Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 MRPS2-201ENST00000241600 1510 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
CHMP1AQ9HD42 ST6GALNAC6-201ENST00000291839 2280 ntAPPRIS P3 TSL 1 (best) BASIC15.81■□□□□ 0.12
CHMP1AQ9HD42 CYP7B1-201ENST00000310193 2202 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
CHMP1AQ9HD42 HCLS1-201ENST00000314583 2000 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
CHMP1AQ9HD42 AHRR-201ENST00000316418 5661 ntAPPRIS P3 TSL 1 (best) BASIC15.81■□□□□ 0.12
CHMP1AQ9HD42 RTN4-204ENST00000357732 2390 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
CHMP1AQ9HD42 CD40-201ENST00000372276 1623 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
CHMP1AQ9HD42 ADRA1A-205ENST00000380582 2089 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
CHMP1AQ9HD42 MTERF2-202ENST00000392830 1763 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
CHMP1AQ9HD42 PPAN-P2RY11-201ENST00000393796 2385 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
CHMP1AQ9HD42 FST-202ENST00000396947 2538 ntTSL 5 BASIC15.81■□□□□ 0.12
CHMP1AQ9HD42 PDE9A-209ENST00000398227 1606 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
CHMP1AQ9HD42 CCNA1-202ENST00000440264 1758 ntAPPRIS P1 TSL 2 BASIC15.81■□□□□ 0.12
CHMP1AQ9HD42 EEF1D-205ENST00000442189 2207 ntAPPRIS P4 TSL 1 (best) BASIC15.81■□□□□ 0.12
CHMP1AQ9HD42 CCDC124-201ENST00000445755 938 ntAPPRIS P1 TSL 2 BASIC15.81■□□□□ 0.12
CHMP1AQ9HD42 MIR1302-2HG-202ENST00000473358 712 ntTSL 5 BASIC15.81■□□□□ 0.12
CHMP1AQ9HD42 LCN6-203ENST00000476567 1015 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
CHMP1AQ9HD42 RTEL1-TNFRSF6B-202ENST00000482936 4931 ntAPPRIS P5 TSL 2 BASIC15.81■□□□□ 0.12
CHMP1AQ9HD42 BAALC-AS1-206ENST00000521383 736 ntTSL 3 BASIC15.81■□□□□ 0.12
CHMP1AQ9HD42 LINC02361-201ENST00000538731 1484 ntTSL 2 BASIC15.81■□□□□ 0.12
CHMP1AQ9HD42 OPA3-203ENST00000544371 1146 ntTSL 2 BASIC15.81■□□□□ 0.12
CHMP1AQ9HD42 MIR381HG-201ENST00000553692 425 ntTSL 3 BASIC15.81■□□□□ 0.12
CHMP1AQ9HD42 AC140725.1-202ENST00000561145 712 ntTSL 5 BASIC15.81■□□□□ 0.12
CHMP1AQ9HD42 CCDC124-203ENST00000597436 1055 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
CHMP1AQ9HD42 C20orf204-205ENST00000636176 961 ntAPPRIS P5 TSL 5 BASIC15.81■□□□□ 0.12
CHMP1AQ9HD42 PRRT2-212ENST00000636619 2065 ntTSL 5 BASIC15.81■□□□□ 0.12
CHMP1AQ9HD42 AC118553.2-202ENST00000638792 2729 ntAPPRIS ALT2 TSL 5 BASIC15.81■□□□□ 0.12
CHMP1AQ9HD42 AL023875.1-201ENST00000640777 796 ntBASIC15.81■□□□□ 0.12
CHMP1AQ9HD42 KLHL42-201ENST00000381271 6703 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
CHMP1AQ9HD42 TNKS1BP1-207ENST00000532437 5952 ntAPPRIS P2 TSL 1 (best) BASIC15.81■□□□□ 0.12
CHMP1AQ9HD42 MIB2-201ENST00000355826 3290 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
CHMP1AQ9HD42 COL5A1-208ENST00000618395 8437 ntAPPRIS ALT2 TSL 5 BASIC15.81■□□□□ 0.12
CHMP1AQ9HD42 FARP2-202ENST00000373287 2580 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
CHMP1AQ9HD42 WIPF1-206ENST00000409891 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
CHMP1AQ9HD42 CCDC137-201ENST00000329214 2468 ntAPPRIS P2 TSL 1 (best) BASIC15.8■□□□□ 0.12
CHMP1AQ9HD42 CAPN5-205ENST00000529629 2333 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
CHMP1AQ9HD42 STIM2-212ENST00000639640 2241 ntAPPRIS P3 TSL 1 (best) BASIC15.8■□□□□ 0.12
CHMP1AQ9HD42 SDCBP-202ENST00000413219 2086 ntAPPRIS P3 TSL 2 BASIC15.8■□□□□ 0.12
CHMP1AQ9HD42 COPS7A-210ENST00000539735 1832 ntAPPRIS P1 TSL 5 BASIC15.8■□□□□ 0.12
CHMP1AQ9HD42 FDXR-214ENST00000581530 1827 ntAPPRIS P3 TSL 1 (best) BASIC15.8■□□□□ 0.12
CHMP1AQ9HD42 PPP2R2C-206ENST00000507294 1667 ntTSL 2 BASIC15.8■□□□□ 0.12
CHMP1AQ9HD42 HEIH-201ENST00000623091 1652 ntBASIC15.8■□□□□ 0.12
CHMP1AQ9HD42 PTN-201ENST00000348225 1614 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
CHMP1AQ9HD42 RHBDL1-201ENST00000219551 1560 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
CHMP1AQ9HD42 KRT8P41-201ENST00000533985 1514 ntBASIC15.8■□□□□ 0.12
CHMP1AQ9HD42 ITPR3-201ENST00000374316 9870 ntAPPRIS P1 TSL 5 BASIC15.8■□□□□ 0.12
CHMP1AQ9HD42 DDX31-206ENST00000480876 1333 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
CHMP1AQ9HD42 RWDD4-202ENST00000327570 2590 ntAPPRIS ALT1 TSL 3 BASIC15.8■□□□□ 0.12
CHMP1AQ9HD42 ABHD14A-201ENST00000273596 1062 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
CHMP1AQ9HD42 WDR74-202ENST00000311713 1153 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
CHMP1AQ9HD42 CMTM7-202ENST00000349718 1214 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
CHMP1AQ9HD42 AC110769.1-201ENST00000420161 815 ntTSL 3 BASIC15.8■□□□□ 0.12
CHMP1AQ9HD42 METTL21A-204ENST00000425132 869 ntTSL 2 BASIC15.8■□□□□ 0.12
CHMP1AQ9HD42 APTR-205ENST00000447009 902 ntTSL 2 BASIC15.8■□□□□ 0.12
CHMP1AQ9HD42 NREP-209ENST00000455559 698 ntAPPRIS P1 TSL 4 BASIC15.8■□□□□ 0.12
CHMP1AQ9HD42 AC090192.1-201ENST00000517740 490 ntBASIC15.8■□□□□ 0.12
CHMP1AQ9HD42 LINC01578-208ENST00000557147 490 ntTSL 3 BASIC15.8■□□□□ 0.12
CHMP1AQ9HD42 AC008403.3-201ENST00000598924 454 ntBASIC15.8■□□□□ 0.12
CHMP1AQ9HD42 MTDHP1-201ENST00000605323 784 ntBASIC15.8■□□□□ 0.12
CHMP1AQ9HD42 KCNQ2-218ENST00000629676 2399 ntTSL 5 BASIC15.8■□□□□ 0.12
CHMP1AQ9HD42 SMPD1-203ENST00000527275 2188 ntAPPRIS P3 TSL 2 BASIC15.8■□□□□ 0.12
CHMP1AQ9HD42 ZNF496-201ENST00000294753 5336 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
CHMP1AQ9HD42 SLC39A5-201ENST00000266980 2031 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
CHMP1AQ9HD42 EML3-212ENST00000494176 2901 ntTSL 2 BASIC15.8■□□□□ 0.12
CHMP1AQ9HD42 EML3-216ENST00000529309 2909 ntTSL 2 BASIC15.8■□□□□ 0.12
CHMP1AQ9HD42 CYTH2-204ENST00000452733 4780 ntAPPRIS P2 TSL 1 (best) BASIC15.8■□□□□ 0.12
CHMP1AQ9HD42 ISG20-201ENST00000306072 1856 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
CHMP1AQ9HD42 RNF222-201ENST00000344001 2786 ntAPPRIS P1 BASIC15.8■□□□□ 0.12
CHMP1AQ9HD42 ADSL-202ENST00000342312 1808 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
CHMP1AQ9HD42 AC073592.3-201ENST00000625118 1834 ntBASIC15.8■□□□□ 0.12
CHMP1AQ9HD42 ISM2-207ENST00000493585 1739 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
CHMP1AQ9HD42 SSFA2-201ENST00000320370 4965 ntAPPRIS P3 TSL 1 (best) BASIC15.79■□□□□ 0.12
CHMP1AQ9HD42 RCC2P6-201ENST00000526625 1557 ntBASIC15.79■□□□□ 0.12
CHMP1AQ9HD42 PLK1-201ENST00000300093 2227 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
CHMP1AQ9HD42 HGFAC-201ENST00000382774 2159 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
CHMP1AQ9HD42 CAMKK2-207ENST00000404169 2116 ntAPPRIS P4 TSL 1 (best) BASIC15.79■□□□□ 0.12
CHMP1AQ9HD42 PXK-206ENST00000463280 2825 ntTSL 2 BASIC15.79■□□□□ 0.12
CHMP1AQ9HD42 SLC35B2-207ENST00000619636 2063 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
CHMP1AQ9HD42 ESPNP-201ENST00000270691 2015 ntBASIC15.79■□□□□ 0.12
CHMP1AQ9HD42 PLIN2-201ENST00000276914 1972 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
CHMP1AQ9HD42 REPS1-202ENST00000367663 2607 ntAPPRIS ALT1 TSL 5 BASIC15.79■□□□□ 0.12
CHMP1AQ9HD42 AP2M1-201ENST00000292807 1931 ntAPPRIS P4 TSL 5 BASIC15.79■□□□□ 0.12
CHMP1AQ9HD42 AHRR-209ENST00000512529 1912 ntTSL 5 BASIC15.79■□□□□ 0.12
CHMP1AQ9HD42 TSPY8-201ENST00000287721 1161 ntAPPRIS P5 TSL 1 (best) BASIC15.79■□□□□ 0.12
CHMP1AQ9HD42 TRAPPC5-201ENST00000317378 790 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
CHMP1AQ9HD42 ZDHHC12-202ENST00000372667 1187 ntTSL 5 BASIC15.79■□□□□ 0.12
CHMP1AQ9HD42 TSPY10-201ENST00000428845 1161 ntAPPRIS P5 TSL 1 (best) BASIC15.79■□□□□ 0.12
CHMP1AQ9HD42 ZNF436-AS1-202ENST00000437367 606 ntTSL 2 BASIC15.79■□□□□ 0.12
CHMP1AQ9HD42 MAGI2-AS3-209ENST00000448195 774 ntTSL 3 BASIC15.79■□□□□ 0.12
CHMP1AQ9HD42 Z98884.1-201ENST00000451646 830 ntTSL 3 BASIC15.79■□□□□ 0.12
CHMP1AQ9HD42 TSPY3-203ENST00000457222 1161 ntAPPRIS P5 TSL 1 (best) BASIC15.79■□□□□ 0.12
CHMP1AQ9HD42 AC022211.2-202ENST00000582668 546 ntTSL 4 BASIC15.79■□□□□ 0.12
CHMP1AQ9HD42 UBAP1-203ENST00000379186 2524 ntTSL 5 BASIC15.79■□□□□ 0.12
CHMP1AQ9HD42 PGRMC2-207ENST00000520121 3785 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
CHMP1AQ9HD42 SKOR1-202ENST00000380035 3675 ntAPPRIS ALT2 TSL 5 BASIC15.79■□□□□ 0.12
CHMP1AQ9HD42 LIFR-202ENST00000453190 4253 ntAPPRIS P1 TSL 2 BASIC15.79■□□□□ 0.12
CHMP1AQ9HD42 SHTN1-202ENST00000355371 5361 ntAPPRIS ALT1 TSL 2 BASIC15.79■□□□□ 0.12
CHMP1AQ9HD42 FARSA-202ENST00000423140 1720 ntTSL 2 BASIC15.79■□□□□ 0.12
CHMP1AQ9HD42 C7orf49-202ENST00000424142 1738 ntTSL 2 BASIC15.79■□□□□ 0.12
CHMP1AQ9HD42 MFSD11-220ENST00000621483 2850 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 31.4 ms