Protein–RNA interactions for Protein: Q70EL1

USP54, Inactive ubiquitin carboxyl-terminal hydrolase 54, humanhuman

Predictions only

Length 1,684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP54Q70EL1 ZNF772-206ENST00000600175 737 ntTSL 2 BASIC24.37■■□□□ 1.49
USP54Q70EL1 GAS7-205ENST00000542249 1799 ntTSL 1 (best) BASIC24.36■■□□□ 1.49
USP54Q70EL1 DPF3-204ENST00000546183 1514 ntTSL 2 BASIC24.36■■□□□ 1.49
USP54Q70EL1 RUSC1-214ENST00000490373 1700 ntTSL 1 (best) BASIC24.36■■□□□ 1.49
USP54Q70EL1 CHTF8-203ENST00000448552 2903 ntAPPRIS P1 TSL 1 (best) BASIC24.36■■□□□ 1.49
USP54Q70EL1 FAM193B-217ENST00000514747 2913 ntAPPRIS P1 TSL 5 BASIC24.36■■□□□ 1.49
USP54Q70EL1 DHRS12-201ENST00000218981 1970 ntTSL 2 BASIC24.36■■□□□ 1.49
USP54Q70EL1 REEP4-202ENST00000334530 1476 ntTSL 1 (best) BASIC24.36■■□□□ 1.49
USP54Q70EL1 AC062028.1-203ENST00000447433 1472 ntTSL 1 (best) BASIC24.36■■□□□ 1.49
USP54Q70EL1 ACVRL1-202ENST00000419526 1356 ntTSL 2 BASIC24.36■■□□□ 1.49
USP54Q70EL1 PTH2-201ENST00000270631 459 ntAPPRIS P1 TSL 1 (best) BASIC24.36■■□□□ 1.49
USP54Q70EL1 VSTM1-201ENST00000338372 1023 ntAPPRIS P3 TSL 1 (best) BASIC24.36■■□□□ 1.49
USP54Q70EL1 ZFAND2B-207ENST00000409412 569 ntTSL 2 BASIC24.36■■□□□ 1.49
USP54Q70EL1 LRRC28-210ENST00000558879 581 ntTSL 4 BASIC24.36■■□□□ 1.49
USP54Q70EL1 AXIN2-208ENST00000611991 1019 ntTSL 5 BASIC24.36■■□□□ 1.49
USP54Q70EL1 RASGRP2-211ENST00000394432 2304 ntAPPRIS P2 TSL 1 (best) BASIC24.36■■□□□ 1.49
USP54Q70EL1 ERI1-203ENST00000519292 2107 ntAPPRIS P1 TSL 2 BASIC24.36■■□□□ 1.49
USP54Q70EL1 SAV1-201ENST00000324679 3063 ntAPPRIS P1 TSL 1 (best) BASIC24.36■■□□□ 1.49
USP54Q70EL1 PLAUR-201ENST00000221264 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC24.36■■□□□ 1.49
USP54Q70EL1 TRIM3-202ENST00000359518 3042 ntAPPRIS P1 TSL 5 BASIC24.35■■□□□ 1.49
USP54Q70EL1 ACD-202ENST00000393919 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC24.35■■□□□ 1.49
USP54Q70EL1 LAD1-202ENST00000391967 2906 ntTSL 1 (best) BASIC24.35■■□□□ 1.49
USP54Q70EL1 HSPB1-201ENST00000248553 909 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
USP54Q70EL1 UXT-202ENST00000335890 701 ntTSL 1 (best) BASIC24.35■■□□□ 1.49
USP54Q70EL1 QRFP-201ENST00000343079 411 ntAPPRIS P1 BASIC24.35■■□□□ 1.49
USP54Q70EL1 MSRB1-202ENST00000399753 847 ntTSL 3 BASIC24.35■■□□□ 1.49
USP54Q70EL1 PRR29-203ENST00000425164 1266 ntTSL 2 BASIC24.35■■□□□ 1.49
USP54Q70EL1 AC132008.2-207ENST00000454517 770 ntBASIC24.35■■□□□ 1.49
USP54Q70EL1 H2AFJ-203ENST00000544848 644 ntAPPRIS P1 BASIC24.35■■□□□ 1.49
USP54Q70EL1 CD63-204ENST00000546939 779 ntTSL 3 BASIC24.35■■□□□ 1.49
USP54Q70EL1 RPL27-206ENST00000589913 697 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
USP54Q70EL1 AC008735.5-201ENST00000623544 497 ntBASIC24.35■■□□□ 1.49
USP54Q70EL1 AC117500.6-201ENST00000624871 588 ntBASIC24.35■■□□□ 1.49
USP54Q70EL1 KLF6-204ENST00000469435 2169 ntTSL 1 (best) BASIC24.35■■□□□ 1.49
USP54Q70EL1 AP003717.1-202ENST00000537019 1412 ntTSL 5 BASIC24.35■■□□□ 1.49
USP54Q70EL1 TMEM216-201ENST00000334888 1306 ntAPPRIS ALT2 TSL 2 BASIC24.35■■□□□ 1.49
USP54Q70EL1 LINC01356-201ENST00000401018 1819 ntTSL 2 BASIC24.35■■□□□ 1.49
USP54Q70EL1 PDCD10-201ENST00000392750 2067 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
USP54Q70EL1 AMZ2-203ENST00000392720 1378 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
USP54Q70EL1 NARFL-201ENST00000251588 2112 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
USP54Q70EL1 DPM3-201ENST00000341298 486 ntAPPRIS P1 TSL 2 BASIC24.34■■□□□ 1.49
USP54Q70EL1 IFRD2-202ENST00000417626 2109 ntTSL 1 (best) BASIC24.34■■□□□ 1.49
USP54Q70EL1 AFG3L1P-210ENST00000431757 569 ntTSL 4 BASIC24.34■■□□□ 1.49
USP54Q70EL1 AC098831.1-202ENST00000438821 336 ntBASIC24.34■■□□□ 1.49
USP54Q70EL1 SDR39U1-202ENST00000538105 1041 ntTSL 2 BASIC24.34■■□□□ 1.49
USP54Q70EL1 ARAP1-AS1-201ENST00000542022 388 ntTSL 5 BASIC24.34■■□□□ 1.49
USP54Q70EL1 GSEC-201ENST00000626810 2289 ntTSL 2 BASIC24.34■■□□□ 1.49
USP54Q70EL1 RPL13P5-202ENST00000412023 1438 ntTSL 2 BASIC24.34■■□□□ 1.49
USP54Q70EL1 ABHD11-205ENST00000437775 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC24.34■■□□□ 1.49
USP54Q70EL1 SIGIRR-202ENST00000397632 1598 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
USP54Q70EL1 BRAF-201ENST00000288602 2480 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
USP54Q70EL1 SYNE4-201ENST00000324444 1354 ntAPPRIS P3 TSL 5 BASIC24.34■■□□□ 1.49
USP54Q70EL1 SDC1-203ENST00000403076 1523 ntTSL 1 (best) BASIC24.34■■□□□ 1.49
USP54Q70EL1 AC135776.2-201ENST00000567803 714 ntTSL 4 BASIC24.34■■□□□ 1.49
USP54Q70EL1 ARMC7-203ENST00000581078 1002 ntTSL 2 BASIC24.34■■□□□ 1.49
USP54Q70EL1 RAB34-226ENST00000636772 1180 ntTSL 5 BASIC24.34■■□□□ 1.49
USP54Q70EL1 RELT-202ENST00000393580 2669 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
USP54Q70EL1 AP3S1-201ENST00000316788 1730 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
USP54Q70EL1 FAM110A-203ENST00000381939 1737 ntAPPRIS P1 TSL 3 BASIC24.33■■□□□ 1.49
USP54Q70EL1 PML-205ENST00000395132 1738 ntTSL 1 (best) BASIC24.33■■□□□ 1.49
USP54Q70EL1 ATPIF1-202ENST00000465645 1855 ntTSL 1 (best) BASIC24.33■■□□□ 1.49
USP54Q70EL1 AC104581.1-201ENST00000324348 2852 ntAPPRIS P1 TSL 2 BASIC24.33■■□□□ 1.49
USP54Q70EL1 CHEK2-202ENST00000348295 1771 ntTSL 5 BASIC24.33■■□□□ 1.49
USP54Q70EL1 FAM76B-204ENST00000536839 2546 ntAPPRIS ALT1 TSL 5 BASIC24.33■■□□□ 1.49
USP54Q70EL1 PCCB-207ENST00000466072 1844 ntAPPRIS ALT2 TSL 3 BASIC24.33■■□□□ 1.49
USP54Q70EL1 PAIP1-201ENST00000306846 2782 ntTSL 1 (best) BASIC24.33■■□□□ 1.49
USP54Q70EL1 ZAR1L-201ENST00000345108 1103 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
USP54Q70EL1 MSANTD3-201ENST00000374885 786 ntTSL 2 BASIC24.33■■□□□ 1.49
USP54Q70EL1 CCNL2-201ENST00000400809 2305 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
USP54Q70EL1 MROH1-202ENST00000423230 1712 ntTSL 1 (best) BASIC24.33■■□□□ 1.49
USP54Q70EL1 TSPY3-202ENST00000440483 414 ntTSL 5 BASIC24.33■■□□□ 1.49
USP54Q70EL1 AL807752.7-201ENST00000471521 989 ntAPPRIS P1 TSL 5 BASIC24.33■■□□□ 1.49
USP54Q70EL1 UBXN1-210ENST00000529640 1110 ntAPPRIS ALT1 TSL 5 BASIC24.33■■□□□ 1.49
USP54Q70EL1 CCDC50-202ENST00000392456 2454 ntAPPRIS P4 TSL 1 (best) BASIC24.33■■□□□ 1.49
USP54Q70EL1 LINC00602-201ENST00000629776 2065 ntBASIC24.33■■□□□ 1.48
USP54Q70EL1 SEPT2-203ENST00000391971 3315 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.48
USP54Q70EL1 MBD1-208ENST00000398493 1845 ntTSL 5 BASIC24.32■■□□□ 1.48
USP54Q70EL1 FADS1-204ENST00000433932 1690 ntTSL 2 BASIC24.32■■□□□ 1.48
USP54Q70EL1 SIGLEC14-201ENST00000360844 2035 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
USP54Q70EL1 CTSA-201ENST00000191018 1898 ntTSL 1 (best) BASIC24.32■■□□□ 1.48
USP54Q70EL1 SPNS1-201ENST00000311008 2208 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
USP54Q70EL1 AC096633.1-201ENST00000422446 749 ntBASIC24.32■■□□□ 1.48
USP54Q70EL1 TCTN1-223ENST00000550703 2149 ntTSL 2 BASIC24.32■■□□□ 1.48
USP54Q70EL1 ANAPC11-210ENST00000574924 722 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
USP54Q70EL1 MKNK2-212ENST00000591588 631 ntTSL 2 BASIC24.32■■□□□ 1.48
USP54Q70EL1 LCE1E-203ENST00000619588 267 ntAPPRIS ALT2 TSL 5 BASIC24.32■■□□□ 1.48
USP54Q70EL1 AC073592.4-201ENST00000623827 446 ntBASIC24.32■■□□□ 1.48
USP54Q70EL1 AC079776.2-201ENST00000641154 1609 ntBASIC24.32■■□□□ 1.48
USP54Q70EL1 PLD3-205ENST00000409419 1966 ntAPPRIS P1 TSL 5 BASIC24.32■■□□□ 1.48
USP54Q70EL1 B3GNT3-202ENST00000595387 1349 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
USP54Q70EL1 TFAP4-201ENST00000204517 2215 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
USP54Q70EL1 SYT15-201ENST00000374321 1369 ntAPPRIS P4 TSL 2 BASIC24.32■■□□□ 1.48
USP54Q70EL1 WDR45-206ENST00000376368 1381 ntTSL 1 (best) BASIC24.32■■□□□ 1.48
USP54Q70EL1 EHMT1-204ENST00000462484 2707 ntTSL 1 (best) BASIC24.31■■□□□ 1.48
USP54Q70EL1 DMRT2-205ENST00000382255 2367 ntTSL 1 (best) BASIC24.31■■□□□ 1.48
USP54Q70EL1 NRP2-206ENST00000417189 2386 ntTSL 2 BASIC24.31■■□□□ 1.48
USP54Q70EL1 FDXR-214ENST00000581530 1827 ntAPPRIS P3 TSL 1 (best) BASIC24.31■■□□□ 1.48
USP54Q70EL1 ELOF1-201ENST00000252445 1019 ntAPPRIS P1 TSL 2 BASIC24.31■■□□□ 1.48
USP54Q70EL1 RAB17-203ENST00000409576 466 ntTSL 3 BASIC24.31■■□□□ 1.48
USP54Q70EL1 PIN1-206ENST00000587625 878 ntTSL 2 BASIC24.31■■□□□ 1.48
Retrieved 100 of 98,524 protein–RNA pairs in 56 ms