Protein–RNA interactions for Protein: Q9Y5H4

PCDHGA1, Protocadherin gamma-A1, humanhuman

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1Q9Y5H4 AL049840.3-201ENST00000602669 611 ntBASIC17.59■□□□□ 0.41
PCDHGA1Q9Y5H4 TEX264-216ENST00000614067 1174 ntAPPRIS ALT2 TSL 3 BASIC17.59■□□□□ 0.41
PCDHGA1Q9Y5H4 GRM5-202ENST00000305447 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
PCDHGA1Q9Y5H4 SLC25A22-228ENST00000628067 2692 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
PCDHGA1Q9Y5H4 CDCA4-201ENST00000336219 2513 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
PCDHGA1Q9Y5H4 MUS81-201ENST00000308110 2392 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
PCDHGA1Q9Y5H4 KMT5C-201ENST00000255613 2308 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
PCDHGA1Q9Y5H4 MSANTD1-203ENST00000507492 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
PCDHGA1Q9Y5H4 ARHGEF18-202ENST00000359920 5733 ntAPPRIS ALT2 TSL 2 BASIC17.59■□□□□ 0.41
PCDHGA1Q9Y5H4 PUF60-202ENST00000349157 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.41
PCDHGA1Q9Y5H4 LINC01586-201ENST00000506090 1840 ntTSL 2 BASIC17.58■□□□□ 0.41
PCDHGA1Q9Y5H4 HCK-206ENST00000518730 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.41
PCDHGA1Q9Y5H4 SEC22C-202ENST00000273156 1608 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
PCDHGA1Q9Y5H4 ARFIP2-203ENST00000423813 1430 ntTSL 2 BASIC17.58■□□□□ 0.41
PCDHGA1Q9Y5H4 S1PR5-201ENST00000333430 2341 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
PCDHGA1Q9Y5H4 WNT9B-201ENST00000290015 1376 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
PCDHGA1Q9Y5H4 HTD2-206ENST00000481972 1378 ntAPPRIS P1 TSL 2 BASIC17.58■□□□□ 0.4
PCDHGA1Q9Y5H4 KRTAP5-AS1-201ENST00000424148 2265 ntTSL 2 BASIC17.58■□□□□ 0.4
PCDHGA1Q9Y5H4 B3GNT3-202ENST00000595387 1349 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
PCDHGA1Q9Y5H4 FLT3LG-204ENST00000595510 1301 ntTSL 5 BASIC17.58■□□□□ 0.4
PCDHGA1Q9Y5H4 HMGA1-205ENST00000447654 2159 ntAPPRIS P4 TSL 1 (best) BASIC17.58■□□□□ 0.4
PCDHGA1Q9Y5H4 PNOC-201ENST00000301908 1200 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
PCDHGA1Q9Y5H4 ROMO1-201ENST00000336695 496 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
PCDHGA1Q9Y5H4 INPP5F-203ENST00000369081 874 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
PCDHGA1Q9Y5H4 OTOS-202ENST00000391989 645 ntAPPRIS P1 TSL 3 BASIC17.58■□□□□ 0.4
PCDHGA1Q9Y5H4 SMIM4-202ENST00000476842 522 ntTSL 4 BASIC17.58■□□□□ 0.4
PCDHGA1Q9Y5H4 AC145285.3-201ENST00000564603 959 ntBASIC17.58■□□□□ 0.4
PCDHGA1Q9Y5H4 MED16-213ENST00000616387 1078 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
PCDHGA1Q9Y5H4 CLEC11A-203ENST00000617718 1128 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
PCDHGA1Q9Y5H4 AC116407.3-201ENST00000623905 1129 ntBASIC17.58■□□□□ 0.4
PCDHGA1Q9Y5H4 NFKBIZ-201ENST00000326151 2058 ntTSL 2 BASIC17.58■□□□□ 0.4
PCDHGA1Q9Y5H4 DBNL-217ENST00000468694 2068 ntAPPRIS ALT2 TSL 2 BASIC17.58■□□□□ 0.4
PCDHGA1Q9Y5H4 ANXA8-202ENST00000583448 1971 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
PCDHGA1Q9Y5H4 PRRT1-201ENST00000211413 1909 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
PCDHGA1Q9Y5H4 INTS11-250ENST00000620829 1862 ntTSL 2 BASIC17.58■□□□□ 0.4
PCDHGA1Q9Y5H4 RAB5A-201ENST00000273047 2536 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
PCDHGA1Q9Y5H4 MAP7D2-203ENST00000443379 2476 ntAPPRIS ALT2 TSL 2 BASIC17.58■□□□□ 0.4
PCDHGA1Q9Y5H4 FA2H-201ENST00000219368 2424 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
PCDHGA1Q9Y5H4 SYT17-207ENST00000568115 1721 ntTSL 5 BASIC17.58■□□□□ 0.4
PCDHGA1Q9Y5H4 FAM189B-201ENST00000350210 2379 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
PCDHGA1Q9Y5H4 ZNF276-208ENST00000568064 2203 ntTSL 5 BASIC17.57■□□□□ 0.4
PCDHGA1Q9Y5H4 ARPC1B-201ENST00000252725 1551 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
PCDHGA1Q9Y5H4 ZNF385C-201ENST00000436535 1572 ntAPPRIS P1 TSL 5 BASIC17.57■□□□□ 0.4
PCDHGA1Q9Y5H4 PQLC2-201ENST00000375153 2153 ntAPPRIS P1 TSL 2 BASIC17.57■□□□□ 0.4
PCDHGA1Q9Y5H4 DNAJC28-203ENST00000402202 1480 ntAPPRIS P1 TSL 5 BASIC17.57■□□□□ 0.4
PCDHGA1Q9Y5H4 GABRD-201ENST00000378585 1961 ntAPPRIS P2 TSL 1 (best) BASIC17.57■□□□□ 0.4
PCDHGA1Q9Y5H4 SLC39A5-209ENST00000454355 1968 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
PCDHGA1Q9Y5H4 FOXP3-201ENST00000376197 1326 ntTSL 2 BASIC17.57■□□□□ 0.4
PCDHGA1Q9Y5H4 IL17RC-203ENST00000403601 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
PCDHGA1Q9Y5H4 WDR88-202ENST00000361680 1835 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
PCDHGA1Q9Y5H4 DSCC1-201ENST00000313655 2314 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
PCDHGA1Q9Y5H4 LAMTOR5-201ENST00000256644 868 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
PCDHGA1Q9Y5H4 KRTAP1-1-201ENST00000306271 903 ntAPPRIS P1 BASIC17.57■□□□□ 0.4
PCDHGA1Q9Y5H4 SUSD4-203ENST00000344029 1056 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
PCDHGA1Q9Y5H4 HFE-210ENST00000470149 1123 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
PCDHGA1Q9Y5H4 LAMTOR5-204ENST00000483260 694 ntTSL 2 BASIC17.57■□□□□ 0.4
PCDHGA1Q9Y5H4 LINC02199-203ENST00000510229 496 ntTSL 3 BASIC17.57■□□□□ 0.4
PCDHGA1Q9Y5H4 ANKRD34C-AS1-205ENST00000560452 576 ntTSL 4 BASIC17.57■□□□□ 0.4
PCDHGA1Q9Y5H4 BEAN1-203ENST00000561796 1078 ntAPPRIS P2 TSL 1 (best) BASIC17.57■□□□□ 0.4
PCDHGA1Q9Y5H4 NUBP2-214ENST00000568706 913 ntTSL 2 BASIC17.57■□□□□ 0.4
PCDHGA1Q9Y5H4 BORCS8-206ENST00000585679 801 ntTSL 3 BASIC17.57■□□□□ 0.4
PCDHGA1Q9Y5H4 LAMTOR5-206ENST00000602318 634 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
PCDHGA1Q9Y5H4 PSMA6-216ENST00000627895 484 ntTSL 5 BASIC17.57■□□□□ 0.4
PCDHGA1Q9Y5H4 SLC39A4-201ENST00000276833 2297 ntTSL 2 BASIC17.57■□□□□ 0.4
PCDHGA1Q9Y5H4 SPG7-202ENST00000341316 2288 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
PCDHGA1Q9Y5H4 TPBGL-201ENST00000562197 2793 ntAPPRIS P1 BASIC17.57■□□□□ 0.4
PCDHGA1Q9Y5H4 AC233280.1-201ENST00000423600 1684 ntTSL 2 BASIC17.57■□□□□ 0.4
PCDHGA1Q9Y5H4 ILF3-217ENST00000589998 2622 ntTSL 2 BASIC17.57■□□□□ 0.4
PCDHGA1Q9Y5H4 KCTD1-202ENST00000408011 2103 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
PCDHGA1Q9Y5H4 LHX6-201ENST00000340587 3457 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
PCDHGA1Q9Y5H4 UBE2N-201ENST00000318066 5186 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
PCDHGA1Q9Y5H4 GNA14-201ENST00000341700 2482 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
PCDHGA1Q9Y5H4 TCIRG1-213ENST00000532635 2457 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
PCDHGA1Q9Y5H4 QKI-205ENST00000392127 7911 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
PCDHGA1Q9Y5H4 SLC25A3-201ENST00000188376 1909 ntAPPRIS ALT1 TSL 1 (best) BASIC17.57■□□□□ 0.4
PCDHGA1Q9Y5H4 ARHGAP8-201ENST00000336963 1487 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
PCDHGA1Q9Y5H4 ENDOV-225ENST00000522751 1475 ntTSL 5 BASIC17.56■□□□□ 0.4
PCDHGA1Q9Y5H4 TEX264-215ENST00000611400 1488 ntAPPRIS P3 TSL 5 BASIC17.56■□□□□ 0.4
PCDHGA1Q9Y5H4 CADPS2-208ENST00000615869 6066 ntAPPRIS ALT1 TSL 5 BASIC17.56■□□□□ 0.4
PCDHGA1Q9Y5H4 FAM237A-203ENST00000543490 1376 ntAPPRIS P1 TSL 5 BASIC17.56■□□□□ 0.4
PCDHGA1Q9Y5H4 AC016065.1-201ENST00000500118 2413 ntTSL 2 BASIC17.56■□□□□ 0.4
PCDHGA1Q9Y5H4 IRGC-201ENST00000244314 1662 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
PCDHGA1Q9Y5H4 MRFAP1-201ENST00000320912 2049 ntAPPRIS P1 TSL 2 BASIC17.56■□□□□ 0.4
PCDHGA1Q9Y5H4 PCBP4-212ENST00000484633 2009 ntTSL 5 BASIC17.56■□□□□ 0.4
PCDHGA1Q9Y5H4 MRPS34-201ENST00000177742 1040 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
PCDHGA1Q9Y5H4 MOSPD3-201ENST00000223054 1053 ntAPPRIS P1 TSL 2 BASIC17.56■□□□□ 0.4
PCDHGA1Q9Y5H4 RPS19BP1-201ENST00000334678 927 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
PCDHGA1Q9Y5H4 UPK3A-202ENST00000396082 627 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
PCDHGA1Q9Y5H4 MIR940-201ENST00000401276 94 ntBASIC17.56■□□□□ 0.4
PCDHGA1Q9Y5H4 AC005104.2-201ENST00000427818 678 ntBASIC17.56■□□□□ 0.4
PCDHGA1Q9Y5H4 FAM172A-207ENST00000509739 1031 ntTSL 2 BASIC17.56■□□□□ 0.4
PCDHGA1Q9Y5H4 AC021739.2-201ENST00000558375 964 ntTSL 5 BASIC17.56■□□□□ 0.4
PCDHGA1Q9Y5H4 UBE2Q2P1-205ENST00000559871 534 ntTSL 5 BASIC17.56■□□□□ 0.4
PCDHGA1Q9Y5H4 ANAPC11-210ENST00000574924 722 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
PCDHGA1Q9Y5H4 AC010632.1-201ENST00000590376 572 ntTSL 4 BASIC17.56■□□□□ 0.4
PCDHGA1Q9Y5H4 RAB11FIP4-201ENST00000394744 1968 ntTSL 2 BASIC17.56■□□□□ 0.4
PCDHGA1Q9Y5H4 STRN4-202ENST00000391910 3628 ntAPPRIS ALT1 TSL 5 BASIC17.56■□□□□ 0.4
PCDHGA1Q9Y5H4 GMPR-201ENST00000259727 1515 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
PCDHGA1Q9Y5H4 EPS8L1-201ENST00000201647 2536 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
PCDHGA1Q9Y5H4 AL357033.4-201ENST00000617703 1807 ntBASIC17.56■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 50.3 ms