Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 TSPY8-203ENST00000383005 435 ntTSL 5 BASIC17.3■□□□□ 0.36
PTCHD1Q96NR3 NFU1-202ENST00000394305 1058 ntTSL 5 BASIC17.3■□□□□ 0.36
PTCHD1Q96NR3 DAP-202ENST00000432074 1048 ntTSL 2 BASIC17.3■□□□□ 0.36
PTCHD1Q96NR3 CD320-202ENST00000537716 1119 ntTSL 2 BASIC17.3■□□□□ 0.36
PTCHD1Q96NR3 IFI27L1-206ENST00000554562 571 ntTSL 3 BASIC17.3■□□□□ 0.36
PTCHD1Q96NR3 ZNF444P1-201ENST00000559497 298 ntBASIC17.3■□□□□ 0.36
PTCHD1Q96NR3 USF2-205ENST00000594064 1179 ntTSL 2 BASIC17.3■□□□□ 0.36
PTCHD1Q96NR3 AC010422.3-201ENST00000597692 838 ntAPPRIS P1 TSL 2 BASIC17.3■□□□□ 0.36
PTCHD1Q96NR3 SYNGR4-204ENST00000601610 859 ntTSL 3 BASIC17.3■□□□□ 0.36
PTCHD1Q96NR3 RNASET2-213ENST00000611959 1124 ntTSL 5 BASIC17.3■□□□□ 0.36
PTCHD1Q96NR3 C1QTNF8-202ENST00000621771 897 ntTSL 5 BASIC17.3■□□□□ 0.36
PTCHD1Q96NR3 AC079602.3-201ENST00000623931 403 ntBASIC17.3■□□□□ 0.36
PTCHD1Q96NR3 TFAP4-201ENST00000204517 2215 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
PTCHD1Q96NR3 OGG1-203ENST00000302036 2220 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
PTCHD1Q96NR3 ENTPD8-202ENST00000371506 2222 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
PTCHD1Q96NR3 SLC22A23-203ENST00000406686 5658 ntAPPRIS P2 TSL 5 BASIC17.3■□□□□ 0.36
PTCHD1Q96NR3 ARRB1-201ENST00000360025 1895 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
PTCHD1Q96NR3 AP001351.1-201ENST00000501397 1865 ntTSL 2 BASIC17.3■□□□□ 0.36
PTCHD1Q96NR3 GUCA1A-201ENST00000053469 1874 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
PTCHD1Q96NR3 LDLRAD4-211ENST00000587757 2171 ntTSL 2 BASIC17.3■□□□□ 0.36
PTCHD1Q96NR3 CCDC34-201ENST00000317945 2109 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
PTCHD1Q96NR3 KIAA1522-204ENST00000401073 5438 ntAPPRIS P3 TSL 2 BASIC17.3■□□□□ 0.36
PTCHD1Q96NR3 ZFC3H1-211ENST00000552037 1484 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
PTCHD1Q96NR3 DDX42-216ENST00000583590 4148 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
PTCHD1Q96NR3 NEFHP1-201ENST00000412845 2629 ntBASIC17.3■□□□□ 0.36
PTCHD1Q96NR3 MROH1-202ENST00000423230 1712 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
PTCHD1Q96NR3 KLHL17-201ENST00000338591 2560 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
PTCHD1Q96NR3 WIZP1-201ENST00000531444 2299 ntBASIC17.3■□□□□ 0.36
PTCHD1Q96NR3 ZFYVE21-202ENST00000311141 1383 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
PTCHD1Q96NR3 MIR4300HG-201ENST00000500502 1397 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
PTCHD1Q96NR3 CCDC63-202ENST00000545036 1887 ntAPPRIS ALT2 TSL 2 BASIC17.29■□□□□ 0.36
PTCHD1Q96NR3 RBM15B-201ENST00000563281 6641 ntAPPRIS P1 BASIC17.29■□□□□ 0.36
PTCHD1Q96NR3 TAB2-209ENST00000637181 4230 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
PTCHD1Q96NR3 BAIAP2-204ENST00000428708 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
PTCHD1Q96NR3 INTS10-201ENST00000397977 2804 ntAPPRIS P1 TSL 2 BASIC17.29■□□□□ 0.36
PTCHD1Q96NR3 TMEM190-201ENST00000291934 593 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
PTCHD1Q96NR3 SMYD3-204ENST00000403792 1209 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
PTCHD1Q96NR3 AP006284.1-202ENST00000527113 527 ntTSL 4 BASIC17.29■□□□□ 0.36
PTCHD1Q96NR3 AP003396.3-201ENST00000530918 778 ntTSL 5 BASIC17.29■□□□□ 0.36
PTCHD1Q96NR3 AP000777.3-201ENST00000538705 491 ntTSL 3 BASIC17.29■□□□□ 0.36
PTCHD1Q96NR3 C17orf49-208ENST00000552402 760 ntTSL 2 BASIC17.29■□□□□ 0.36
PTCHD1Q96NR3 AL136038.4-201ENST00000603606 1261 ntBASIC17.29■□□□□ 0.36
PTCHD1Q96NR3 AC083849.1-201ENST00000615227 514 ntBASIC17.29■□□□□ 0.36
PTCHD1Q96NR3 CADM1-222ENST00000616271 1246 ntTSL 5 BASIC17.29■□□□□ 0.36
PTCHD1Q96NR3 ILKAP-212ENST00000622223 1088 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
PTCHD1Q96NR3 AL121956.5-201ENST00000625261 221 ntBASIC17.29■□□□□ 0.36
PTCHD1Q96NR3 AGER-205ENST00000375069 1538 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
PTCHD1Q96NR3 COPS7A-204ENST00000534947 2034 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
PTCHD1Q96NR3 IFRD2-204ENST00000436390 2275 ntAPPRIS P1 TSL 2 BASIC17.29■□□□□ 0.36
PTCHD1Q96NR3 P3H1-204ENST00000397054 2705 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
PTCHD1Q96NR3 CCDC50-202ENST00000392456 2454 ntAPPRIS P4 TSL 1 (best) BASIC17.29■□□□□ 0.36
PTCHD1Q96NR3 TMPRSS5-205ENST00000538955 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
PTCHD1Q96NR3 PSAP-205ENST00000610929 1969 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
PTCHD1Q96NR3 SYT17-207ENST00000568115 1721 ntTSL 5 BASIC17.29■□□□□ 0.36
PTCHD1Q96NR3 NUAK1-201ENST00000261402 6828 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
PTCHD1Q96NR3 NFATC1-201ENST00000253506 4642 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
PTCHD1Q96NR3 PSMD3-201ENST00000264639 2158 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
PTCHD1Q96NR3 HSPB8-201ENST00000281938 2152 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
PTCHD1Q96NR3 GRB10-205ENST00000401949 2627 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
PTCHD1Q96NR3 SNAP47-201ENST00000315781 2367 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
PTCHD1Q96NR3 AL391807.1-203ENST00000604392 2365 ntBASIC17.29■□□□□ 0.36
PTCHD1Q96NR3 LRRC27-203ENST00000368613 2113 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
PTCHD1Q96NR3 WDR18-202ENST00000585809 1608 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
PTCHD1Q96NR3 NUP50-AS1-201ENST00000426282 2076 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
PTCHD1Q96NR3 RNF114-201ENST00000244061 2503 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
PTCHD1Q96NR3 FGFBP3-201ENST00000311575 2545 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
PTCHD1Q96NR3 MYEOV-201ENST00000308946 2287 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
PTCHD1Q96NR3 PALM3-201ENST00000340790 2262 ntAPPRIS P2 TSL 5 BASIC17.28■□□□□ 0.36
PTCHD1Q96NR3 CDK11A-205ENST00000378633 2458 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
PTCHD1Q96NR3 SRRM2-AS1-203ENST00000571305 1344 ntTSL 2 BASIC17.28■□□□□ 0.36
PTCHD1Q96NR3 GOLGA2P10-204ENST00000618004 1349 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
PTCHD1Q96NR3 ADORA2A-214ENST00000611543 2412 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
PTCHD1Q96NR3 RPH3A-203ENST00000543106 2581 ntAPPRIS ALT2 TSL 2 BASIC17.28■□□□□ 0.36
PTCHD1Q96NR3 IGLL1-201ENST00000249053 716 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
PTCHD1Q96NR3 MADCAM1-203ENST00000382683 603 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
PTCHD1Q96NR3 EEF1D-202ENST00000395119 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
PTCHD1Q96NR3 AP002807.1-202ENST00000526897 791 ntTSL 2 BASIC17.28■□□□□ 0.36
PTCHD1Q96NR3 AC087623.2-201ENST00000528407 534 ntTSL 4 BASIC17.28■□□□□ 0.36
PTCHD1Q96NR3 AKTIP-212ENST00000570004 1162 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
PTCHD1Q96NR3 NBL1-212ENST00000621723 2133 ntAPPRIS P3 TSL 2 BASIC17.28■□□□□ 0.36
PTCHD1Q96NR3 AC064853.5-201ENST00000641976 258 ntAPPRIS P1 BASIC17.28■□□□□ 0.36
PTCHD1Q96NR3 PBK-203ENST00000522944 1499 ntTSL 2 BASIC17.28■□□□□ 0.36
PTCHD1Q96NR3 ZNFX1-203ENST00000371754 5235 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
PTCHD1Q96NR3 TBX20-201ENST00000408931 1871 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
PTCHD1Q96NR3 PLEKHB2-204ENST00000409158 2277 ntTSL 2 BASIC17.28■□□□□ 0.36
PTCHD1Q96NR3 COL16A1-203ENST00000373672 5736 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
PTCHD1Q96NR3 PEPD-203ENST00000436370 1638 ntTSL 2 BASIC17.28■□□□□ 0.36
PTCHD1Q96NR3 CENPT-215ENST00000564817 1638 ntAPPRIS ALT2 TSL 5 BASIC17.28■□□□□ 0.36
PTCHD1Q96NR3 DUS1L-202ENST00000354321 2151 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
PTCHD1Q96NR3 BSCL2-201ENST00000278893 1364 ntAPPRIS ALT2 TSL 2 BASIC17.28■□□□□ 0.36
PTCHD1Q96NR3 FAM50A-202ENST00000393600 1352 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
PTCHD1Q96NR3 RAP1GAP-204ENST00000374761 3318 ntTSL 5 BASIC17.27■□□□□ 0.36
PTCHD1Q96NR3 CACNA1B-206ENST00000371372 9790 ntAPPRIS P4 TSL 5 BASIC17.27■□□□□ 0.36
PTCHD1Q96NR3 CPSF3-201ENST00000238112 2345 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
PTCHD1Q96NR3 PFDN6-206ENST00000463584 1915 ntTSL 3 BASIC17.27■□□□□ 0.36
PTCHD1Q96NR3 EIF5-201ENST00000216554 5945 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
PTCHD1Q96NR3 FAM3A-204ENST00000369643 1521 ntAPPRIS P1 TSL 2 BASIC17.27■□□□□ 0.36
PTCHD1Q96NR3 AKAP17A-201ENST00000313871 3204 ntAPPRIS P2 TSL 1 (best) BASIC17.27■□□□□ 0.36
PTCHD1Q96NR3 NDUFB9-206ENST00000522532 1319 ntTSL 2 BASIC17.27■□□□□ 0.36
PTCHD1Q96NR3 NEK2-205ENST00000540251 1318 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 28.4 ms