Protein–RNA interactions for Protein: Q8IWA6

CCDC60, Coiled-coil domain-containing protein 60, humanhuman

Predicted RBP Predictions only

Length 550 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC60Q8IWA6 LRRC4B-201ENST00000389201 2958 ntAPPRIS P1 TSL 2 BASIC20.36■□□□□ 0.85
CCDC60Q8IWA6 CTNNBL1-204ENST00000405275 2076 ntTSL 5 BASIC20.36■□□□□ 0.85
CCDC60Q8IWA6 DEF8-211ENST00000563795 1767 ntTSL 5 BASIC20.36■□□□□ 0.85
CCDC60Q8IWA6 LIPG-203ENST00000577628 2323 ntTSL 2 BASIC20.36■□□□□ 0.85
CCDC60Q8IWA6 AC233702.3-201ENST00000578656 1387 ntBASIC20.35■□□□□ 0.85
CCDC60Q8IWA6 CCDC34-202ENST00000328697 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC20.35■□□□□ 0.85
CCDC60Q8IWA6 IL4I1-201ENST00000341114 2349 ntAPPRIS P4 TSL 1 (best) BASIC20.35■□□□□ 0.85
CCDC60Q8IWA6 CHIC2-201ENST00000263921 1194 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
CCDC60Q8IWA6 BOLA2B-201ENST00000305321 1012 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
CCDC60Q8IWA6 BOLA2-201ENST00000330978 1012 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
CCDC60Q8IWA6 ITM2C-204ENST00000409704 1106 ntTSL 5 BASIC20.35■□□□□ 0.85
CCDC60Q8IWA6 AC091607.1-201ENST00000490318 1060 ntBASIC20.35■□□□□ 0.85
CCDC60Q8IWA6 RBM14-RBM4-203ENST00000500635 829 ntTSL 2 BASIC20.35■□□□□ 0.85
CCDC60Q8IWA6 AC243773.1-201ENST00000614759 544 ntTSL 5 BASIC20.35■□□□□ 0.85
CCDC60Q8IWA6 EIF3B-202ENST00000397011 2966 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
CCDC60Q8IWA6 SRCIN1-213ENST00000617146 7058 ntAPPRIS P2 TSL 1 (best) BASIC20.35■□□□□ 0.85
CCDC60Q8IWA6 LINC01819-201ENST00000422351 2156 ntTSL 5 BASIC20.35■□□□□ 0.85
CCDC60Q8IWA6 C21orf59-201ENST00000290155 1692 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
CCDC60Q8IWA6 GPATCH3-201ENST00000361720 2123 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
CCDC60Q8IWA6 ABHD14B-204ENST00000461108 1397 ntTSL 2 BASIC20.34■□□□□ 0.85
CCDC60Q8IWA6 ALDH5A1-201ENST00000348925 2266 ntAPPRIS P4 TSL 1 (best) BASIC20.34■□□□□ 0.85
CCDC60Q8IWA6 ROMO1-204ENST00000374078 498 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
CCDC60Q8IWA6 AC105202.1-201ENST00000517833 995 ntTSL 3 BASIC20.34■□□□□ 0.85
CCDC60Q8IWA6 AP005717.1-202ENST00000523563 419 ntTSL 3 BASIC20.34■□□□□ 0.85
CCDC60Q8IWA6 AC012615.1-201ENST00000565797 1299 ntBASIC20.34■□□□□ 0.85
CCDC60Q8IWA6 AC092338.2-202ENST00000567158 611 ntTSL 5 BASIC20.34■□□□□ 0.85
CCDC60Q8IWA6 AP005901.3-202ENST00000581653 237 ntBASIC20.34■□□□□ 0.85
CCDC60Q8IWA6 AC008687.5-201ENST00000593746 558 ntBASIC20.34■□□□□ 0.85
CCDC60Q8IWA6 Metazoa_SRP.104-201ENST00000622099 280 ntBASIC20.34■□□□□ 0.85
CCDC60Q8IWA6 GTF2H4-202ENST00000376316 1673 ntAPPRIS P1 TSL 5 BASIC20.34■□□□□ 0.85
CCDC60Q8IWA6 FAM198A-202ENST00000430121 3121 ntAPPRIS P2 TSL 5 BASIC20.34■□□□□ 0.85
CCDC60Q8IWA6 SLC29A2-201ENST00000311161 2262 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
CCDC60Q8IWA6 C6orf136-203ENST00000376473 1402 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
CCDC60Q8IWA6 MRPL4-203ENST00000393733 1620 ntTSL 5 BASIC20.34■□□□□ 0.85
CCDC60Q8IWA6 UBE2I-207ENST00000406620 1842 ntAPPRIS P1 TSL 2 BASIC20.34■□□□□ 0.85
CCDC60Q8IWA6 TMEM79-203ENST00000405535 2201 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
CCDC60Q8IWA6 ARPC1B-201ENST00000252725 1551 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
CCDC60Q8IWA6 IGF2-207ENST00000434045 1583 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
CCDC60Q8IWA6 SIX5-201ENST00000317578 3318 ntAPPRIS P2 TSL 1 (best) BASIC20.33■□□□□ 0.85
CCDC60Q8IWA6 DRD5-201ENST00000304374 2330 ntAPPRIS P1 BASIC20.33■□□□□ 0.85
CCDC60Q8IWA6 CYP2A7-201ENST00000291764 2128 ntTSL 5 BASIC20.33■□□□□ 0.85
CCDC60Q8IWA6 XYLT2-203ENST00000507602 2107 ntTSL 2 BASIC20.33■□□□□ 0.85
CCDC60Q8IWA6 CACNA1A-218ENST00000635895 8657 ntAPPRIS ALT2 TSL 5 BASIC20.33■□□□□ 0.85
CCDC60Q8IWA6 CACNA1A-257ENST00000638009 8665 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.85
CCDC60Q8IWA6 JKAMP-201ENST00000261247 1726 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
CCDC60Q8IWA6 PSTK-201ENST00000368887 1705 ntAPPRIS P2 TSL 1 (best) BASIC20.33■□□□□ 0.85
CCDC60Q8IWA6 HOXA9-201ENST00000343483 2060 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
CCDC60Q8IWA6 IFNLR1-205ENST00000374421 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.85
CCDC60Q8IWA6 NFATC4-228ENST00000556759 2025 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
CCDC60Q8IWA6 LRRC27-201ENST00000344079 1809 ntAPPRIS ALT2 TSL 2 BASIC20.33■□□□□ 0.85
CCDC60Q8IWA6 SNRPA1-201ENST00000254193 1055 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
CCDC60Q8IWA6 NFIB-201ENST00000380921 1274 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
CCDC60Q8IWA6 RPUSD3-201ENST00000383820 1225 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
CCDC60Q8IWA6 GGT1-204ENST00000401885 968 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
CCDC60Q8IWA6 SDHD-206ENST00000528182 754 ntTSL 3 BASIC20.33■□□□□ 0.85
CCDC60Q8IWA6 KLK12-205ENST00000529888 735 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
CCDC60Q8IWA6 PNN-202ENST00000553331 656 ntTSL 3 BASIC20.33■□□□□ 0.85
CCDC60Q8IWA6 GXYLT1P4-201ENST00000613576 1192 ntBASIC20.33■□□□□ 0.85
CCDC60Q8IWA6 ARHGEF2-204ENST00000368315 1645 ntTSL 5 BASIC20.33■□□□□ 0.84
CCDC60Q8IWA6 LINC00167-201ENST00000530583 1419 ntBASIC20.33■□□□□ 0.84
CCDC60Q8IWA6 ZBTB48-202ENST00000377674 2293 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
CCDC60Q8IWA6 ACHE-205ENST00000419336 1906 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
CCDC60Q8IWA6 CIDEB-202ENST00000336557 2409 ntAPPRIS P1 TSL 2 BASIC20.33■□□□□ 0.84
CCDC60Q8IWA6 RABL2B-205ENST00000395595 2428 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.84
CCDC60Q8IWA6 ISL2-201ENST00000290759 1881 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
CCDC60Q8IWA6 ARMC6-202ENST00000392335 2383 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CCDC60Q8IWA6 MSC-201ENST00000325509 2023 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CCDC60Q8IWA6 PRR5-ARHGAP8-201ENST00000352766 2043 ntAPPRIS P1 TSL 2 BASIC20.32■□□□□ 0.84
CCDC60Q8IWA6 ASB6-202ENST00000277459 2180 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
CCDC60Q8IWA6 FIP1L1-202ENST00000337488 2198 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
CCDC60Q8IWA6 TTYH3-201ENST00000258796 4840 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CCDC60Q8IWA6 TMEM53-202ENST00000372237 2310 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CCDC60Q8IWA6 RETREG2-203ENST00000430297 4618 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CCDC60Q8IWA6 RPS6KA1-203ENST00000374166 3131 ntTSL 5 BASIC20.32■□□□□ 0.84
CCDC60Q8IWA6 HCCS-201ENST00000321143 2277 ntAPPRIS P1 TSL 2 BASIC20.32■□□□□ 0.84
CCDC60Q8IWA6 SLX1A-202ENST00000345535 762 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
CCDC60Q8IWA6 SLX1B-202ENST00000351581 762 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
CCDC60Q8IWA6 AC093585.1-201ENST00000425183 428 ntTSL 2 BASIC20.32■□□□□ 0.84
CCDC60Q8IWA6 NUS1P1-201ENST00000446295 882 ntBASIC20.32■□□□□ 0.84
CCDC60Q8IWA6 PHGR1-201ENST00000448599 436 ntAPPRIS P1 TSL 5 BASIC20.32■□□□□ 0.84
CCDC60Q8IWA6 TMEM41B-203ENST00000527813 803 ntTSL 5 BASIC20.32■□□□□ 0.84
CCDC60Q8IWA6 AC074051.2-201ENST00000565115 352 ntBASIC20.32■□□□□ 0.84
CCDC60Q8IWA6 ZNF688-207ENST00000567855 540 ntTSL 2 BASIC20.32■□□□□ 0.84
CCDC60Q8IWA6 ANAPC11-204ENST00000571024 668 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CCDC60Q8IWA6 ANAPC11-218ENST00000582222 523 ntTSL 2 BASIC20.32■□□□□ 0.84
CCDC60Q8IWA6 ASF1B-205ENST00000592798 769 ntTSL 2 BASIC20.32■□□□□ 0.84
CCDC60Q8IWA6 AL513523.2-201ENST00000633218 660 ntTSL 3 BASIC20.32■□□□□ 0.84
CCDC60Q8IWA6 PCOLCE-AS1-201ENST00000442166 2537 ntTSL 2 BASIC20.32■□□□□ 0.84
CCDC60Q8IWA6 CRYL1-202ENST00000382812 1581 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
CCDC60Q8IWA6 ATPIF1-202ENST00000465645 1855 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
CCDC60Q8IWA6 TEX13A-201ENST00000600991 1377 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CCDC60Q8IWA6 USF2-202ENST00000343550 1523 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
CCDC60Q8IWA6 CIAO1-203ENST00000488633 1533 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CCDC60Q8IWA6 STAC3-201ENST00000332782 1656 ntAPPRIS P1 TSL 2 BASIC20.32■□□□□ 0.84
CCDC60Q8IWA6 KRT9-201ENST00000246662 2290 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CCDC60Q8IWA6 SENP6-201ENST00000327284 2700 ntTSL 2 BASIC20.32■□□□□ 0.84
CCDC60Q8IWA6 OBSL1-204ENST00000404537 5841 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
CCDC60Q8IWA6 EHBP1-209ENST00000431489 5076 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
CCDC60Q8IWA6 AC093503.3-201ENST00000624917 2352 ntBASIC20.31■□□□□ 0.84
CCDC60Q8IWA6 DKK1-201ENST00000373970 1790 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 28.2 ms