Protein–RNA interactions for Protein: Q6ZNA4

RNF111, E3 ubiquitin-protein ligase Arkadia, humanhuman

Predictions only

Length 994 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF111Q6ZNA4 NBL1-210ENST00000615215 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
RNF111Q6ZNA4 FTCDNL1-204ENST00000622774 1997 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
RNF111Q6ZNA4 ANXA8L1-203ENST00000613703 1874 ntTSL 2 BASIC17.84■□□□□ 0.45
RNF111Q6ZNA4 ADAMTS19-201ENST00000274487 5234 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
RNF111Q6ZNA4 NFATC2IP-201ENST00000320805 4569 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
RNF111Q6ZNA4 C1orf210-202ENST00000523677 1478 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
RNF111Q6ZNA4 SPATA18-202ENST00000419395 2816 ntTSL 2 BASIC17.84■□□□□ 0.45
RNF111Q6ZNA4 LRRC23-207ENST00000433346 1387 ntTSL 5 BASIC17.84■□□□□ 0.45
RNF111Q6ZNA4 DAB1-202ENST00000371230 1150 ntTSL 5 BASIC17.84■□□□□ 0.45
RNF111Q6ZNA4 MESTP1-201ENST00000404287 994 ntBASIC17.84■□□□□ 0.45
RNF111Q6ZNA4 HDAC11-205ENST00000404548 577 ntTSL 4 BASIC17.84■□□□□ 0.45
RNF111Q6ZNA4 BX322234.1-201ENST00000444188 980 ntTSL 3 BASIC17.84■□□□□ 0.45
RNF111Q6ZNA4 PACRGL-207ENST00000502938 810 ntTSL 4 BASIC17.84■□□□□ 0.45
RNF111Q6ZNA4 KCTD10-211ENST00000540411 866 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
RNF111Q6ZNA4 ADGRD1-AS1-202ENST00000542980 1277 ntTSL 4 BASIC17.84■□□□□ 0.45
RNF111Q6ZNA4 AL031600.3-201ENST00000566287 1124 ntTSL 5 BASIC17.84■□□□□ 0.45
RNF111Q6ZNA4 C16orf74-202ENST00000602583 1237 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
RNF111Q6ZNA4 DGCR10-201ENST00000609839 495 ntBASIC17.84■□□□□ 0.45
RNF111Q6ZNA4 AC130371.2-201ENST00000619443 611 ntBASIC17.84■□□□□ 0.45
RNF111Q6ZNA4 ATRIP-203ENST00000357105 2403 ntTSL 2 BASIC17.84■□□□□ 0.45
RNF111Q6ZNA4 ELN-207ENST00000380562 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
RNF111Q6ZNA4 DMPK-201ENST00000291270 2787 ntAPPRIS P3 TSL 5 BASIC17.84■□□□□ 0.45
RNF111Q6ZNA4 KCNQ5-212ENST00000628967 3527 ntTSL 2 BASIC17.84■□□□□ 0.45
RNF111Q6ZNA4 EWSR1-222ENST00000629659 2446 ntTSL 5 BASIC17.83■□□□□ 0.45
RNF111Q6ZNA4 PCDH1-201ENST00000287008 4793 ntAPPRIS P3 TSL 5 BASIC17.83■□□□□ 0.45
RNF111Q6ZNA4 DIDO1-203ENST00000370366 2383 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
RNF111Q6ZNA4 TPD52-211ENST00000519303 1594 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
RNF111Q6ZNA4 KLHL24-201ENST00000242810 2345 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
RNF111Q6ZNA4 ACAA1-201ENST00000301810 1540 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
RNF111Q6ZNA4 TMEM25-203ENST00000354284 1456 ntTSL 2 BASIC17.83■□□□□ 0.45
RNF111Q6ZNA4 LRRC20-203ENST00000358141 2924 ntTSL 2 BASIC17.83■□□□□ 0.45
RNF111Q6ZNA4 PCDHGC5-202ENST00000610789 2763 ntAPPRIS ALT2 BASIC17.83■□□□□ 0.45
RNF111Q6ZNA4 MYB-205ENST00000367814 3302 ntAPPRIS P3 TSL 1 (best) BASIC17.83■□□□□ 0.44
RNF111Q6ZNA4 FNBP1-201ENST00000355681 1977 ntTSL 2 BASIC17.83■□□□□ 0.44
RNF111Q6ZNA4 UNC93B2-201ENST00000285383 730 ntBASIC17.83■□□□□ 0.44
RNF111Q6ZNA4 AL162231.1-203ENST00000416454 465 ntAPPRIS ALT2 TSL 2 BASIC17.83■□□□□ 0.44
RNF111Q6ZNA4 ASPHD1-203ENST00000483405 1115 ntAPPRIS ALT2 TSL 3 BASIC17.83■□□□□ 0.44
RNF111Q6ZNA4 AC004803.1-203ENST00000539259 501 ntTSL 2 BASIC17.83■□□□□ 0.44
RNF111Q6ZNA4 AL355075.4-201ENST00000554988 638 ntBASIC17.83■□□□□ 0.44
RNF111Q6ZNA4 ZNF667-AS1-206ENST00000591797 535 ntTSL 5 BASIC17.83■□□□□ 0.44
RNF111Q6ZNA4 PARP12-201ENST00000263549 3796 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
RNF111Q6ZNA4 RABL6-203ENST00000371663 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.44
RNF111Q6ZNA4 SCARB1-208ENST00000544327 1812 ntTSL 5 BASIC17.83■□□□□ 0.44
RNF111Q6ZNA4 ACSS2-201ENST00000253382 2925 ntTSL 2 BASIC17.83■□□□□ 0.44
RNF111Q6ZNA4 RELA-226ENST00000612991 2266 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
RNF111Q6ZNA4 ASNS-206ENST00000437628 1638 ntTSL 2 BASIC17.83■□□□□ 0.44
RNF111Q6ZNA4 AC022211.2-201ENST00000585075 2527 ntBASIC17.82■□□□□ 0.44
RNF111Q6ZNA4 ALAS2-203ENST00000396198 1936 ntTSL 5 BASIC17.82■□□□□ 0.44
RNF111Q6ZNA4 ARHGEF18-202ENST00000359920 5733 ntAPPRIS ALT2 TSL 2 BASIC17.82■□□□□ 0.44
RNF111Q6ZNA4 WWC3-201ENST00000380861 6647 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
RNF111Q6ZNA4 KIAA1522-201ENST00000294521 878 ntAPPRIS ALT2 TSL 2 BASIC17.82■□□□□ 0.44
RNF111Q6ZNA4 TLCD1-202ENST00000394933 784 ntTSL 2 BASIC17.82■□□□□ 0.44
RNF111Q6ZNA4 METTL21A-206ENST00000432416 869 ntTSL 3 BASIC17.82■□□□□ 0.44
RNF111Q6ZNA4 TSPY21P-201ENST00000433481 731 ntBASIC17.82■□□□□ 0.44
RNF111Q6ZNA4 DBNL-214ENST00000456905 1241 ntTSL 2 BASIC17.82■□□□□ 0.44
RNF111Q6ZNA4 GCFC2-207ENST00000470503 1066 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
RNF111Q6ZNA4 CDC42EP2-202ENST00000533419 1279 ntAPPRIS P1 TSL 3 BASIC17.82■□□□□ 0.44
RNF111Q6ZNA4 FOXN3-AS1-201ENST00000555562 1077 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
RNF111Q6ZNA4 SNX21-213ENST00000614929 587 ntTSL 5 BASIC17.82■□□□□ 0.44
RNF111Q6ZNA4 ACAP1-201ENST00000158762 2512 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
RNF111Q6ZNA4 ZSWIM5-201ENST00000359600 5819 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
RNF111Q6ZNA4 CADPS2-201ENST00000313070 6065 ntTSL 5 BASIC17.82■□□□□ 0.44
RNF111Q6ZNA4 WT1-201ENST00000332351 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
RNF111Q6ZNA4 TAPBP-233ENST00000426633 1888 ntAPPRIS P4 TSL 1 (best) BASIC17.82■□□□□ 0.44
RNF111Q6ZNA4 IL6R-208ENST00000622330 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
RNF111Q6ZNA4 KIAA1586-203ENST00000545356 2883 ntTSL 2 BASIC17.81■□□□□ 0.44
RNF111Q6ZNA4 TPD52L1-202ENST00000368388 2147 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
RNF111Q6ZNA4 CCDC112-205ENST00000506442 2145 ntAPPRIS ALT2 TSL 2 BASIC17.81■□□□□ 0.44
RNF111Q6ZNA4 GDPD5-214ENST00000533784 2441 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
RNF111Q6ZNA4 RNPS1-203ENST00000397086 2069 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
RNF111Q6ZNA4 AL139384.1-201ENST00000612143 3047 ntBASIC17.81■□□□□ 0.44
RNF111Q6ZNA4 TNIP1-208ENST00000520931 2680 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
RNF111Q6ZNA4 AC027031.2-201ENST00000521369 1318 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
RNF111Q6ZNA4 KLC2-201ENST00000316924 2990 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
RNF111Q6ZNA4 MCM7-203ENST00000354230 2975 ntTSL 2 BASIC17.81■□□□□ 0.44
RNF111Q6ZNA4 EXOC5-201ENST00000340918 2632 ntTSL 2 BASIC17.81■□□□□ 0.44
RNF111Q6ZNA4 RBCK1-215ENST00000640614 2599 ntTSL 5 BASIC17.81■□□□□ 0.44
RNF111Q6ZNA4 TSTD1-202ENST00000368023 574 ntAPPRIS ALT2 TSL 2 BASIC17.81■□□□□ 0.44
RNF111Q6ZNA4 DUSP23-203ENST00000368109 729 ntAPPRIS P1 TSL 2 BASIC17.81■□□□□ 0.44
RNF111Q6ZNA4 SLC25A6P5-201ENST00000435663 894 ntBASIC17.81■□□□□ 0.44
RNF111Q6ZNA4 RBM17P1-201ENST00000453646 1190 ntBASIC17.81■□□□□ 0.44
RNF111Q6ZNA4 LINC02256-201ENST00000561999 366 ntTSL 3 BASIC17.81■□□□□ 0.44
RNF111Q6ZNA4 CIRBP-217ENST00000588230 1013 ntTSL 5 BASIC17.81■□□□□ 0.44
RNF111Q6ZNA4 SMAGP-204ENST00000603838 816 ntTSL 2 BASIC17.81■□□□□ 0.44
RNF111Q6ZNA4 GRAMD4P8-201ENST00000605465 1115 ntBASIC17.81■□□□□ 0.44
RNF111Q6ZNA4 AC016737.2-201ENST00000609273 358 ntTSL 3 BASIC17.81■□□□□ 0.44
RNF111Q6ZNA4 AL590094.1-202ENST00000634619 1131 ntTSL 5 BASIC17.81■□□□□ 0.44
RNF111Q6ZNA4 ORAI2-202ENST00000403646 2528 ntAPPRIS P1 TSL 2 BASIC17.81■□□□□ 0.44
RNF111Q6ZNA4 SERGEF-201ENST00000265965 1566 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
RNF111Q6ZNA4 THOP1-205ENST00000586677 1872 ntTSL 2 BASIC17.81■□□□□ 0.44
RNF111Q6ZNA4 DUS1L-202ENST00000354321 2151 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
RNF111Q6ZNA4 HNRNPM-217ENST00000620401 2458 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
RNF111Q6ZNA4 PCSK7-201ENST00000320934 4649 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
RNF111Q6ZNA4 HEXIM2-201ENST00000307275 1528 ntAPPRIS P1 TSL 2 BASIC17.81■□□□□ 0.44
RNF111Q6ZNA4 IMMP2L-202ENST00000405709 1522 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
RNF111Q6ZNA4 YARS2-201ENST00000324868 2122 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
RNF111Q6ZNA4 PHF20L1-201ENST00000220847 3297 ntTSL 5 BASIC17.81■□□□□ 0.44
RNF111Q6ZNA4 FKBP10-201ENST00000321562 2662 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
RNF111Q6ZNA4 DHCR7-201ENST00000355527 2666 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
RNF111Q6ZNA4 P2RY6-201ENST00000349767 1700 ntAPPRIS P1 TSL 2 BASIC17.81■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 17.5 ms