Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 TCTA-201ENST00000273590 2146 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
TRAIPQ9BWF2 RBFADN-201ENST00000562391 1350 ntTSL 1 (best) BASIC20.08■□□□□ 0.8
TRAIPQ9BWF2 CXXC4-201ENST00000394767 5565 ntAPPRIS P1 TSL 5 BASIC20.08■□□□□ 0.8
TRAIPQ9BWF2 ZNF213-201ENST00000396878 3313 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
TRAIPQ9BWF2 AGER-205ENST00000375069 1538 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
TRAIPQ9BWF2 EGFL7-204ENST00000406555 1529 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
TRAIPQ9BWF2 KRT18P1-202ENST00000452408 1331 ntBASIC20.07■□□□□ 0.8
TRAIPQ9BWF2 CCDC74A-206ENST00000467992 1347 ntAPPRIS ALT2 TSL 1 (best) BASIC20.07■□□□□ 0.8
TRAIPQ9BWF2 AC093627.4-201ENST00000484550 5008 ntTSL 2 BASIC20.07■□□□□ 0.8
TRAIPQ9BWF2 CLDND1-203ENST00000394181 2170 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
TRAIPQ9BWF2 BTG3-201ENST00000339775 1485 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
TRAIPQ9BWF2 ENDOV-225ENST00000522751 1475 ntTSL 5 BASIC20.07■□□□□ 0.8
TRAIPQ9BWF2 TDRKH-203ENST00000368824 2824 ntAPPRIS P2 TSL 1 (best) BASIC20.07■□□□□ 0.8
TRAIPQ9BWF2 PHLDA1-202ENST00000602540 5741 ntAPPRIS ALT2 TSL 1 (best) BASIC20.07■□□□□ 0.8
TRAIPQ9BWF2 PPIH-202ENST00000372549 327 ntTSL 3 BASIC20.07■□□□□ 0.8
TRAIPQ9BWF2 LENG8-AS1-201ENST00000416022 582 ntTSL 3 BASIC20.07■□□□□ 0.8
TRAIPQ9BWF2 CIB2-208ENST00000560618 804 ntTSL 2 BASIC20.07■□□□□ 0.8
TRAIPQ9BWF2 ANAPC11-217ENST00000579978 575 ntAPPRIS P1 TSL 2 BASIC20.07■□□□□ 0.8
TRAIPQ9BWF2 GPR32P1-201ENST00000601788 811 ntBASIC20.07■□□□□ 0.8
TRAIPQ9BWF2 AC024563.2-201ENST00000603282 481 ntBASIC20.07■□□□□ 0.8
TRAIPQ9BWF2 AP000547.2-201ENST00000609641 661 ntTSL 5 BASIC20.07■□□□□ 0.8
TRAIPQ9BWF2 AC243773.1-201ENST00000614759 544 ntTSL 5 BASIC20.07■□□□□ 0.8
TRAIPQ9BWF2 TBC1D19-201ENST00000264866 2263 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
TRAIPQ9BWF2 FAM72C-202ENST00000584486 2297 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
TRAIPQ9BWF2 SMPD3-203ENST00000563226 2093 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
TRAIPQ9BWF2 LINC01700-201ENST00000433952 1598 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
TRAIPQ9BWF2 LTBP4-201ENST00000204005 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC20.07■□□□□ 0.8
TRAIPQ9BWF2 ARHGAP23-222ENST00000622683 5964 ntAPPRIS P2 TSL 5 BASIC20.07■□□□□ 0.8
TRAIPQ9BWF2 MMP28-204ENST00000615136 2033 ntAPPRIS ALT2 TSL 1 (best) BASIC20.07■□□□□ 0.8
TRAIPQ9BWF2 UBP1-202ENST00000283629 4148 ntAPPRIS P3 TSL 1 (best) BASIC20.07■□□□□ 0.8
TRAIPQ9BWF2 ESAM-201ENST00000278927 1826 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
TRAIPQ9BWF2 EDC3-214ENST00000568176 1825 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
TRAIPQ9BWF2 NDRG2-227ENST00000554143 1980 ntAPPRIS ALT1 TSL 2 BASIC20.06■□□□□ 0.8
TRAIPQ9BWF2 SMIM24-201ENST00000215531 1329 ntAPPRIS P2 TSL 1 (best) BASIC20.06■□□□□ 0.8
TRAIPQ9BWF2 VPS37D-202ENST00000451519 1303 ntTSL 5 BASIC20.06■□□□□ 0.8
TRAIPQ9BWF2 TRIM13-206ENST00000457662 1489 ntAPPRIS P3 TSL 1 (best) BASIC20.06■□□□□ 0.8
TRAIPQ9BWF2 STXBP2-201ENST00000221283 1876 ntAPPRIS P3 TSL 1 (best) BASIC20.06■□□□□ 0.8
TRAIPQ9BWF2 CARHSP1-201ENST00000311052 746 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
TRAIPQ9BWF2 CDC26-201ENST00000374206 872 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
TRAIPQ9BWF2 CST3-202ENST00000398409 832 ntAPPRIS P1 TSL 3 BASIC20.06■□□□□ 0.8
TRAIPQ9BWF2 ABI3-202ENST00000419580 1718 ntAPPRIS P1 TSL 5 BASIC20.06■□□□□ 0.8
TRAIPQ9BWF2 RNF144A-AS1-205ENST00000439208 757 ntTSL 3 BASIC20.06■□□□□ 0.8
TRAIPQ9BWF2 PRELID1P1-202ENST00000567272 903 ntBASIC20.06■□□□□ 0.8
TRAIPQ9BWF2 TRAF7-205ENST00000567653 666 ntTSL 2 BASIC20.06■□□□□ 0.8
TRAIPQ9BWF2 MRPS7-204ENST00000579761 1717 ntTSL 2 BASIC20.06■□□□□ 0.8
TRAIPQ9BWF2 TBCB-205ENST00000585746 875 ntTSL 3 BASIC20.06■□□□□ 0.8
TRAIPQ9BWF2 MALAT1-215ENST00000619449 794 ntTSL 3 BASIC20.06■□□□□ 0.8
TRAIPQ9BWF2 ADPGK-201ENST00000311669 2557 ntAPPRIS P1 TSL 2 BASIC20.06■□□□□ 0.8
TRAIPQ9BWF2 SEPT8-216ENST00000620483 4335 ntTSL 5 BASIC20.06■□□□□ 0.8
TRAIPQ9BWF2 KRT81-201ENST00000327741 1929 ntAPPRIS P2 TSL 1 (best) BASIC20.06■□□□□ 0.8
TRAIPQ9BWF2 TEPSIN-213ENST00000637944 1782 ntAPPRIS ALT2 TSL 5 BASIC20.06■□□□□ 0.8
TRAIPQ9BWF2 TRABD-203ENST00000395827 2172 ntAPPRIS P3 TSL 5 BASIC20.05■□□□□ 0.8
TRAIPQ9BWF2 UBC-206ENST00000538617 1303 ntTSL 5 BASIC20.05■□□□□ 0.8
TRAIPQ9BWF2 SRSF1-208ENST00000584773 1317 ntTSL 5 BASIC20.05■□□□□ 0.8
TRAIPQ9BWF2 MIB2-231ENST00000518681 3116 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
TRAIPQ9BWF2 ABCC6-209ENST00000640696 1893 ntTSL 5 BASIC20.05■□□□□ 0.8
TRAIPQ9BWF2 TM9SF1-206ENST00000528669 2425 ntTSL 5 BASIC20.05■□□□□ 0.8
TRAIPQ9BWF2 SYT17-207ENST00000568115 1721 ntTSL 5 BASIC20.05■□□□□ 0.8
TRAIPQ9BWF2 CDCA7L-203ENST00000406877 3066 ntAPPRIS P3 TSL 1 (best) BASIC20.05■□□□□ 0.8
TRAIPQ9BWF2 ANKRD65-201ENST00000427211 1976 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
TRAIPQ9BWF2 NOP14-AS1-202ENST00000505731 1999 ntTSL 2 BASIC20.05■□□□□ 0.8
TRAIPQ9BWF2 JMJD7-201ENST00000397299 1416 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
TRAIPQ9BWF2 CDK10-208ENST00000505473 1424 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
TRAIPQ9BWF2 ARSI-203ENST00000515301 1429 ntTSL 4 BASIC20.05■□□□□ 0.8
TRAIPQ9BWF2 CORO6-212ENST00000584969 1416 ntAPPRIS ALT1 TSL 5 BASIC20.05■□□□□ 0.8
TRAIPQ9BWF2 MEN1-201ENST00000312049 2761 ntAPPRIS ALT1 TSL 1 (best) BASIC20.05■□□□□ 0.8
TRAIPQ9BWF2 CGB7-201ENST00000377280 918 ntAPPRIS P1 TSL 3 BASIC20.05■□□□□ 0.8
TRAIPQ9BWF2 ISG15-201ENST00000379389 711 ntAPPRIS P2 TSL 1 (best) BASIC20.05■□□□□ 0.8
TRAIPQ9BWF2 LINC01315-202ENST00000424852 1142 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
TRAIPQ9BWF2 TMEM9B-AS1-201ENST00000525484 1053 ntTSL 5 BASIC20.05■□□□□ 0.8
TRAIPQ9BWF2 RPL28-210ENST00000560583 1204 ntTSL 2 BASIC20.05■□□□□ 0.8
TRAIPQ9BWF2 TK1-205ENST00000590862 642 ntTSL 3 BASIC20.05■□□□□ 0.8
TRAIPQ9BWF2 CCDC106-206ENST00000591241 1153 ntTSL 3 BASIC20.05■□□□□ 0.8
TRAIPQ9BWF2 VBP1-201ENST00000286428 1686 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
TRAIPQ9BWF2 SLMAP-201ENST00000295951 5433 ntAPPRIS P1 TSL 5 BASIC20.05■□□□□ 0.8
TRAIPQ9BWF2 FAM110D-201ENST00000374268 2858 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
TRAIPQ9BWF2 PRRT1-201ENST00000211413 1909 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
TRAIPQ9BWF2 AC011944.1-201ENST00000316148 1900 ntTSL 2 BASIC20.05■□□□□ 0.8
TRAIPQ9BWF2 CROCCP3-202ENST00000420820 1947 ntBASIC20.05■□□□□ 0.8
TRAIPQ9BWF2 AL163051.1-201ENST00000569214 1512 ntBASIC20.05■□□□□ 0.8
TRAIPQ9BWF2 AL691447.2-201ENST00000454869 2162 ntTSL 2 BASIC20.05■□□□□ 0.8
TRAIPQ9BWF2 TMEM250-201ENST00000418388 2823 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
TRAIPQ9BWF2 CCNJ-203ENST00000465148 2677 ntAPPRIS P1 TSL 2 BASIC20.05■□□□□ 0.8
TRAIPQ9BWF2 DISP3-202ENST00000304391 1495 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
TRAIPQ9BWF2 RNF167-205ENST00000571816 1728 ntAPPRIS P3 TSL 5 BASIC20.05■□□□□ 0.8
TRAIPQ9BWF2 TUBA3FP-202ENST00000422086 1974 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
TRAIPQ9BWF2 MFSD1-201ENST00000264266 1594 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
TRAIPQ9BWF2 ATRN-201ENST00000262919 8633 ntAPPRIS P4 TSL 5 BASIC20.04■□□□□ 0.8
TRAIPQ9BWF2 TULP1-208ENST00000614066 2084 ntAPPRIS ALT2 TSL 5 BASIC20.04■□□□□ 0.8
TRAIPQ9BWF2 NFATC1-217ENST00000591814 4819 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
TRAIPQ9BWF2 CASP16P-202ENST00000575497 2161 ntTSL 2 BASIC20.04■□□□□ 0.8
TRAIPQ9BWF2 ACHE-205ENST00000419336 1906 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
TRAIPQ9BWF2 ZNF414-201ENST00000255616 1178 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
TRAIPQ9BWF2 MOS-201ENST00000311923 1041 ntAPPRIS P1 BASIC20.04■□□□□ 0.8
TRAIPQ9BWF2 DBNDD2-202ENST00000360981 1078 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
TRAIPQ9BWF2 PRAP1-202ENST00000463201 587 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
TRAIPQ9BWF2 LINC02237-202ENST00000521904 477 ntTSL 3 BASIC20.04■□□□□ 0.8
TRAIPQ9BWF2 AC012615.1-201ENST00000565797 1299 ntBASIC20.04■□□□□ 0.8
TRAIPQ9BWF2 AC011247.3-202ENST00000605062 570 ntTSL 4 BASIC20.04■□□□□ 0.8
TRAIPQ9BWF2 ADCY5-202ENST00000462833 7311 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 49.7 ms