Protein–RNA interactions for Protein: Q9C037

TRIM4, E3 ubiquitin-protein ligase TRIM4, humanhuman

Predictions only

Length 500 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM4Q9C037 COPE-203ENST00000351079 907 ntTSL 2 BASIC18.31■□□□□ 0.52
TRIM4Q9C037 ZNF32-201ENST00000374433 1137 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
TRIM4Q9C037 TMEM88B-201ENST00000378821 492 ntAPPRIS P1 TSL 2 BASIC18.31■□□□□ 0.52
TRIM4Q9C037 YBEY-206ENST00000397701 744 ntAPPRIS P1 TSL 2 BASIC18.31■□□□□ 0.52
TRIM4Q9C037 HDAC11-AS1-201ENST00000424112 515 ntTSL 2 BASIC18.31■□□□□ 0.52
TRIM4Q9C037 AP002982.1-201ENST00000492365 877 ntBASIC18.31■□□□□ 0.52
TRIM4Q9C037 PP7080-204ENST00000510714 601 ntTSL 3 BASIC18.31■□□□□ 0.52
TRIM4Q9C037 FITM1-202ENST00000559294 800 ntBASIC18.31■□□□□ 0.52
TRIM4Q9C037 SPINK2-207ENST00000631082 392 ntTSL 5 BASIC18.31■□□□□ 0.52
TRIM4Q9C037 KMT2E-207ENST00000476671 2523 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
TRIM4Q9C037 NPRL3-201ENST00000399953 2784 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
TRIM4Q9C037 C2CD3-213ENST00000539061 2722 ntTSL 2 BASIC18.31■□□□□ 0.52
TRIM4Q9C037 TRMT2A-203ENST00000404751 2498 ntAPPRIS ALT2 TSL 2 BASIC18.31■□□□□ 0.52
TRIM4Q9C037 CD55-201ENST00000314754 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
TRIM4Q9C037 AC013268.5-201ENST00000454928 1959 ntTSL 2 BASIC18.31■□□□□ 0.52
TRIM4Q9C037 BICD1-207ENST00000551848 1962 ntBASIC18.31■□□□□ 0.52
TRIM4Q9C037 NBPF21P-201ENST00000425093 1451 ntBASIC18.31■□□□□ 0.52
TRIM4Q9C037 HEMK1-206ENST00000455834 1499 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.52
TRIM4Q9C037 USP49-202ENST00000373010 2446 ntTSL 5 BASIC18.31■□□□□ 0.52
TRIM4Q9C037 ZNF500-202ENST00000545009 2440 ntTSL 2 BASIC18.31■□□□□ 0.52
TRIM4Q9C037 ADAM15-207ENST00000368413 1901 ntTSL 5 BASIC18.31■□□□□ 0.52
TRIM4Q9C037 ALDH7A1-215ENST00000553117 1935 ntTSL 2 BASIC18.31■□□□□ 0.52
TRIM4Q9C037 LGI4-202ENST00000392225 2891 ntTSL 5 BASIC18.31■□□□□ 0.52
TRIM4Q9C037 TMEM198-201ENST00000344458 2393 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
TRIM4Q9C037 ITGB7-209ENST00000550743 2138 ntTSL 5 BASIC18.31■□□□□ 0.52
TRIM4Q9C037 CHRNB2-201ENST00000368476 5867 ntAPPRIS P2 TSL 1 (best) BASIC18.31■□□□□ 0.52
TRIM4Q9C037 HRAT92-201ENST00000452622 3506 ntTSL 2 BASIC18.31■□□□□ 0.52
TRIM4Q9C037 ZNF385C-205ENST00000618554 2596 ntTSL 5 BASIC18.31■□□□□ 0.52
TRIM4Q9C037 AC046158.3-201ENST00000624947 2558 ntBASIC18.31■□□□□ 0.52
TRIM4Q9C037 ETV4-204ENST00000545089 1628 ntTSL 2 BASIC18.31■□□□□ 0.52
TRIM4Q9C037 MFSD14A-201ENST00000370152 2777 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
TRIM4Q9C037 DBNL-210ENST00000448521 1808 ntAPPRIS ALT1 TSL 1 (best) BASIC18.3■□□□□ 0.52
TRIM4Q9C037 MAP3K11-210ENST00000532507 1812 ntTSL 2 BASIC18.3■□□□□ 0.52
TRIM4Q9C037 PTPRF-209ENST00000438120 6377 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
TRIM4Q9C037 FPGS-201ENST00000373225 2278 ntTSL 2 BASIC18.3■□□□□ 0.52
TRIM4Q9C037 DNM1-211ENST00000627061 2724 ntTSL 5 BASIC18.3■□□□□ 0.52
TRIM4Q9C037 SLC23A3-201ENST00000295738 2037 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
TRIM4Q9C037 TYMS-201ENST00000323224 1327 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
TRIM4Q9C037 BTBD1-201ENST00000261721 3297 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
TRIM4Q9C037 OLIG2-201ENST00000333337 3262 ntAPPRIS P1 BASIC18.3■□□□□ 0.52
TRIM4Q9C037 PNCK-201ENST00000340888 1508 ntAPPRIS P1 TSL 5 BASIC18.3■□□□□ 0.52
TRIM4Q9C037 ADGRB2-202ENST00000373658 5414 ntAPPRIS ALT2 TSL 5 BASIC18.3■□□□□ 0.52
TRIM4Q9C037 DAGLB-204ENST00000436575 2385 ntTSL 2 BASIC18.3■□□□□ 0.52
TRIM4Q9C037 FDXR-203ENST00000420580 1705 ntTSL 2 BASIC18.3■□□□□ 0.52
TRIM4Q9C037 MCIDAS-201ENST00000513312 1736 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
TRIM4Q9C037 AKR1A1-201ENST00000351829 1166 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
TRIM4Q9C037 IPPK-202ENST00000375522 882 ntTSL 3 BASIC18.3■□□□□ 0.52
TRIM4Q9C037 TAPBP-236ENST00000456592 817 ntTSL 5 BASIC18.3■□□□□ 0.52
TRIM4Q9C037 NDUFS3-213ENST00000534716 1263 ntTSL 2 BASIC18.3■□□□□ 0.52
TRIM4Q9C037 TGIF1-222ENST00000577543 729 ntTSL 3 BASIC18.3■□□□□ 0.52
TRIM4Q9C037 AP005263.1-201ENST00000579126 914 ntTSL 2 BASIC18.3■□□□□ 0.52
TRIM4Q9C037 PRR29-205ENST00000579184 1052 ntAPPRIS ALT2 TSL 2 BASIC18.3■□□□□ 0.52
TRIM4Q9C037 AC016582.3-201ENST00000589653 561 ntTSL 4 BASIC18.3■□□□□ 0.52
TRIM4Q9C037 KRT6A-201ENST00000330722 2310 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
TRIM4Q9C037 PLPPR4-202ENST00000370185 5369 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
TRIM4Q9C037 CEP83-AS1-201ENST00000623122 2482 ntBASIC18.3■□□□□ 0.52
TRIM4Q9C037 PSMD6-201ENST00000295901 1430 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
TRIM4Q9C037 EPHX4-201ENST00000370383 1437 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
TRIM4Q9C037 ELN-207ENST00000380562 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
TRIM4Q9C037 PIANP-204ENST00000540656 2432 ntAPPRIS P3 TSL 2 BASIC18.3■□□□□ 0.52
TRIM4Q9C037 P3H4-202ENST00000393928 2601 ntAPPRIS P2 TSL 1 (best) BASIC18.3■□□□□ 0.52
TRIM4Q9C037 FBXL5-202ENST00000412094 2837 ntAPPRIS ALT1 TSL 1 (best) BASIC18.3■□□□□ 0.52
TRIM4Q9C037 JRK-211ENST00000615982 2823 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
TRIM4Q9C037 REPIN1-203ENST00000444957 2969 ntAPPRIS P3 TSL 1 (best) BASIC18.3■□□□□ 0.52
TRIM4Q9C037 NBL1-210ENST00000615215 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
TRIM4Q9C037 NR1H2-201ENST00000253727 1998 ntAPPRIS P2 TSL 1 (best) BASIC18.3■□□□□ 0.52
TRIM4Q9C037 RAVER1-207ENST00000615032 1952 ntAPPRIS ALT2 TSL 5 BASIC18.3■□□□□ 0.52
TRIM4Q9C037 AC004982.2-201ENST00000609497 1578 ntTSL 2 BASIC18.3■□□□□ 0.52
TRIM4Q9C037 TRIM45-203ENST00000369464 3495 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
TRIM4Q9C037 CPZ-202ENST00000360986 2267 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
TRIM4Q9C037 ARFIP2-204ENST00000445086 1300 ntTSL 2 BASIC18.29■□□□□ 0.52
TRIM4Q9C037 SOCS7-201ENST00000612932 7857 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
TRIM4Q9C037 BTBD3-201ENST00000254977 4686 ntAPPRIS ALT1 TSL 2 BASIC18.29■□□□□ 0.52
TRIM4Q9C037 ETNK2-203ENST00000367202 2434 ntAPPRIS P3 TSL 1 (best) BASIC18.29■□□□□ 0.52
TRIM4Q9C037 RSBN1-205ENST00000615321 2418 ntTSL 2 BASIC18.29■□□□□ 0.52
TRIM4Q9C037 GOLGA6L3-201ENST00000507199 1679 ntBASIC18.29■□□□□ 0.52
TRIM4Q9C037 MED25-212ENST00000618715 1467 ntTSL 5 BASIC18.29■□□□□ 0.52
TRIM4Q9C037 GPR6-201ENST00000275169 1089 ntAPPRIS P1 BASIC18.29■□□□□ 0.52
TRIM4Q9C037 LINC01293-201ENST00000453951 1266 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
TRIM4Q9C037 LINC00894-209ENST00000458274 547 ntTSL 2 BASIC18.29■□□□□ 0.52
TRIM4Q9C037 AC022616.7-201ENST00000525383 220 ntBASIC18.29■□□□□ 0.52
TRIM4Q9C037 SIVA1-207ENST00000556195 674 ntTSL 3 BASIC18.29■□□□□ 0.52
TRIM4Q9C037 NCOA6-207ENST00000616167 3271 ntAPPRIS ALT2 TSL 5 BASIC18.29■□□□□ 0.52
TRIM4Q9C037 ASIC2-201ENST00000225823 3443 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
TRIM4Q9C037 NINL-201ENST00000278886 4969 ntAPPRIS P3 TSL 1 (best) BASIC18.29■□□□□ 0.52
TRIM4Q9C037 SLC25A15-201ENST00000338625 1586 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
TRIM4Q9C037 ZNF815P-204ENST00000434898 1737 ntBASIC18.29■□□□□ 0.52
TRIM4Q9C037 CXorf49-202ENST00000535490 1715 ntAPPRIS P1 TSL 5 BASIC18.29■□□□□ 0.52
TRIM4Q9C037 CXorf49B-202ENST00000542739 1715 ntAPPRIS P1 TSL 5 BASIC18.29■□□□□ 0.52
TRIM4Q9C037 PTGDR-201ENST00000306051 2942 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
TRIM4Q9C037 LRRC20-203ENST00000358141 2924 ntTSL 2 BASIC18.29■□□□□ 0.52
TRIM4Q9C037 STRA6-209ENST00000563965 2565 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
TRIM4Q9C037 DIP2A-205ENST00000466639 2711 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
TRIM4Q9C037 TEX21P-204ENST00000641479 1693 ntBASIC18.28■□□□□ 0.52
TRIM4Q9C037 TMEM8B-204ENST00000439587 2150 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
TRIM4Q9C037 LTF-203ENST00000426532 2494 ntTSL 2 BASIC18.28■□□□□ 0.52
TRIM4Q9C037 PDE2A-226ENST00000544570 3119 ntTSL 5 BASIC18.28■□□□□ 0.52
TRIM4Q9C037 AMDHD2-201ENST00000293971 1459 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
TRIM4Q9C037 OPRK1-205ENST00000612786 5196 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
TRIM4Q9C037 ST6GALNAC6-202ENST00000373141 2424 ntAPPRIS ALT1 TSL 2 BASIC18.28■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 16.4 ms