Protein–RNA interactions for Protein: Q9H0D2

ZNF541, Zinc finger protein 541, humanhuman

Predictions only

Length 1,346 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF541Q9H0D2 USP12-201ENST00000282344 4511 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
ZNF541Q9H0D2 SPATA5L1-201ENST00000305560 2570 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
ZNF541Q9H0D2 LINC00304-201ENST00000321214 2243 ntTSL 2 BASIC21.91■■□□□ 1.1
ZNF541Q9H0D2 AL024508.2-201ENST00000607749 1894 ntBASIC21.91■■□□□ 1.1
ZNF541Q9H0D2 PLBD1-201ENST00000240617 2426 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
ZNF541Q9H0D2 MEN1-206ENST00000377321 2614 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
ZNF541Q9H0D2 C7orf49-202ENST00000424142 1738 ntTSL 2 BASIC21.91■■□□□ 1.1
ZNF541Q9H0D2 CYP2E1-205ENST00000463117 1912 ntAPPRIS P1 TSL 5 BASIC21.91■■□□□ 1.1
ZNF541Q9H0D2 MAP7-206ENST00000611373 2317 ntAPPRIS ALT2 TSL 5 BASIC21.9■■□□□ 1.1
ZNF541Q9H0D2 AC141586.3-201ENST00000562166 1838 ntBASIC21.9■■□□□ 1.1
ZNF541Q9H0D2 RPS17-201ENST00000330244 592 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
ZNF541Q9H0D2 TNNT3-203ENST00000381557 1019 ntAPPRIS ALT2 TSL 5 BASIC21.9■■□□□ 1.1
ZNF541Q9H0D2 C6orf226-201ENST00000408925 552 ntAPPRIS P1 BASIC21.9■■□□□ 1.1
ZNF541Q9H0D2 KRT18P2-201ENST00000447938 1258 ntBASIC21.9■■□□□ 1.1
ZNF541Q9H0D2 CFL1-202ENST00000524553 860 ntTSL 2 BASIC21.9■■□□□ 1.1
ZNF541Q9H0D2 AC008687.5-201ENST00000593746 558 ntBASIC21.9■■□□□ 1.1
ZNF541Q9H0D2 AXIN2-208ENST00000611991 1019 ntTSL 5 BASIC21.9■■□□□ 1.1
ZNF541Q9H0D2 AC018529.2-201ENST00000612024 828 ntTSL 4 BASIC21.9■■□□□ 1.1
ZNF541Q9H0D2 TMED3-201ENST00000299705 1475 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
ZNF541Q9H0D2 DISP3-202ENST00000304391 1495 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
ZNF541Q9H0D2 APOA4-201ENST00000357780 1473 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
ZNF541Q9H0D2 OGFOD2-224ENST00000545612 1465 ntTSL 2 BASIC21.9■■□□□ 1.1
ZNF541Q9H0D2 GPX3-209ENST00000614343 1478 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
ZNF541Q9H0D2 CHD1L-201ENST00000361293 2484 ntTSL 2 BASIC21.9■■□□□ 1.1
ZNF541Q9H0D2 BLACE-201ENST00000378120 2456 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
ZNF541Q9H0D2 SNAI3-201ENST00000332281 1732 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
ZNF541Q9H0D2 ENTPD8-204ENST00000472938 1749 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
ZNF541Q9H0D2 MAG-202ENST00000392213 2390 ntAPPRIS P4 TSL 1 (best) BASIC21.9■■□□□ 1.1
ZNF541Q9H0D2 RAP2A-201ENST00000245304 5487 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
ZNF541Q9H0D2 NSUN5P2-201ENST00000388955 1789 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
ZNF541Q9H0D2 SYNDIG1L-201ENST00000331628 2607 ntAPPRIS P1 TSL 5 BASIC21.9■■□□□ 1.1
ZNF541Q9H0D2 C5orf30-203ENST00000515669 1573 ntAPPRIS P1 TSL 3 BASIC21.9■■□□□ 1.1
ZNF541Q9H0D2 RGS11-203ENST00000359740 1371 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
ZNF541Q9H0D2 SRSF2-205ENST00000508921 1390 ntTSL 2 BASIC21.9■■□□□ 1.1
ZNF541Q9H0D2 ZNF517-202ENST00000525105 1383 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
ZNF541Q9H0D2 SUFU-201ENST00000369899 1839 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
ZNF541Q9H0D2 SPRYD7-204ENST00000613924 2285 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
ZNF541Q9H0D2 ACTRT2-201ENST00000378404 1421 ntAPPRIS P1 BASIC21.89■■□□□ 1.1
ZNF541Q9H0D2 LY6E-207ENST00000520466 1419 ntAPPRIS P2 TSL 2 BASIC21.89■■□□□ 1.1
ZNF541Q9H0D2 AC233280.1-201ENST00000423600 1684 ntTSL 2 BASIC21.89■■□□□ 1.1
ZNF541Q9H0D2 HDAC1-201ENST00000373548 2124 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.1
ZNF541Q9H0D2 AC009102.3-201ENST00000623118 1491 ntBASIC21.89■■□□□ 1.1
ZNF541Q9H0D2 TCP11-202ENST00000311875 2166 ntAPPRIS ALT2 TSL 1 (best) BASIC21.89■■□□□ 1.1
ZNF541Q9H0D2 HOXC13-201ENST00000243056 2423 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.1
ZNF541Q9H0D2 SOD2-201ENST00000337404 991 ntTSL 2 BASIC21.89■■□□□ 1.1
ZNF541Q9H0D2 CALY-203ENST00000368558 825 ntTSL 5 BASIC21.89■■□□□ 1.1
ZNF541Q9H0D2 HTR5BP-201ENST00000430851 1154 ntBASIC21.89■■□□□ 1.1
ZNF541Q9H0D2 YBX1P5-201ENST00000509441 847 ntBASIC21.89■■□□□ 1.1
ZNF541Q9H0D2 AL137786.1-202ENST00000555496 789 ntTSL 5 BASIC21.89■■□□□ 1.1
ZNF541Q9H0D2 TMUB2-213ENST00000589856 1505 ntTSL 2 BASIC21.89■■□□□ 1.09
ZNF541Q9H0D2 ESR2-204ENST00000353772 2454 ntTSL 1 (best) BASIC21.89■■□□□ 1.09
ZNF541Q9H0D2 MRGPRG-AS1-201ENST00000420873 1818 ntTSL 2 BASIC21.89■■□□□ 1.09
ZNF541Q9H0D2 NFKBIE-204ENST00000619360 2327 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
ZNF541Q9H0D2 CPT2-203ENST00000635862 2319 ntTSL 5 BASIC21.89■■□□□ 1.09
ZNF541Q9H0D2 SYNE4-201ENST00000324444 1354 ntAPPRIS P3 TSL 5 BASIC21.89■■□□□ 1.09
ZNF541Q9H0D2 FIBCD1-201ENST00000372337 1868 ntTSL 5 BASIC21.89■■□□□ 1.09
ZNF541Q9H0D2 CLK3-202ENST00000395066 2621 ntTSL 1 (best) BASIC21.89■■□□□ 1.09
ZNF541Q9H0D2 ZNF707-201ENST00000358656 2183 ntAPPRIS P1 TSL 2 BASIC21.89■■□□□ 1.09
ZNF541Q9H0D2 LINC01006-201ENST00000333319 2292 ntBASIC21.88■■□□□ 1.09
ZNF541Q9H0D2 PIF1-202ENST00000333425 2278 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
ZNF541Q9H0D2 SP7-203ENST00000537210 1472 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
ZNF541Q9H0D2 ATXN7L2-202ENST00000369870 2318 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
ZNF541Q9H0D2 EXOSC5-201ENST00000221233 1118 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
ZNF541Q9H0D2 PNRC2-202ENST00000374468 814 ntAPPRIS P1 TSL 2 BASIC21.88■■□□□ 1.09
ZNF541Q9H0D2 SNHG11-205ENST00000421599 1046 ntTSL 3 BASIC21.88■■□□□ 1.09
ZNF541Q9H0D2 MCCD1P2-201ENST00000423228 335 ntBASIC21.88■■□□□ 1.09
ZNF541Q9H0D2 CDKN2A-209ENST00000498628 926 ntTSL 2 BASIC21.88■■□□□ 1.09
ZNF541Q9H0D2 MRPL49-203ENST00000526171 501 ntTSL 2 BASIC21.88■■□□□ 1.09
ZNF541Q9H0D2 ARAP1-AS1-201ENST00000542022 388 ntTSL 5 BASIC21.88■■□□□ 1.09
ZNF541Q9H0D2 AC008403.2-204ENST00000600650 1006 ntTSL 3 BASIC21.88■■□□□ 1.09
ZNF541Q9H0D2 AC074135.2-201ENST00000600896 510 ntTSL 3 BASIC21.88■■□□□ 1.09
ZNF541Q9H0D2 ZNF385C-201ENST00000436535 1572 ntAPPRIS P1 TSL 5 BASIC21.88■■□□□ 1.09
ZNF541Q9H0D2 KLC1-219ENST00000555836 2467 ntTSL 5 BASIC21.88■■□□□ 1.09
ZNF541Q9H0D2 PRRT4-207ENST00000535159 2897 ntAPPRIS P1 TSL 5 BASIC21.88■■□□□ 1.09
ZNF541Q9H0D2 ARFRP1-210ENST00000614942 2554 ntTSL 5 BASIC21.88■■□□□ 1.09
ZNF541Q9H0D2 HFE2-204ENST00000475797 1381 ntTSL 2 BASIC21.88■■□□□ 1.09
ZNF541Q9H0D2 JKAMP-201ENST00000261247 1726 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
ZNF541Q9H0D2 GUCY1A3-210ENST00000513574 2656 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
ZNF541Q9H0D2 NPNT-214ENST00000514622 2362 ntTSL 2 BASIC21.88■■□□□ 1.09
ZNF541Q9H0D2 C16orf72-201ENST00000327827 5953 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
ZNF541Q9H0D2 BTG3-201ENST00000339775 1485 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
ZNF541Q9H0D2 ASL-204ENST00000395331 1538 ntTSL 5 BASIC21.87■■□□□ 1.09
ZNF541Q9H0D2 HAUS8-202ENST00000448593 1545 ntAPPRIS ALT2 TSL 5 BASIC21.87■■□□□ 1.09
ZNF541Q9H0D2 INTS11-250ENST00000620829 1862 ntTSL 2 BASIC21.87■■□□□ 1.09
ZNF541Q9H0D2 ABCB8-211ENST00000477092 1596 ntTSL 5 BASIC21.87■■□□□ 1.09
ZNF541Q9H0D2 CEBPA-201ENST00000498907 2631 ntAPPRIS P1 BASIC21.87■■□□□ 1.09
ZNF541Q9H0D2 TM9SF1-203ENST00000524835 1938 ntTSL 2 BASIC21.87■■□□□ 1.09
ZNF541Q9H0D2 HSPA1A-202ENST00000608703 1909 ntTSL 2 BASIC21.87■■□□□ 1.09
ZNF541Q9H0D2 POLR2M-206ENST00000494490 1648 ntTSL 5 BASIC21.87■■□□□ 1.09
ZNF541Q9H0D2 OPRK1-202ENST00000520287 1602 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
ZNF541Q9H0D2 LCE1D-201ENST00000326233 430 ntAPPRIS P1 TSL 5 BASIC21.87■■□□□ 1.09
ZNF541Q9H0D2 IQCF3-204ENST00000446775 1241 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
ZNF541Q9H0D2 BX005266.1-201ENST00000473402 457 ntBASIC21.87■■□□□ 1.09
ZNF541Q9H0D2 AL109827.1-203ENST00000541176 872 ntAPPRIS P5 TSL 2 BASIC21.87■■□□□ 1.09
ZNF541Q9H0D2 AC126696.3-201ENST00000563993 575 ntTSL 4 BASIC21.87■■□□□ 1.09
ZNF541Q9H0D2 MIR4469-201ENST00000583919 79 ntBASIC21.87■■□□□ 1.09
ZNF541Q9H0D2 OGFOD2-211ENST00000538628 1696 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
ZNF541Q9H0D2 DHRS7-212ENST00000611054 1321 ntTSL 5 BASIC21.87■■□□□ 1.09
ZNF541Q9H0D2 ZNF561-AS1-204ENST00000587536 1799 ntTSL 2 BASIC21.87■■□□□ 1.09
ZNF541Q9H0D2 HDGFL2-208ENST00000616600 2281 ntAPPRIS P3 TSL 1 (best) BASIC21.87■■□□□ 1.09
Retrieved 100 of 98,524 protein–RNA pairs in 25.9 ms