Protein–RNA interactions for Protein: Q8N3C7

CLIP4, CAP-Gly domain-containing linker protein 4, humanhuman

Predictions only

Length 705 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP4Q8N3C7 GCHFR-205ENST00000559932 695 ntTSL 2 BASIC17.21■□□□□ 0.35
CLIP4Q8N3C7 SLC25A1P4-201ENST00000567977 778 ntBASIC17.21■□□□□ 0.35
CLIP4Q8N3C7 AC233702.5-201ENST00000584107 538 ntBASIC17.21■□□□□ 0.35
CLIP4Q8N3C7 DPP6-202ENST00000377770 3710 ntAPPRIS P4 TSL 1 (best) BASIC17.21■□□□□ 0.35
CLIP4Q8N3C7 TXNL4A-201ENST00000269601 3504 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
CLIP4Q8N3C7 TPST2-201ENST00000338754 5697 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
CLIP4Q8N3C7 GGNBP2-210ENST00000611219 2315 ntTSL 2 BASIC17.21■□□□□ 0.35
CLIP4Q8N3C7 PLK1-201ENST00000300093 2227 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
CLIP4Q8N3C7 SNX17-201ENST00000233575 2044 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
CLIP4Q8N3C7 ARFGAP1-201ENST00000353546 2776 ntAPPRIS P4 TSL 1 (best) BASIC17.21■□□□□ 0.35
CLIP4Q8N3C7 TRIM41-202ENST00000351937 2696 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
CLIP4Q8N3C7 SENP2-201ENST00000296257 5717 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
CLIP4Q8N3C7 KHDC1-202ENST00000370384 1430 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.34
CLIP4Q8N3C7 AC124067.4-201ENST00000519691 2379 ntBASIC17.21■□□□□ 0.34
CLIP4Q8N3C7 DMRT3-201ENST00000190165 2183 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.34
CLIP4Q8N3C7 PTGDR-201ENST00000306051 2942 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
CLIP4Q8N3C7 HYAL1-204ENST00000395144 2081 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
CLIP4Q8N3C7 PLA2R1-202ENST00000392771 5160 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
CLIP4Q8N3C7 UBQLN4-201ENST00000368309 3576 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
CLIP4Q8N3C7 TTLL8-201ENST00000266182 2505 ntAPPRIS ALT2 TSL 5 BASIC17.2■□□□□ 0.34
CLIP4Q8N3C7 LYPD3-201ENST00000244333 1694 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
CLIP4Q8N3C7 ETS1-207ENST00000531611 2134 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
CLIP4Q8N3C7 FGFR1-206ENST00000397091 5702 ntAPPRIS ALT1 TSL 1 (best) BASIC17.2■□□□□ 0.34
CLIP4Q8N3C7 ETV2-203ENST00000402764 1487 ntAPPRIS P3 TSL 1 (best) BASIC17.2■□□□□ 0.34
CLIP4Q8N3C7 RPS6KA3-201ENST00000379565 7918 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
CLIP4Q8N3C7 KCNN4-209ENST00000615047 2029 ntTSL 5 BASIC17.2■□□□□ 0.34
CLIP4Q8N3C7 MAP4K4-205ENST00000350878 7640 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
CLIP4Q8N3C7 AC096733.2-201ENST00000609937 1394 ntBASIC17.2■□□□□ 0.34
CLIP4Q8N3C7 PMEPA1-204ENST00000395814 800 ntTSL 3 BASIC17.2■□□□□ 0.34
CLIP4Q8N3C7 C7orf50-203ENST00000397100 1264 ntAPPRIS P2 TSL 3 BASIC17.2■□□□□ 0.34
CLIP4Q8N3C7 VSIG2-202ENST00000403470 1191 ntTSL 2 BASIC17.2■□□□□ 0.34
CLIP4Q8N3C7 POLR2D-202ENST00000409698 806 ntTSL 2 BASIC17.2■□□□□ 0.34
CLIP4Q8N3C7 FDX2-206ENST00000492239 773 ntTSL 2 BASIC17.2■□□□□ 0.34
CLIP4Q8N3C7 AC091153.3-201ENST00000497885 472 ntTSL 2 BASIC17.2■□□□□ 0.34
CLIP4Q8N3C7 CXCL2-202ENST00000508487 1218 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
CLIP4Q8N3C7 AC117500.4-201ENST00000542797 617 ntTSL 3 BASIC17.2■□□□□ 0.34
CLIP4Q8N3C7 CHEK2P2-202ENST00000555186 864 ntTSL 2 BASIC17.2■□□□□ 0.34
CLIP4Q8N3C7 BX649632.1-201ENST00000610187 819 ntTSL 3 BASIC17.2■□□□□ 0.34
CLIP4Q8N3C7 KANK3-205ENST00000610351 1191 ntTSL 5 BASIC17.2■□□□□ 0.34
CLIP4Q8N3C7 AL049637.2-201ENST00000641778 930 ntBASIC17.2■□□□□ 0.34
CLIP4Q8N3C7 GAL3ST4-201ENST00000360039 2537 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
CLIP4Q8N3C7 ALDH5A1-202ENST00000357578 5248 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
CLIP4Q8N3C7 ATXN2-227ENST00000616825 4575 ntAPPRIS ALT2 TSL 5 BASIC17.2■□□□□ 0.34
CLIP4Q8N3C7 CCDC92-201ENST00000238156 2787 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
CLIP4Q8N3C7 CERS6-201ENST00000305747 7217 ntAPPRIS P3 TSL 2 BASIC17.2■□□□□ 0.34
CLIP4Q8N3C7 HDAC10-201ENST00000216271 2687 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
CLIP4Q8N3C7 GLCCI1-201ENST00000223145 4743 ntAPPRIS P2 TSL 1 (best) BASIC17.2■□□□□ 0.34
CLIP4Q8N3C7 PARVG-205ENST00000422871 3462 ntAPPRIS P1 TSL 5 BASIC17.2■□□□□ 0.34
CLIP4Q8N3C7 TMEM104-202ENST00000417024 1781 ntTSL 2 BASIC17.2■□□□□ 0.34
CLIP4Q8N3C7 RBP4-202ENST00000371467 1314 ntAPPRIS P1 TSL 5 BASIC17.2■□□□□ 0.34
CLIP4Q8N3C7 AC008556.1-201ENST00000610908 2040 ntBASIC17.2■□□□□ 0.34
CLIP4Q8N3C7 MYC-207ENST00000621592 2366 ntAPPRIS ALT1 TSL 1 (best) BASIC17.2■□□□□ 0.34
CLIP4Q8N3C7 HLA-G-205ENST00000428701 1578 ntAPPRIS P2 BASIC17.19■□□□□ 0.34
CLIP4Q8N3C7 DIAPH2-205ENST00000373061 4983 ntAPPRIS ALT2 TSL 5 BASIC17.19■□□□□ 0.34
CLIP4Q8N3C7 PHF12-205ENST00000577226 7679 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
CLIP4Q8N3C7 CLN3-206ENST00000360019 1840 ntTSL 2 BASIC17.19■□□□□ 0.34
CLIP4Q8N3C7 OGFOD2-222ENST00000545317 1481 ntTSL 2 BASIC17.19■□□□□ 0.34
CLIP4Q8N3C7 AEBP1-206ENST00000450684 2571 ntTSL 2 BASIC17.19■□□□□ 0.34
CLIP4Q8N3C7 POMT1-208ENST00000423007 3320 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
CLIP4Q8N3C7 PLCG1-201ENST00000244007 5285 ntAPPRIS P4 TSL 5 BASIC17.19■□□□□ 0.34
CLIP4Q8N3C7 WDR74-201ENST00000278856 1289 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
CLIP4Q8N3C7 LIME1-201ENST00000309546 1178 ntAPPRIS P3 TSL 1 (best) BASIC17.19■□□□□ 0.34
CLIP4Q8N3C7 DUSP23-203ENST00000368109 729 ntAPPRIS P1 TSL 2 BASIC17.19■□□□□ 0.34
CLIP4Q8N3C7 CAMKK2-207ENST00000404169 2116 ntAPPRIS P4 TSL 1 (best) BASIC17.19■□□□□ 0.34
CLIP4Q8N3C7 AC012618.2-201ENST00000428058 849 ntBASIC17.19■□□□□ 0.34
CLIP4Q8N3C7 MFAP1P1-201ENST00000442257 1255 ntBASIC17.19■□□□□ 0.34
CLIP4Q8N3C7 GLYCTK-205ENST00000473032 935 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
CLIP4Q8N3C7 PENK-204ENST00000518770 863 ntTSL 2 BASIC17.19■□□□□ 0.34
CLIP4Q8N3C7 TARBP2-220ENST00000552857 916 ntTSL 5 BASIC17.19■□□□□ 0.34
CLIP4Q8N3C7 CBLN3-202ENST00000555436 718 ntTSL 3 BASIC17.19■□□□□ 0.34
CLIP4Q8N3C7 AC003005.1-201ENST00000601674 582 ntAPPRIS P5 TSL 2 BASIC17.19■□□□□ 0.34
CLIP4Q8N3C7 Z99916.2-201ENST00000604037 246 ntBASIC17.19■□□□□ 0.34
CLIP4Q8N3C7 TSTD3-202ENST00000636394 336 ntAPPRIS ALT2 TSL 3 BASIC17.19■□□□□ 0.34
CLIP4Q8N3C7 PPP1R7-201ENST00000234038 2386 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
CLIP4Q8N3C7 BIRC8-201ENST00000426466 2026 ntAPPRIS P1 BASIC17.19■□□□□ 0.34
CLIP4Q8N3C7 FBXO33-201ENST00000298097 3853 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
CLIP4Q8N3C7 MAP3K6-201ENST00000357582 4136 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
CLIP4Q8N3C7 SWAP70-202ENST00000447399 3538 ntTSL 2 BASIC17.19■□□□□ 0.34
CLIP4Q8N3C7 PPP2R2C-206ENST00000507294 1667 ntTSL 2 BASIC17.19■□□□□ 0.34
CLIP4Q8N3C7 SLC2A14-214ENST00000542505 1650 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
CLIP4Q8N3C7 SEMA6C-210ENST00000621728 1918 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
CLIP4Q8N3C7 MINPP1-201ENST00000371994 2183 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
CLIP4Q8N3C7 MBD1-206ENST00000382948 2434 ntAPPRIS P3 TSL 2 BASIC17.19■□□□□ 0.34
CLIP4Q8N3C7 MEN1-203ENST00000337652 3162 ntAPPRIS P3 TSL 5 BASIC17.19■□□□□ 0.34
CLIP4Q8N3C7 MCF2L-208ENST00000397030 6580 ntTSL 2 BASIC17.19■□□□□ 0.34
CLIP4Q8N3C7 SYT15-205ENST00000503753 1331 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
CLIP4Q8N3C7 MME-217ENST00000616757 1315 ntTSL 5 BASIC17.19■□□□□ 0.34
CLIP4Q8N3C7 PCCA-202ENST00000376285 2494 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
CLIP4Q8N3C7 FAM110A-203ENST00000381939 1737 ntAPPRIS P1 TSL 3 BASIC17.18■□□□□ 0.34
CLIP4Q8N3C7 TP73-AS1-203ENST00000423764 2875 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
CLIP4Q8N3C7 RABGAP1L-204ENST00000357444 2605 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
CLIP4Q8N3C7 PRDM5-201ENST00000264808 5330 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
CLIP4Q8N3C7 NOMO1-208ENST00000620755 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
CLIP4Q8N3C7 ZCWPW1-201ENST00000360951 2110 ntAPPRIS ALT2 TSL 2 BASIC17.18■□□□□ 0.34
CLIP4Q8N3C7 KCNQ2-213ENST00000626839 9213 ntAPPRIS ALT1 TSL 1 (best) BASIC17.18■□□□□ 0.34
CLIP4Q8N3C7 PDE9A-209ENST00000398227 1606 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
CLIP4Q8N3C7 EFHC1-206ENST00000635760 2030 ntTSL 5 BASIC17.18■□□□□ 0.34
CLIP4Q8N3C7 ZNF281-203ENST00000367353 3080 ntAPPRIS P3 TSL 1 (best) BASIC17.18■□□□□ 0.34
CLIP4Q8N3C7 CACNA1A-253ENST00000637927 6847 ntAPPRIS ALT2 TSL 5 BASIC17.18■□□□□ 0.34
CLIP4Q8N3C7 SRMS-201ENST00000217188 1516 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 73.4 ms