Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 VPS37A-201ENST00000324849 4906 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CLIP3Q96DZ5 TFDP2-202ENST00000467072 1853 ntAPPRIS P3 TSL 1 (best) BASIC17.69■□□□□ 0.42
CLIP3Q96DZ5 CLDND1-203ENST00000394181 2170 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
CLIP3Q96DZ5 KRT8P32-201ENST00000512863 1461 ntBASIC17.69■□□□□ 0.42
CLIP3Q96DZ5 FAM109B-201ENST00000321753 2335 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CLIP3Q96DZ5 TRMT2A-203ENST00000404751 2498 ntAPPRIS ALT2 TSL 2 BASIC17.69■□□□□ 0.42
CLIP3Q96DZ5 GAS2L1-210ENST00000621062 2483 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CLIP3Q96DZ5 SRSF2-202ENST00000359995 1927 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CLIP3Q96DZ5 PIP5K1C-205ENST00000589578 2933 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
CLIP3Q96DZ5 HERPUD2-202ENST00000396081 3057 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CLIP3Q96DZ5 MAN2A1-201ENST00000261483 4667 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CLIP3Q96DZ5 CDC73-201ENST00000367435 4969 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CLIP3Q96DZ5 CDK4-202ENST00000312990 1650 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
CLIP3Q96DZ5 P2RY6-203ENST00000393591 1829 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CLIP3Q96DZ5 AL049812.1-201ENST00000432563 2267 ntBASIC17.68■□□□□ 0.42
CLIP3Q96DZ5 TBL2-201ENST00000305632 3161 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CLIP3Q96DZ5 RTN4-201ENST00000317610 2333 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
CLIP3Q96DZ5 REEP2-202ENST00000378339 2170 ntAPPRIS ALT1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CLIP3Q96DZ5 PDE9A-206ENST00000380328 1875 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
CLIP3Q96DZ5 AL645929.1-201ENST00000420084 975 ntBASIC17.68■□□□□ 0.42
CLIP3Q96DZ5 KCNH2-203ENST00000430723 2648 ntTSL 5 BASIC17.68■□□□□ 0.42
CLIP3Q96DZ5 LBX1-AS1-203ENST00000454527 740 ntTSL 5 BASIC17.68■□□□□ 0.42
CLIP3Q96DZ5 C7orf49-209ENST00000483029 596 ntTSL 2 BASIC17.68■□□□□ 0.42
CLIP3Q96DZ5 AC087623.2-201ENST00000528407 534 ntTSL 4 BASIC17.68■□□□□ 0.42
CLIP3Q96DZ5 WWOX-214ENST00000566780 2482 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CLIP3Q96DZ5 CD19-206ENST00000567541 1707 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
CLIP3Q96DZ5 LINC00092-202ENST00000580908 580 ntTSL 2 BASIC17.68■□□□□ 0.42
CLIP3Q96DZ5 NFATC1-210ENST00000587635 2195 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
CLIP3Q96DZ5 ZYG11A-203ENST00000612017 3682 ntTSL 5 BASIC17.68■□□□□ 0.42
CLIP3Q96DZ5 Metazoa_SRP.33-201ENST00000613468 285 ntBASIC17.68■□□□□ 0.42
CLIP3Q96DZ5 GJA3-201ENST00000241125 5211 ntAPPRIS P1 TSL 3 BASIC17.68■□□□□ 0.42
CLIP3Q96DZ5 SPNS1-204ENST00000352260 1948 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
CLIP3Q96DZ5 FAM217A-208ENST00000639338 1929 ntTSL 5 BASIC17.68■□□□□ 0.42
CLIP3Q96DZ5 CORO1A-216ENST00000570045 1622 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CLIP3Q96DZ5 ZNF668-202ENST00000394983 2717 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
CLIP3Q96DZ5 CPZ-202ENST00000360986 2267 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
CLIP3Q96DZ5 PKD1P1-201ENST00000458669 6805 ntBASIC17.68■□□□□ 0.42
CLIP3Q96DZ5 EHMT1-203ENST00000460843 5137 ntAPPRIS P2 TSL 5 BASIC17.68■□□□□ 0.42
CLIP3Q96DZ5 SORT1-201ENST00000256637 7028 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CLIP3Q96DZ5 RHOT1-202ENST00000354266 2919 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
CLIP3Q96DZ5 CRMP1-202ENST00000397890 2911 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CLIP3Q96DZ5 ATXN7L2-202ENST00000369870 2318 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CLIP3Q96DZ5 CDX4-201ENST00000373514 1515 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CLIP3Q96DZ5 SHF-201ENST00000290894 2500 ntAPPRIS P3 TSL 2 BASIC17.67■□□□□ 0.42
CLIP3Q96DZ5 GORASP1-206ENST00000422110 2523 ntTSL 2 BASIC17.67■□□□□ 0.42
CLIP3Q96DZ5 KANSL2-212ENST00000550347 2714 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
CLIP3Q96DZ5 SNX19-209ENST00000530356 1562 ntTSL 2 BASIC17.67■□□□□ 0.42
CLIP3Q96DZ5 UNKL-202ENST00000301712 1431 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
CLIP3Q96DZ5 GPR142-201ENST00000335666 1437 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CLIP3Q96DZ5 KRT8P7-201ENST00000533003 1432 ntBASIC17.67■□□□□ 0.42
CLIP3Q96DZ5 LCORL-201ENST00000326877 5604 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
CLIP3Q96DZ5 TMEM190-201ENST00000291934 593 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CLIP3Q96DZ5 TMEM88-201ENST00000301599 875 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CLIP3Q96DZ5 ZFAND2A-201ENST00000316495 860 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CLIP3Q96DZ5 INSL3-202ENST00000379695 899 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
CLIP3Q96DZ5 ZFAND2A-203ENST00000401903 968 ntTSL 3 BASIC17.67■□□□□ 0.42
CLIP3Q96DZ5 UBE2C-206ENST00000405520 641 ntTSL 2 BASIC17.67■□□□□ 0.42
CLIP3Q96DZ5 KRT18P56-201ENST00000507275 550 ntBASIC17.67■□□□□ 0.42
CLIP3Q96DZ5 CLDN7-204ENST00000571881 735 ntTSL 3 BASIC17.67■□□□□ 0.42
CLIP3Q96DZ5 AC138207.7-201ENST00000584499 668 ntTSL 5 BASIC17.67■□□□□ 0.42
CLIP3Q96DZ5 UBE2C-208ENST00000617055 705 ntTSL 3 BASIC17.67■□□□□ 0.42
CLIP3Q96DZ5 DMRT2-201ENST00000259622 2459 ntTSL 2 BASIC17.67■□□□□ 0.42
CLIP3Q96DZ5 CELF2-217ENST00000638035 1849 ntAPPRIS P3 TSL 5 BASIC17.67■□□□□ 0.42
CLIP3Q96DZ5 UBE2K-203ENST00000445950 2175 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
CLIP3Q96DZ5 AL161938.1-201ENST00000569833 2180 ntBASIC17.67■□□□□ 0.42
CLIP3Q96DZ5 NPTX2-201ENST00000265634 2700 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CLIP3Q96DZ5 IL17RC-215ENST00000455057 2244 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
CLIP3Q96DZ5 POU4F2-201ENST00000281321 3144 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CLIP3Q96DZ5 NAPRT-203ENST00000435154 1877 ntTSL 2 BASIC17.67■□□□□ 0.42
CLIP3Q96DZ5 DIP2A-203ENST00000435722 2760 ntTSL 2 BASIC17.67■□□□□ 0.42
CLIP3Q96DZ5 CCK-202ENST00000396169 1527 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CLIP3Q96DZ5 PNKP-224ENST00000631020 1545 ntTSL 5 BASIC17.67■□□□□ 0.42
CLIP3Q96DZ5 KIRREL1-202ENST00000360089 3304 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
CLIP3Q96DZ5 VASH1-201ENST00000167106 5728 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CLIP3Q96DZ5 AP2M1-201ENST00000292807 1931 ntAPPRIS P4 TSL 5 BASIC17.66■□□□□ 0.42
CLIP3Q96DZ5 NUDT16-201ENST00000502852 1552 ntTSL 2 BASIC17.66■□□□□ 0.42
CLIP3Q96DZ5 TMEM259-209ENST00000592590 2509 ntTSL 5 BASIC17.66■□□□□ 0.42
CLIP3Q96DZ5 SCD5-201ENST00000273908 1995 ntTSL 2 BASIC17.66■□□□□ 0.42
CLIP3Q96DZ5 PGS1-201ENST00000262764 2201 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CLIP3Q96DZ5 BET1L-202ENST00000332865 533 ntTSL 5 BASIC17.66■□□□□ 0.42
CLIP3Q96DZ5 CD1E-211ENST00000368166 1271 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
CLIP3Q96DZ5 MIR564-202ENST00000385049 94 ntBASIC17.66■□□□□ 0.42
CLIP3Q96DZ5 IMMP2L-207ENST00000452895 833 ntAPPRIS P1 TSL 5 BASIC17.66■□□□□ 0.42
CLIP3Q96DZ5 LY6E-209ENST00000521003 740 ntAPPRIS P2 TSL 2 BASIC17.66■□□□□ 0.42
CLIP3Q96DZ5 PRTN3-202ENST00000544537 1036 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
CLIP3Q96DZ5 LINC02317-201ENST00000555413 426 ntTSL 3 BASIC17.66■□□□□ 0.42
CLIP3Q96DZ5 MIR3917-201ENST00000580971 93 ntBASIC17.66■□□□□ 0.42
CLIP3Q96DZ5 LCE1C-202ENST00000607093 644 ntAPPRIS P2 BASIC17.66■□□□□ 0.42
CLIP3Q96DZ5 NDUFV2-AS1-203ENST00000608008 779 ntBASIC17.66■□□□□ 0.42
CLIP3Q96DZ5 NECTIN3-211ENST00000493615 1876 ntAPPRIS ALT2 TSL 2 BASIC17.66■□□□□ 0.42
CLIP3Q96DZ5 FBXO24-201ENST00000241071 2276 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CLIP3Q96DZ5 PCCA-203ENST00000376286 2481 ntTSL 2 BASIC17.66■□□□□ 0.42
CLIP3Q96DZ5 NOMO2-212ENST00000622306 4252 ntAPPRIS P3 TSL 1 (best) BASIC17.66■□□□□ 0.42
CLIP3Q96DZ5 DMWD-201ENST00000270223 3305 ntAPPRIS P2 TSL 1 (best) BASIC17.66■□□□□ 0.42
CLIP3Q96DZ5 TPCN2-201ENST00000294309 2931 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CLIP3Q96DZ5 CCDC3-201ENST00000378825 2731 ntAPPRIS P3 TSL 1 (best) BASIC17.66■□□□□ 0.42
CLIP3Q96DZ5 ZNF419-201ENST00000221735 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
CLIP3Q96DZ5 TES-201ENST00000358204 2782 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CLIP3Q96DZ5 TESMIN-201ENST00000255087 2579 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CLIP3Q96DZ5 PLEKHM2-201ENST00000375793 4004 ntAPPRIS ALT2 TSL 5 BASIC17.66■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 58.8 ms