Protein–RNA interactions for Protein: Q9H239

MMP28, Matrix metalloproteinase-28, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28Q9H239 ZNF619-205ENST00000456778 2192 ntTSL 2 BASIC16.2■□□□□ 0.18
MMP28Q9H239 DND1-201ENST00000542735 1605 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
MMP28Q9H239 ALOX12-201ENST00000251535 2358 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
MMP28Q9H239 MSI2-203ENST00000416426 1714 ntTSL 2 BASIC16.2■□□□□ 0.18
MMP28Q9H239 ABHD14A-ACY1-202ENST00000463937 1705 ntAPPRIS ALT2 TSL 5 BASIC16.2■□□□□ 0.18
MMP28Q9H239 KLC1-212ENST00000553286 3135 ntTSL 5 BASIC16.2■□□□□ 0.18
MMP28Q9H239 LINC00921-202ENST00000573951 2468 ntTSL 2 BASIC16.2■□□□□ 0.18
MMP28Q9H239 BCAM-206ENST00000589651 2686 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
MMP28Q9H239 AANAT-201ENST00000250615 1913 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
MMP28Q9H239 SRRM2-201ENST00000301740 9353 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
MMP28Q9H239 SPDYE2-201ENST00000341656 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
MMP28Q9H239 AL807752.2-201ENST00000435463 301 ntTSL 3 BASIC16.2■□□□□ 0.18
MMP28Q9H239 SPDYE2B-202ENST00000455020 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
MMP28Q9H239 AC004889.1-203ENST00000464929 819 ntTSL 5 BASIC16.2■□□□□ 0.18
MMP28Q9H239 OR2A1-AS1-207ENST00000486094 819 ntBASIC16.2■□□□□ 0.18
MMP28Q9H239 AC093827.2-201ENST00000512654 315 ntBASIC16.2■□□□□ 0.18
MMP28Q9H239 CFL1-211ENST00000531407 1062 ntTSL 2 BASIC16.2■□□□□ 0.18
MMP28Q9H239 EPN2-203ENST00000395618 2216 ntTSL 2 BASIC16.2■□□□□ 0.18
MMP28Q9H239 BCS1L-201ENST00000359273 1454 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
MMP28Q9H239 TRIM11-202ENST00000366699 2511 ntTSL 2 BASIC16.2■□□□□ 0.18
MMP28Q9H239 HLA-G-205ENST00000428701 1578 ntAPPRIS P2 BASIC16.2■□□□□ 0.18
MMP28Q9H239 KCNIP4-205ENST00000382152 1767 ntTSL 5 BASIC16.2■□□□□ 0.18
MMP28Q9H239 FO681492.1-201ENST00000623662 5321 ntAPPRIS P5 TSL 2 BASIC16.2■□□□□ 0.18
MMP28Q9H239 PHF12-205ENST00000577226 7679 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
MMP28Q9H239 AC132872.2-201ENST00000581303 2368 ntTSL 5 BASIC16.2■□□□□ 0.18
MMP28Q9H239 FGD5-201ENST00000285046 5720 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
MMP28Q9H239 SLC1A7-201ENST00000371491 1306 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
MMP28Q9H239 PRAF2-202ENST00000553851 1334 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
MMP28Q9H239 BCAT2-208ENST00000598162 1329 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
MMP28Q9H239 AC083805.3-201ENST00000619560 1315 ntTSL 3 BASIC16.19■□□□□ 0.18
MMP28Q9H239 HEXIM2-201ENST00000307275 1528 ntAPPRIS P1 TSL 2 BASIC16.19■□□□□ 0.18
MMP28Q9H239 KDELR3-201ENST00000216014 1728 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
MMP28Q9H239 GDF5OS-201ENST00000374375 1734 ntAPPRIS P1 TSL 2 BASIC16.19■□□□□ 0.18
MMP28Q9H239 MTSS1-203ENST00000431961 1711 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
MMP28Q9H239 OCSTAMP-201ENST00000279028 2043 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
MMP28Q9H239 WDR13-201ENST00000218056 2124 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
MMP28Q9H239 CFLAR-208ENST00000423241 2128 ntAPPRIS P3 TSL 1 (best) BASIC16.19■□□□□ 0.18
MMP28Q9H239 CNST-202ENST00000366512 2422 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
MMP28Q9H239 CCT6A-201ENST00000275603 2719 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
MMP28Q9H239 AFG3L2-201ENST00000269143 3247 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
MMP28Q9H239 RASIP1-201ENST00000222145 3308 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
MMP28Q9H239 HR-201ENST00000312841 5351 ntTSL 5 BASIC16.19■□□□□ 0.18
MMP28Q9H239 TMEM130-202ENST00000345589 2261 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
MMP28Q9H239 PRDM5-212ENST00000515109 2259 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
MMP28Q9H239 HCK-202ENST00000375852 2082 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
MMP28Q9H239 KREMEN2-206ENST00000575885 1798 ntTSL 2 BASIC16.19■□□□□ 0.18
MMP28Q9H239 C21orf91-203ENST00000400559 1593 ntAPPRIS ALT1 TSL 5 BASIC16.19■□□□□ 0.18
MMP28Q9H239 HDAC11-221ENST00000522202 1559 ntAPPRIS ALT2 TSL 2 BASIC16.19■□□□□ 0.18
MMP28Q9H239 SNX7-205ENST00000529992 1589 ntTSL 2 BASIC16.19■□□□□ 0.18
MMP28Q9H239 BABAM1-213ENST00000601043 1366 ntAPPRIS P3 TSL 2 BASIC16.19■□□□□ 0.18
MMP28Q9H239 MEA1-201ENST00000244711 1089 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
MMP28Q9H239 CFC1-201ENST00000259216 1046 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
MMP28Q9H239 CFC1B-201ENST00000281882 1071 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
MMP28Q9H239 ZNF580-201ENST00000325333 1261 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
MMP28Q9H239 AC007285.1-201ENST00000422239 893 ntTSL 5 BASIC16.19■□□□□ 0.18
MMP28Q9H239 AC008667.2-201ENST00000504413 469 ntTSL 3 BASIC16.19■□□□□ 0.18
MMP28Q9H239 TMEM191C-212ENST00000536718 480 ntAPPRIS ALT2 TSL 5 BASIC16.19■□□□□ 0.18
MMP28Q9H239 ZNF580-203ENST00000545125 1025 ntAPPRIS P1 TSL 3 BASIC16.19■□□□□ 0.18
MMP28Q9H239 AC010646.1-201ENST00000594059 515 ntAPPRIS P1 TSL 4 BASIC16.19■□□□□ 0.18
MMP28Q9H239 PTGIR-202ENST00000594275 699 ntTSL 3 BASIC16.19■□□□□ 0.18
MMP28Q9H239 PTGIR-206ENST00000598865 724 ntTSL 3 BASIC16.19■□□□□ 0.18
MMP28Q9H239 AC006557.6-201ENST00000623071 864 ntBASIC16.19■□□□□ 0.18
MMP28Q9H239 ARHGAP4-204ENST00000393721 2721 ntTSL 5 BASIC16.19■□□□□ 0.18
MMP28Q9H239 HS6ST2-204ENST00000521489 2607 ntTSL 5 BASIC16.19■□□□□ 0.18
MMP28Q9H239 INPP5J-213ENST00000620191 2306 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
MMP28Q9H239 CYP2D7-203ENST00000433992 1740 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
MMP28Q9H239 KRT16-201ENST00000301653 1644 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
MMP28Q9H239 SUPT4H1-202ENST00000577396 1643 ntTSL 2 BASIC16.19■□□□□ 0.18
MMP28Q9H239 ALKBH6-213ENST00000486389 1525 ntTSL 3 BASIC16.19■□□□□ 0.18
MMP28Q9H239 AK4-208ENST00000546702 1335 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
MMP28Q9H239 KRT79-201ENST00000330553 2068 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
MMP28Q9H239 SNAI3-AS1-205ENST00000568633 2096 ntBASIC16.18■□□□□ 0.18
MMP28Q9H239 EPOR-208ENST00000592375 2086 ntTSL 2 BASIC16.18■□□□□ 0.18
MMP28Q9H239 MPP2-206ENST00000518766 1896 ntTSL 2 BASIC16.18■□□□□ 0.18
MMP28Q9H239 MOCS2-202ENST00000396954 1785 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
MMP28Q9H239 RAI2-201ENST00000331511 2317 ntAPPRIS P1 TSL 2 BASIC16.18■□□□□ 0.18
MMP28Q9H239 RABEP1-202ENST00000537505 5365 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
MMP28Q9H239 DPF2-205ENST00000528416 2799 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
MMP28Q9H239 SDHA-213ENST00000510361 2148 ntTSL 2 BASIC16.18■□□□□ 0.18
MMP28Q9H239 TM7SF2-202ENST00000345348 1490 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
MMP28Q9H239 DIRC2-201ENST00000261038 3596 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
MMP28Q9H239 SLC52A1-201ENST00000254853 2377 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
MMP28Q9H239 IFI27L2-201ENST00000238609 511 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
MMP28Q9H239 COPS9-201ENST00000307266 759 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
MMP28Q9H239 TBC1D4-202ENST00000377636 6364 ntAPPRIS P3 TSL 2 BASIC16.18■□□□□ 0.18
MMP28Q9H239 ZPBP-203ENST00000419417 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
MMP28Q9H239 HES2-206ENST00000489730 730 ntTSL 2 BASIC16.18■□□□□ 0.18
MMP28Q9H239 KHDRBS1-204ENST00000492989 1215 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
MMP28Q9H239 SLC29A4P2-201ENST00000504749 1089 ntBASIC16.18■□□□□ 0.18
MMP28Q9H239 COX6C-208ENST00000522940 694 ntAPPRIS P1 TSL 3 BASIC16.18■□□□□ 0.18
MMP28Q9H239 FGF13-208ENST00000626909 1039 ntTSL 2 BASIC16.18■□□□□ 0.18
MMP28Q9H239 FEM1AP3-201ENST00000403722 1741 ntBASIC16.18■□□□□ 0.18
MMP28Q9H239 NFATC4-215ENST00000554661 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
MMP28Q9H239 GAREM2-202ENST00000407684 5138 ntTSL 2 BASIC16.18■□□□□ 0.18
MMP28Q9H239 FAM227A-201ENST00000355830 2417 ntAPPRIS P5 TSL 5 BASIC16.18■□□□□ 0.18
MMP28Q9H239 VASH1-201ENST00000167106 5728 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
MMP28Q9H239 ZDHHC24-203ENST00000526986 1424 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
MMP28Q9H239 WNK1-206ENST00000535572 9886 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
MMP28Q9H239 STK39-201ENST00000355999 3820 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
MMP28Q9H239 RNF31-201ENST00000324103 3627 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 29.8 ms