Protein–RNA interactions for Protein: Q99829

CPNE1, Copine-1, humanhuman

Predictions only

Length 537 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE1Q99829 ZDHHC4-205ENST00000396713 1552 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
CPNE1Q99829 C21orf58-203ENST00000397680 2624 ntAPPRIS ALT2 TSL 2 BASIC18.36■□□□□ 0.53
CPNE1Q99829 EIF2B4-210ENST00000493344 1949 ntTSL 5 BASIC18.36■□□□□ 0.53
CPNE1Q99829 TADA2B-204ENST00000512388 1343 ntTSL 5 BASIC18.36■□□□□ 0.53
CPNE1Q99829 AC098864.1-204ENST00000513752 805 ntTSL 4 BASIC18.36■□□□□ 0.53
CPNE1Q99829 DENND3-207ENST00000518347 850 ntTSL 2 BASIC18.36■□□□□ 0.53
CPNE1Q99829 CCNC-207ENST00000518714 1426 ntTSL 5 BASIC18.36■□□□□ 0.53
CPNE1Q99829 GNE-204ENST00000539208 2190 ntTSL 2 BASIC18.36■□□□□ 0.53
CPNE1Q99829 FOXN3-AS1-201ENST00000555562 1077 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
CPNE1Q99829 HOXB1-202ENST00000577092 1414 ntBASIC18.36■□□□□ 0.53
CPNE1Q99829 AC233702.5-201ENST00000584107 538 ntBASIC18.36■□□□□ 0.53
CPNE1Q99829 TPSB2-201ENST00000606293 1165 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
CPNE1Q99829 BX649632.1-201ENST00000610187 819 ntTSL 3 BASIC18.36■□□□□ 0.53
CPNE1Q99829 SCAND1-203ENST00000615116 1371 ntAPPRIS P1 TSL 5 BASIC18.36■□□□□ 0.53
CPNE1Q99829 NCOA6-207ENST00000616167 3271 ntAPPRIS ALT2 TSL 5 BASIC18.36■□□□□ 0.53
CPNE1Q99829 AC215522.2-202ENST00000633163 1143 ntTSL 5 BASIC18.36■□□□□ 0.53
CPNE1Q99829 AL049637.2-201ENST00000641778 930 ntBASIC18.36■□□□□ 0.53
CPNE1Q99829 SREBF2-201ENST00000361204 5240 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
CPNE1Q99829 SNAP91-201ENST00000195649 4434 ntAPPRIS ALT2 TSL 5 BASIC18.36■□□□□ 0.53
CPNE1Q99829 SNAP91-204ENST00000369694 4449 ntAPPRIS P2 TSL 5 BASIC18.36■□□□□ 0.53
CPNE1Q99829 UNC5B-201ENST00000335350 6841 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
CPNE1Q99829 COL5A3-201ENST00000264828 6174 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
CPNE1Q99829 VEGFA-206ENST00000372077 2834 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
CPNE1Q99829 SLC39A1-210ENST00000617697 2214 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
CPNE1Q99829 LINC00896-202ENST00000609602 2128 ntBASIC18.35■□□□□ 0.53
CPNE1Q99829 SDHA-204ENST00000504309 2067 ntTSL 5 BASIC18.35■□□□□ 0.53
CPNE1Q99829 AC120049.1-201ENST00000592638 2065 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
CPNE1Q99829 FCGRT-201ENST00000221466 1798 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CPNE1Q99829 PITPNM2-209ENST00000546049 1793 ntTSL 5 BASIC18.35■□□□□ 0.53
CPNE1Q99829 CCDC88C-203ENST00000389856 1641 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
CPNE1Q99829 UROS-202ENST00000368778 1556 ntTSL 2 BASIC18.35■□□□□ 0.53
CPNE1Q99829 HTR7P1-202ENST00000624664 4411 ntBASIC18.35■□□□□ 0.53
CPNE1Q99829 MARK2-207ENST00000502399 2885 ntAPPRIS ALT2 TSL 5 BASIC18.35■□□□□ 0.53
CPNE1Q99829 KRT8P7-201ENST00000533003 1432 ntBASIC18.35■□□□□ 0.53
CPNE1Q99829 SLC25A3-211ENST00000548847 1369 ntTSL 5 BASIC18.35■□□□□ 0.53
CPNE1Q99829 ADORA2A-213ENST00000610595 2736 ntAPPRIS P1 TSL 2 BASIC18.35■□□□□ 0.53
CPNE1Q99829 TPPP3-201ENST00000290942 1116 ntAPPRIS P1 TSL 2 BASIC18.35■□□□□ 0.53
CPNE1Q99829 PRSS3-201ENST00000342836 1144 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
CPNE1Q99829 AL360181.5-201ENST00000368554 1044 ntAPPRIS P1 TSL 2 BASIC18.35■□□□□ 0.53
CPNE1Q99829 TPPP3-202ENST00000393957 1058 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CPNE1Q99829 SERTAD4-AS1-201ENST00000437764 726 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
CPNE1Q99829 AL445645.1-201ENST00000451318 1019 ntTSL 2 BASIC18.35■□□□□ 0.53
CPNE1Q99829 LINC02167-201ENST00000562769 594 ntTSL 3 BASIC18.35■□□□□ 0.53
CPNE1Q99829 AC100835.1-201ENST00000565737 498 ntTSL 5 BASIC18.35■□□□□ 0.53
CPNE1Q99829 AP005263.1-201ENST00000579126 914 ntTSL 2 BASIC18.35■□□□□ 0.53
CPNE1Q99829 AP005242.2-201ENST00000580065 1175 ntBASIC18.35■□□□□ 0.53
CPNE1Q99829 AC003005.1-201ENST00000601674 582 ntAPPRIS P5 TSL 2 BASIC18.35■□□□□ 0.53
CPNE1Q99829 RABAC1-210ENST00000601891 628 ntTSL 3 BASIC18.35■□□□□ 0.53
CPNE1Q99829 NR2C2-206ENST00000425241 2494 ntAPPRIS P1 TSL 2 BASIC18.35■□□□□ 0.53
CPNE1Q99829 PTPN12-201ENST00000248594 3406 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CPNE1Q99829 RELA-226ENST00000612991 2266 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
CPNE1Q99829 RNPS1-203ENST00000397086 2069 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CPNE1Q99829 STK4-201ENST00000372801 2038 ntTSL 2 BASIC18.35■□□□□ 0.53
CPNE1Q99829 TBKBP1-204ENST00000622396 2010 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
CPNE1Q99829 TLX1-201ENST00000370196 2906 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CPNE1Q99829 ALAS2-203ENST00000396198 1936 ntTSL 5 BASIC18.35■□□□□ 0.53
CPNE1Q99829 VIM-201ENST00000224237 1868 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CPNE1Q99829 ISG20-201ENST00000306072 1856 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CPNE1Q99829 NRXN1-220ENST00000611589 1857 ntTSL 5 BASIC18.35■□□□□ 0.53
CPNE1Q99829 ARHGEF28-203ENST00000426542 6118 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
CPNE1Q99829 STK10-201ENST00000176763 6060 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CPNE1Q99829 ZNF22-201ENST00000298299 2551 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CPNE1Q99829 KIAA1549-201ENST00000422774 6283 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
CPNE1Q99829 ERCC2-205ENST00000485403 1538 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
CPNE1Q99829 RPS6KA5-201ENST00000418736 2249 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
CPNE1Q99829 SLC35A2-217ENST00000635589 1424 ntTSL 2 BASIC18.34■□□□□ 0.53
CPNE1Q99829 DHRS4L2-201ENST00000335125 1370 ntAPPRIS P2 TSL 1 (best) BASIC18.34■□□□□ 0.53
CPNE1Q99829 PIGZ-202ENST00000412723 2701 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
CPNE1Q99829 ZNF416-201ENST00000196489 2561 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
CPNE1Q99829 NPFFR2-201ENST00000308744 1922 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
CPNE1Q99829 LIME1-201ENST00000309546 1178 ntAPPRIS P3 TSL 1 (best) BASIC18.34■□□□□ 0.53
CPNE1Q99829 MRPL54-201ENST00000330133 626 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
CPNE1Q99829 C6orf132-202ENST00000356542 894 ntAPPRIS ALT2 TSL 2 BASIC18.34■□□□□ 0.53
CPNE1Q99829 NPM3-201ENST00000370110 877 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
CPNE1Q99829 RAP1B-203ENST00000378985 1017 ntTSL 2 BASIC18.34■□□□□ 0.53
CPNE1Q99829 POMC-202ENST00000380794 1295 ntAPPRIS P1 TSL 2 BASIC18.34■□□□□ 0.53
CPNE1Q99829 LINC01534-202ENST00000433232 554 ntTSL 3 BASIC18.34■□□□□ 0.53
CPNE1Q99829 AL355355.2-201ENST00000442321 338 ntBASIC18.34■□□□□ 0.53
CPNE1Q99829 AC098590.1-201ENST00000468126 897 ntBASIC18.34■□□□□ 0.53
CPNE1Q99829 PENK-204ENST00000518770 863 ntTSL 2 BASIC18.34■□□□□ 0.53
CPNE1Q99829 RAP1B-221ENST00000540209 1264 ntTSL 2 BASIC18.34■□□□□ 0.53
CPNE1Q99829 MNT-208ENST00000575394 606 ntTSL 4 BASIC18.34■□□□□ 0.53
CPNE1Q99829 NAT14-202ENST00000587400 416 ntTSL 5 BASIC18.34■□□□□ 0.53
CPNE1Q99829 TTLL8-201ENST00000266182 2505 ntAPPRIS ALT2 TSL 5 BASIC18.34■□□□□ 0.53
CPNE1Q99829 TBXAS1-204ENST00000416849 2505 ntTSL 5 BASIC18.34■□□□□ 0.53
CPNE1Q99829 TAB2-209ENST00000637181 4230 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
CPNE1Q99829 AP001273.2-201ENST00000638767 2993 ntAPPRIS P1 TSL 5 BASIC18.34■□□□□ 0.53
CPNE1Q99829 LPAR2-201ENST00000407877 1791 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
CPNE1Q99829 AC060780.1-201ENST00000635600 1782 ntTSL 5 BASIC18.34■□□□□ 0.53
CPNE1Q99829 SLC12A9-215ENST00000540482 2269 ntTSL 2 BASIC18.34■□□□□ 0.53
CPNE1Q99829 CTSB-202ENST00000353047 3875 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
CPNE1Q99829 XXYLT1-201ENST00000310380 2727 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
CPNE1Q99829 DACH1-202ENST00000613252 5233 ntAPPRIS P2 TSL 1 (best) BASIC18.34■□□□□ 0.53
CPNE1Q99829 ITGA7-201ENST00000257879 4120 ntAPPRIS P3 TSL 1 (best) BASIC18.34■□□□□ 0.53
CPNE1Q99829 FBXL7-202ENST00000504595 4562 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
CPNE1Q99829 HNRNPK-202ENST00000360384 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC18.33■□□□□ 0.53
CPNE1Q99829 TRAPPC12-201ENST00000324266 2508 ntAPPRIS P2 TSL 1 (best) BASIC18.33■□□□□ 0.53
CPNE1Q99829 TRAF4-201ENST00000262395 2923 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
CPNE1Q99829 AL355987.1-201ENST00000435202 2420 ntAPPRIS P1 TSL 2 BASIC18.33■□□□□ 0.53
CPNE1Q99829 AL445686.2-201ENST00000577528 1445 ntTSL 3 BASIC18.33■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 31.5 ms