Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 GAB1-201ENST00000262994 2648 ntAPPRIS ALT1 TSL 1 (best) BASIC19.82■□□□□ 0.76
CCDC42Q96M95 CYP4F8-210ENST00000612078 1889 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
CCDC42Q96M95 SLC35F3-201ENST00000366617 2762 ntAPPRIS ALT1 TSL 1 (best) BASIC19.82■□□□□ 0.76
CCDC42Q96M95 RGN-204ENST00000457380 2041 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
CCDC42Q96M95 EDC3-214ENST00000568176 1825 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
CCDC42Q96M95 FAM167B-201ENST00000373582 936 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
CCDC42Q96M95 AP000697.1-201ENST00000430607 339 ntTSL 5 BASIC19.82■□□□□ 0.76
CCDC42Q96M95 AC019257.1-201ENST00000517676 557 ntTSL 5 BASIC19.82■□□□□ 0.76
CCDC42Q96M95 FAM86C2P-201ENST00000525180 435 ntTSL 4 BASIC19.82■□□□□ 0.76
CCDC42Q96M95 ADD3-AS1-204ENST00000627565 388 ntTSL 3 BASIC19.82■□□□□ 0.76
CCDC42Q96M95 TBC1D3P2-202ENST00000577902 1649 ntBASIC19.82■□□□□ 0.76
CCDC42Q96M95 ZBTB16-201ENST00000335953 2523 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
CCDC42Q96M95 PPP1R7-202ENST00000272983 1954 ntTSL 2 BASIC19.82■□□□□ 0.76
CCDC42Q96M95 IFFO1-201ENST00000336604 2686 ntAPPRIS P3 TSL 1 (best) BASIC19.82■□□□□ 0.76
CCDC42Q96M95 HNRNPD-201ENST00000313899 3033 ntAPPRIS P4 TSL 1 (best) BASIC19.82■□□□□ 0.76
CCDC42Q96M95 LHFPL6-201ENST00000379589 2110 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
CCDC42Q96M95 SNAPC3-207ENST00000610884 2453 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
CCDC42Q96M95 MAP4K4-202ENST00000324219 7526 ntTSL 5 BASIC19.82■□□□□ 0.76
CCDC42Q96M95 SH2D2A-201ENST00000368198 1599 ntAPPRIS ALT2 TSL 1 (best) BASIC19.82■□□□□ 0.76
CCDC42Q96M95 FAM20A-205ENST00000592554 2955 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
CCDC42Q96M95 TCF4-201ENST00000354452 3482 ntAPPRIS ALT1 TSL 5 BASIC19.82■□□□□ 0.76
CCDC42Q96M95 OLA1-201ENST00000284719 4417 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
CCDC42Q96M95 VASH1-201ENST00000167106 5728 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
CCDC42Q96M95 KCNQ2-213ENST00000626839 9213 ntAPPRIS ALT1 TSL 1 (best) BASIC19.81■□□□□ 0.76
CCDC42Q96M95 ARMC10-209ENST00000454559 2347 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
CCDC42Q96M95 C1orf159-205ENST00000421241 1841 ntAPPRIS P3 TSL 2 BASIC19.81■□□□□ 0.76
CCDC42Q96M95 AL109910.2-201ENST00000607733 1953 ntTSL 2 BASIC19.81■□□□□ 0.76
CCDC42Q96M95 USP7-201ENST00000344836 5412 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
CCDC42Q96M95 SLC12A9-215ENST00000540482 2269 ntTSL 2 BASIC19.81■□□□□ 0.76
CCDC42Q96M95 NDFIP1-201ENST00000253814 3851 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
CCDC42Q96M95 PITPNM2-209ENST00000546049 1793 ntTSL 5 BASIC19.81■□□□□ 0.76
CCDC42Q96M95 STK25-201ENST00000316586 4619 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
CCDC42Q96M95 CTAG2-201ENST00000247306 993 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
CCDC42Q96M95 ICAM4-202ENST00000380770 1211 ntAPPRIS P3 TSL 1 (best) BASIC19.81■□□□□ 0.76
CCDC42Q96M95 STK24-AS1-201ENST00000434547 1278 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
CCDC42Q96M95 TK2-204ENST00000525974 1178 ntTSL 2 BASIC19.81■□□□□ 0.76
CCDC42Q96M95 KDM2B-217ENST00000543852 1188 ntTSL 5 BASIC19.81■□□□□ 0.76
CCDC42Q96M95 STAC3-202ENST00000546246 1014 ntTSL 2 BASIC19.81■□□□□ 0.76
CCDC42Q96M95 CLN6-206ENST00000565471 1075 ntTSL 2 BASIC19.81■□□□□ 0.76
CCDC42Q96M95 RPN2-201ENST00000237530 2515 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
CCDC42Q96M95 CD14-201ENST00000302014 1886 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
CCDC42Q96M95 HNRNPK-202ENST00000360384 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC19.81■□□□□ 0.76
CCDC42Q96M95 IL18BP-207ENST00000404792 2172 ntAPPRIS P2 TSL 1 (best) BASIC19.81■□□□□ 0.76
CCDC42Q96M95 PSRC1-205ENST00000409138 1826 ntTSL 2 BASIC19.81■□□□□ 0.76
CCDC42Q96M95 CDC73-201ENST00000367435 4969 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
CCDC42Q96M95 SLC2A8-202ENST00000373360 1937 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
CCDC42Q96M95 OGFOD2-212ENST00000538755 1949 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
CCDC42Q96M95 PPT2-247ENST00000375143 1754 ntAPPRIS ALT2 TSL 5 BASIC19.8■□□□□ 0.76
CCDC42Q96M95 RUBCN-206ENST00000449205 1603 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
CCDC42Q96M95 AC034236.2-201ENST00000606662 1610 ntBASIC19.8■□□□□ 0.76
CCDC42Q96M95 UBR3-203ENST00000418381 7951 ntAPPRIS P1 TSL 5 BASIC19.8■□□□□ 0.76
CCDC42Q96M95 FSCN1P1-201ENST00000568912 1481 ntBASIC19.8■□□□□ 0.76
CCDC42Q96M95 OARD1-202ENST00000424266 1337 ntAPPRIS P1 TSL 2 BASIC19.8■□□□□ 0.76
CCDC42Q96M95 MSANTD1-201ENST00000438480 2922 ntAPPRIS P3 TSL 5 BASIC19.8■□□□□ 0.76
CCDC42Q96M95 TMEM128-201ENST00000254742 1737 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
CCDC42Q96M95 C18orf21-205ENST00000592875 1581 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
CCDC42Q96M95 MAPKAPK3-208ENST00000621469 2563 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
CCDC42Q96M95 ENPP1-201ENST00000360971 7442 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
CCDC42Q96M95 MT3-201ENST00000200691 569 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
CCDC42Q96M95 AL023284.2-201ENST00000405850 579 ntBASIC19.8■□□□□ 0.76
CCDC42Q96M95 MCCD1P1-208ENST00000445732 328 ntBASIC19.8■□□□□ 0.76
CCDC42Q96M95 AC128676.1-201ENST00000454392 318 ntBASIC19.8■□□□□ 0.76
CCDC42Q96M95 AC003982.1-201ENST00000477404 484 ntTSL 2 BASIC19.8■□□□□ 0.76
CCDC42Q96M95 PDXDC2P-202ENST00000527016 543 ntTSL 3 BASIC19.8■□□□□ 0.76
CCDC42Q96M95 RARRES2P10-201ENST00000564312 460 ntBASIC19.8■□□□□ 0.76
CCDC42Q96M95 AC007493.2-201ENST00000568427 478 ntTSL 3 BASIC19.8■□□□□ 0.76
CCDC42Q96M95 AP000692.2-201ENST00000608391 879 ntBASIC19.8■□□□□ 0.76
CCDC42Q96M95 VPS37A-201ENST00000324849 4906 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
CCDC42Q96M95 BIN1-208ENST00000376113 1832 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
CCDC42Q96M95 P2RY6-202ENST00000393590 2398 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
CCDC42Q96M95 ZCWPW1-202ENST00000398027 2356 ntAPPRIS P3 TSL 1 (best) BASIC19.8■□□□□ 0.76
CCDC42Q96M95 TMSB4Y-201ENST00000284856 1669 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
CCDC42Q96M95 STK4-201ENST00000372801 2038 ntTSL 2 BASIC19.8■□□□□ 0.76
CCDC42Q96M95 CDK11A-203ENST00000357760 2446 ntAPPRIS ALT1 TSL 1 (best) BASIC19.8■□□□□ 0.76
CCDC42Q96M95 CDK11A-204ENST00000358779 2419 ntAPPRIS ALT1 TSL 1 (best) BASIC19.8■□□□□ 0.76
CCDC42Q96M95 CDK11A-206ENST00000378638 2429 ntTSL 5 BASIC19.8■□□□□ 0.76
CCDC42Q96M95 CDK11A-208ENST00000404249 2449 ntAPPRIS P4 TSL 1 (best) BASIC19.8■□□□□ 0.76
CCDC42Q96M95 GATA2-202ENST00000430265 2525 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
CCDC42Q96M95 KDM1A-201ENST00000356634 3033 ntAPPRIS P3 TSL 1 (best) BASIC19.79■□□□□ 0.76
CCDC42Q96M95 MRM2-203ENST00000440306 1570 ntAPPRIS P1 TSL 5 BASIC19.79■□□□□ 0.76
CCDC42Q96M95 FBXL5-202ENST00000412094 2837 ntAPPRIS ALT1 TSL 1 (best) BASIC19.79■□□□□ 0.76
CCDC42Q96M95 CAPN15-201ENST00000219611 4744 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
CCDC42Q96M95 CCK-203ENST00000434608 747 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
CCDC42Q96M95 TNFRSF18-204ENST00000486728 727 ntAPPRIS ALT2 TSL 1 (best) BASIC19.79■□□□□ 0.76
CCDC42Q96M95 ARMC4P1-202ENST00000576034 643 ntTSL 2 BASIC19.79■□□□□ 0.76
CCDC42Q96M95 RPS15-203ENST00000586096 570 ntTSL 2 BASIC19.79■□□□□ 0.76
CCDC42Q96M95 OAZ1-211ENST00000602676 1148 ntAPPRIS P3 TSL 5 BASIC19.79■□□□□ 0.76
CCDC42Q96M95 TSTD3-202ENST00000636394 336 ntAPPRIS ALT2 TSL 3 BASIC19.79■□□□□ 0.76
CCDC42Q96M95 PCDHA5-202ENST00000529859 5218 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
CCDC42Q96M95 PHGDH-209ENST00000641074 1780 ntBASIC19.79■□□□□ 0.76
CCDC42Q96M95 CCT7-215ENST00000539919 2031 ntTSL 2 BASIC19.79■□□□□ 0.76
CCDC42Q96M95 MPP2-206ENST00000518766 1896 ntTSL 2 BASIC19.79■□□□□ 0.76
CCDC42Q96M95 TCEA1-201ENST00000396401 2718 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
CCDC42Q96M95 TPGS2-219ENST00000593035 1727 ntAPPRIS ALT2 TSL 2 BASIC19.79■□□□□ 0.76
CCDC42Q96M95 IFNLR1-202ENST00000327575 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC19.79■□□□□ 0.76
CCDC42Q96M95 GALE-201ENST00000374497 1488 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
CCDC42Q96M95 ALDH1A3-201ENST00000329841 3924 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
CCDC42Q96M95 AC120049.1-201ENST00000592638 2065 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
CCDC42Q96M95 ACSS2-201ENST00000253382 2925 ntTSL 2 BASIC19.79■□□□□ 0.76
CCDC42Q96M95 ZDHHC4-205ENST00000396713 1552 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 34.1 ms