Protein–RNA interactions for Protein: Q6P499

NIPAL3, NIPA-like protein 3, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NIPAL3Q6P499 NFKBIL1-201ENST00000376145 1401 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
NIPAL3Q6P499 TWIST2-202ENST00000612363 1404 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
NIPAL3Q6P499 AC020916.1-201ENST00000587762 1774 ntBASIC16.72■□□□□ 0.27
NIPAL3Q6P499 ATP2A2-201ENST00000308664 4453 ntAPPRIS ALT1 TSL 1 (best) BASIC16.72■□□□□ 0.27
NIPAL3Q6P499 FBXO44-201ENST00000251546 1896 ntTSL 2 BASIC16.72■□□□□ 0.27
NIPAL3Q6P499 AC093677.2-201ENST00000600169 1863 ntBASIC16.72■□□□□ 0.27
NIPAL3Q6P499 FARP2-202ENST00000373287 2580 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
NIPAL3Q6P499 PTS-201ENST00000280362 935 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
NIPAL3Q6P499 KRT17P2-202ENST00000326333 1174 ntTSL 2 BASIC16.72■□□□□ 0.27
NIPAL3Q6P499 RABL2A-202ENST00000393165 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
NIPAL3Q6P499 AC009487.1-202ENST00000437683 402 ntTSL 2 BASIC16.72■□□□□ 0.27
NIPAL3Q6P499 GXYLT1P3-201ENST00000453058 1193 ntBASIC16.72■□□□□ 0.27
NIPAL3Q6P499 REPIN1-210ENST00000482680 1029 ntTSL 2 BASIC16.72■□□□□ 0.27
NIPAL3Q6P499 TMEM185A-204ENST00000507237 903 ntTSL 2 BASIC16.72■□□□□ 0.27
NIPAL3Q6P499 IGHMBP2-205ENST00000539224 785 ntTSL 3 BASIC16.72■□□□□ 0.27
NIPAL3Q6P499 AC116562.4-202ENST00000641738 218 ntBASIC16.72■□□□□ 0.27
NIPAL3Q6P499 BICRA-201ENST00000396720 5739 ntAPPRIS P2 TSL 5 BASIC16.72■□□□□ 0.27
NIPAL3Q6P499 PNMA6E-201ENST00000445091 2192 ntAPPRIS P1 TSL 2 BASIC16.72■□□□□ 0.27
NIPAL3Q6P499 STK11-201ENST00000326873 2611 ntAPPRIS P2 TSL 1 (best) BASIC16.72■□□□□ 0.27
NIPAL3Q6P499 ULK3-220ENST00000569437 2611 ntAPPRIS ALT1 TSL 1 (best) BASIC16.72■□□□□ 0.27
NIPAL3Q6P499 CENPA-202ENST00000335756 1452 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
NIPAL3Q6P499 TRAF4-201ENST00000262395 2923 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
NIPAL3Q6P499 MST1R-214ENST00000613534 2025 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
NIPAL3Q6P499 RNF169-201ENST00000299563 7823 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
NIPAL3Q6P499 MAN2A1-201ENST00000261483 4667 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
NIPAL3Q6P499 PHF1-201ENST00000374512 2224 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
NIPAL3Q6P499 THAP12-201ENST00000260045 3300 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
NIPAL3Q6P499 AC005865.2-201ENST00000505276 2303 ntTSL 2 BASIC16.71■□□□□ 0.27
NIPAL3Q6P499 TLK2-203ENST00000346027 3449 ntAPPRIS P3 TSL 1 (best) BASIC16.71■□□□□ 0.27
NIPAL3Q6P499 CALM2-201ENST00000272298 1302 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
NIPAL3Q6P499 TEX13A-202ENST00000609007 1349 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
NIPAL3Q6P499 ZNF500-202ENST00000545009 2440 ntTSL 2 BASIC16.71■□□□□ 0.27
NIPAL3Q6P499 IFNL4-203ENST00000634680 1421 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
NIPAL3Q6P499 CLYBL-203ENST00000376355 6771 ntAPPRIS P1 TSL 2 BASIC16.71■□□□□ 0.27
NIPAL3Q6P499 FRS3-201ENST00000259748 2094 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
NIPAL3Q6P499 SLC22A23-203ENST00000406686 5658 ntAPPRIS P2 TSL 5 BASIC16.71■□□□□ 0.27
NIPAL3Q6P499 HTATSF1-204ENST00000535601 3019 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
NIPAL3Q6P499 DCHS2-201ENST00000339452 5064 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
NIPAL3Q6P499 AC087500.1-202ENST00000571689 1715 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
NIPAL3Q6P499 CORO1C-204ENST00000541050 2487 ntAPPRIS P1 TSL 2 BASIC16.71■□□□□ 0.27
NIPAL3Q6P499 TRAPPC3-204ENST00000373166 1265 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
NIPAL3Q6P499 AL445685.1-201ENST00000425802 762 ntTSL 3 BASIC16.71■□□□□ 0.27
NIPAL3Q6P499 FBXO32-202ENST00000443022 1227 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
NIPAL3Q6P499 ZNF454-202ENST00000519564 2142 ntAPPRIS P1 TSL 2 BASIC16.71■□□□□ 0.27
NIPAL3Q6P499 ANK1-211ENST00000522231 1060 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
NIPAL3Q6P499 ANK1-212ENST00000522543 1160 ntTSL 2 BASIC16.71■□□□□ 0.27
NIPAL3Q6P499 SLC25A11-202ENST00000544061 952 ntTSL 3 BASIC16.71■□□□□ 0.27
NIPAL3Q6P499 FFAR4-203ENST00000604414 1142 ntTSL 3 BASIC16.71■□□□□ 0.27
NIPAL3Q6P499 AC008622.2-201ENST00000617006 1229 ntBASIC16.71■□□□□ 0.27
NIPAL3Q6P499 LINC00574-201ENST00000420557 2318 ntTSL 2 BASIC16.71■□□□□ 0.27
NIPAL3Q6P499 DAG1-220ENST00000539901 5665 ntAPPRIS P1 TSL 5 BASIC16.71■□□□□ 0.27
NIPAL3Q6P499 C19orf57-208ENST00000591586 1559 ntAPPRIS ALT2 TSL 5 BASIC16.71■□□□□ 0.27
NIPAL3Q6P499 CTSB-202ENST00000353047 3875 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
NIPAL3Q6P499 AC096719.1-201ENST00000510705 1874 ntTSL 5 BASIC16.71■□□□□ 0.27
NIPAL3Q6P499 RASL11B-201ENST00000248706 1995 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
NIPAL3Q6P499 PPAN-P2RY11-201ENST00000393796 2385 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.26
NIPAL3Q6P499 KCNC2-203ENST00000393288 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.26
NIPAL3Q6P499 CCDC157-203ENST00000405659 3052 ntAPPRIS P3 TSL 1 (best) BASIC16.71■□□□□ 0.26
NIPAL3Q6P499 NCOA6-207ENST00000616167 3271 ntAPPRIS ALT2 TSL 5 BASIC16.71■□□□□ 0.26
NIPAL3Q6P499 TTLL12-201ENST00000216129 3385 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.26
NIPAL3Q6P499 RCC2P3-201ENST00000418112 1537 ntBASIC16.7■□□□□ 0.26
NIPAL3Q6P499 C2CD2L-201ENST00000336702 4771 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
NIPAL3Q6P499 FDXR-202ENST00000413947 1809 ntTSL 2 BASIC16.7■□□□□ 0.26
NIPAL3Q6P499 PAQR6-201ENST00000292291 1908 ntAPPRIS P3 TSL 1 (best) BASIC16.7■□□□□ 0.26
NIPAL3Q6P499 TRIM50-201ENST00000333149 2047 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
NIPAL3Q6P499 SLC22A4-201ENST00000200652 2201 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
NIPAL3Q6P499 TRMT6-201ENST00000203001 2327 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
NIPAL3Q6P499 FAM131A-202ENST00000340957 2421 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
NIPAL3Q6P499 FAM124A-202ENST00000322475 4761 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
NIPAL3Q6P499 SLC43A1-201ENST00000278426 2598 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
NIPAL3Q6P499 USP39-201ENST00000323701 2177 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
NIPAL3Q6P499 AP001476.1-201ENST00000451618 2198 ntTSL 2 BASIC16.7■□□□□ 0.26
NIPAL3Q6P499 ADK-202ENST00000372734 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC16.7■□□□□ 0.26
NIPAL3Q6P499 KRT16P6-201ENST00000417510 1873 ntTSL 5 BASIC16.7■□□□□ 0.26
NIPAL3Q6P499 FLYWCH1P1-201ENST00000460917 1874 ntBASIC16.7■□□□□ 0.26
NIPAL3Q6P499 OLFM2-203ENST00000590841 1665 ntTSL 2 BASIC16.7■□□□□ 0.26
NIPAL3Q6P499 FZD1-201ENST00000287934 6963 ntAPPRIS P1 BASIC16.7■□□□□ 0.26
NIPAL3Q6P499 TPSB2-203ENST00000612142 1352 ntAPPRIS P5 TSL 1 (best) BASIC16.7■□□□□ 0.26
NIPAL3Q6P499 KRAS-201ENST00000256078 1119 ntAPPRIS P4 TSL 1 (best) BASIC16.7■□□□□ 0.26
NIPAL3Q6P499 AC087499.1-201ENST00000418141 1075 ntBASIC16.7■□□□□ 0.26
NIPAL3Q6P499 AL954642.1-201ENST00000428088 538 ntTSL 3 BASIC16.7■□□□□ 0.26
NIPAL3Q6P499 TSPY17P-201ENST00000450329 467 ntBASIC16.7■□□□□ 0.26
NIPAL3Q6P499 ABHD11-207ENST00000458339 890 ntTSL 3 BASIC16.7■□□□□ 0.26
NIPAL3Q6P499 MNX1-AS1-201ENST00000480284 1041 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
NIPAL3Q6P499 AC128688.1-201ENST00000487626 519 ntBASIC16.7■□□□□ 0.26
NIPAL3Q6P499 NCAM1-AS1-201ENST00000526229 1081 ntTSL 2 BASIC16.7■□□□□ 0.26
NIPAL3Q6P499 HRASLS5-205ENST00000539221 1167 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
NIPAL3Q6P499 PSMD9-208ENST00000542602 516 ntTSL 3 BASIC16.7■□□□□ 0.26
NIPAL3Q6P499 AC010947.1-201ENST00000623454 693 ntBASIC16.7■□□□□ 0.26
NIPAL3Q6P499 STIM2-202ENST00000465503 3613 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
NIPAL3Q6P499 FAM222A-201ENST00000358906 2731 ntAPPRIS P1 TSL 5 BASIC16.7■□□□□ 0.26
NIPAL3Q6P499 REPS1-202ENST00000367663 2607 ntAPPRIS ALT1 TSL 5 BASIC16.7■□□□□ 0.26
NIPAL3Q6P499 TTLL8-201ENST00000266182 2505 ntAPPRIS ALT2 TSL 5 BASIC16.7■□□□□ 0.26
NIPAL3Q6P499 T-201ENST00000296946 2436 ntAPPRIS P1 TSL 5 BASIC16.7■□□□□ 0.26
NIPAL3Q6P499 SNX17-201ENST00000233575 2044 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
NIPAL3Q6P499 ADAM15-207ENST00000368413 1901 ntTSL 5 BASIC16.7■□□□□ 0.26
NIPAL3Q6P499 EIF3B-201ENST00000360876 3055 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
NIPAL3Q6P499 TMEM214-201ENST00000238788 2990 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
NIPAL3Q6P499 CACNA1B-205ENST00000371363 9758 ntAPPRIS ALT2 TSL 5 BASIC16.7■□□□□ 0.26
NIPAL3Q6P499 AHCYL2-201ENST00000325006 5056 ntAPPRIS P3 TSL 1 (best) BASIC16.7■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 33.5 ms