.3
CPSF4LA6NMK7 RAP1B-203ENST00000378985 1017 ntTSL 2 BASIC16.92■□□□□ 0.3
CPSF4LA6NMK7 AL445645.1-201ENST00000451318 1019 ntTSL 2 BASIC16.92■□□□□ 0.3
CPSF4LA6NMK7 WDR86-AS1-203ENST00000480632 704 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
CPSF4LA6NMK7 CA15P1-201ENST00000481698 905 ntBASIC16.92■□□□□ 0.3
CPSF4LA6NMK7 IGHMBP2-205ENST00000539224 785 ntTSL 3 BASIC16.92■□□□□ 0.3
CPSF4LA6NMK7 RAP1B-221ENST00000540209 1264 ntTSL 2 BASIC16.92■□□□□ 0.3
CPSF4LA6NMK7 AL049780.2-201ENST00000556236 367 ntTSL 3 BASIC16.92■□□□□ 0.3
CPSF4LA6NMK7 AC100839.1-201ENST00000559589 577 ntTSL 4 BASIC16.92■□□□□ 0.3
CPSF4LA6NMK7 MIR4674-201ENST00000582457 87 ntBASIC16.92■□□□□ 0.3
CPSF4LA6NMK7 MIR3180-5-201ENST00000583743 153 ntBASIC16.92■□□□□ 0.3
CPSF4LA6NMK7 GRAMD4P8-201ENST00000605465 1115 ntBASIC16.92■□□□□ 0.3
CPSF4LA6NMK7 AC026471.5-201ENST00000615068 467 ntBASIC16.92■□□□□ 0.3
CPSF4LA6NMK7 F11R-202ENST00000368026 4835 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
CPSF4LA6NMK7 FBF1-205ENST00000586717 4825 ntAPPRIS ALT2 TSL 5 BASIC16.92■□□□□ 0.3
CPSF4LA6NMK7 RNF217-211ENST00000560949 5145 ntAPPRIS ALT2 TSL 5 BASIC16.92■□□□□ 0.3
CPSF4LA6NMK7 AL445686.2-201ENST00000577528 1445 ntTSL 3 BASIC16.92■□□□□ 0.3
CPSF4LA6NMK7 PRMT5-204ENST00000397441 2418 ntTSL 2 BASIC16.92■□□□□ 0.3
CPSF4LA6NMK7 PAK4-201ENST00000321944 2555 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
CPSF4LA6NMK7 AC036111.1-201ENST00000533973 1582 ntBASIC16.92■□□□□ 0.3
CPSF4LA6NMK7 PSMD8-207ENST00000592035 1581 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
CPSF4LA6NMK7 TOX2-205ENST00000423191 1709 ntTSL 2 BASIC16.92■□□□□ 0.3
CPSF4LA6NMK7 GATAD2A-202ENST00000360315 5671 ntAPPRIS P3 TSL 5 BASIC16.92■□□□□ 0.3
CPSF4LA6NMK7 GSDMD-206ENST00000526406 2496 ntAPPRIS P2 TSL 2 BASIC16.92■□□□□ 0.3
CPSF4LA6NMK7 MME-217ENST00000616757 1315 ntTSL 5 BASIC16.92■□□□□ 0.3
CPSF4LA6NMK7 ENDOV-225ENST00000522751 1475 ntTSL 5 BASIC16.92■□□□□ 0.3
CPSF4LA6NMK7 SMPD3-211ENST00000568373 2073 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
CPSF4LA6NMK7 TBXAS1-204ENST00000416849 2505 ntTSL 5 BASIC16.92■□□□□ 0.3
CPSF4LA6NMK7 RABEP1-202ENST00000537505 5365 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
CPSF4LA6NMK7 ATRIP-203ENST00000357105 2403 ntTSL 2 BASIC16.91■□□□□ 0.3
CPSF4LA6NMK7 TPD52L1-202ENST00000368388 2147 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
CPSF4LA6NMK7 ELMOD1-202ENST00000443271 1990 ntAPPRIS P1 TSL 2 BASIC16.91■□□□□ 0.3
CPSF4LA6NMK7 GPS1-201ENST00000306823 1842 ntAPPRIS P3 TSL 1 (best) BASIC16.91■□□□□ 0.3
CPSF4LA6NMK7 AC138028.4-201ENST00000564984 1845 ntBASIC16.91■□□□□ 0.3
CPSF4LA6NMK7 EGFL7-204ENST00000406555 1529 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
CPSF4LA6NMK7 SERPINH1-212ENST00000530284 1358 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
CPSF4LA6NMK7 SLC25A3-211ENST00000548847 1369 ntTSL 5 BASIC16.91■□□□□ 0.3
CPSF4LA6NMK7 TJP1-212ENST00000614355 6977 ntAPPRIS ALT2 TSL 5 BASIC16.91■□□□□ 0.3
CPSF4LA6NMK7 NKD2-202ENST00000296849 2155 ntAPPRIS P3 TSL 1 (best) BASIC16.91■□□□□ 0.3
CPSF4LA6NMK7 SLC26A11-212ENST00000572725 1862 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
CPSF4LA6NMK7 KCNC4-204ENST00000438661 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
CPSF4LA6NMK7 DGKI-203ENST00000446122 4070 ntAPPRIS ALT2 TSL 5 BASIC16.91■□□□□ 0.3
CPSF4LA6NMK7 DDHD1-201ENST00000323669 5503 ntTSL 2 BASIC16.91■□□□□ 0.3
CPSF4LA6NMK7 ASCL5-202ENST00000458416 1420 ntAPPRIS P1 BASIC16.91■□□□□ 0.3
CPSF4LA6NMK7 ACVR1C-203ENST00000348328 1270 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
CPSF4LA6NMK7 FAM26F-202ENST00000368605 1117 ntAPPRIS P1 TSL 5 BASIC16.91■□□□□ 0.3
CPSF4LA6NMK7 NPM3-201ENST00000370110 877 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
CPSF4LA6NMK7 UBB-203ENST00000395839 1012 ntAPPRIS P1 TSL 2 BASIC16.91■□□□□ 0.3
CPSF4LA6NMK7 MRPL36-202ENST00000505059 610 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
CPSF4LA6NMK7 TNFRSF1B-204ENST00000536782 557 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
CPSF4LA6NMK7 TNFRSF12A-206ENST00000575124 1133 ntTSL 2 BASIC16.91■□□□□ 0.3
CPSF4LA6NMK7 AP005263.1-201ENST00000579126 914 ntTSL 2 BASIC16.91■□□□□ 0.3
CPSF4LA6NMK7 AL158151.3-201ENST00000599172 696 ntTSL 5 BASIC16.91■□□□□ 0.3
CPSF4LA6NMK7 AC215522.2-202ENST00000633163 1143 ntTSL 5 BASIC16.91■□□□□ 0.3
CPSF4LA6NMK7 ALDH3A1-206ENST00000457500 1925 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 28.5 ms