Protein–RNA interactions for Protein: Q3LFD5

USP41, Putative ubiquitin carboxyl-terminal hydrolase 41, humanhuman

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP41Q3LFD5 SLC9A3R2-208ENST00000566198 1199 ntTSL 2 BASIC19.49■□□□□ 0.71
USP41Q3LFD5 CCNC-219ENST00000627680 896 ntTSL 5 BASIC19.49■□□□□ 0.71
USP41Q3LFD5 PTN-201ENST00000348225 1614 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
USP41Q3LFD5 PIANP-201ENST00000320591 2323 ntAPPRIS P3 TSL 1 (best) BASIC19.49■□□□□ 0.71
USP41Q3LFD5 OSM-201ENST00000215781 1854 ntAPPRIS P3 TSL 1 (best) BASIC19.49■□□□□ 0.71
USP41Q3LFD5 MEN1-208ENST00000394374 3155 ntAPPRIS P3 TSL 5 BASIC19.49■□□□□ 0.71
USP41Q3LFD5 CFC1-203ENST00000621673 1444 ntTSL 2 BASIC19.49■□□□□ 0.71
USP41Q3LFD5 AC005332.7-201ENST00000614046 2005 ntBASIC19.49■□□□□ 0.71
USP41Q3LFD5 TYMS-203ENST00000323274 1662 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
USP41Q3LFD5 ANKRD53-202ENST00000360589 1666 ntAPPRIS ALT2 TSL 2 BASIC19.49■□□□□ 0.71
USP41Q3LFD5 PTPA-223ENST00000452489 2526 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
USP41Q3LFD5 USP39-202ENST00000409025 1946 ntTSL 5 BASIC19.49■□□□□ 0.71
USP41Q3LFD5 SAMD11-213ENST00000618181 2179 ntAPPRIS ALT2 TSL 5 BASIC19.49■□□□□ 0.71
USP41Q3LFD5 BHLHE22-201ENST00000321870 3262 ntAPPRIS P1 BASIC19.49■□□□□ 0.71
USP41Q3LFD5 CDKN2C-201ENST00000262662 2904 ntAPPRIS P1 TSL 2 BASIC19.48■□□□□ 0.71
USP41Q3LFD5 PRR14-203ENST00000542965 2316 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
USP41Q3LFD5 CD81-AS1-201ENST00000413483 1460 ntTSL 2 BASIC19.48■□□□□ 0.71
USP41Q3LFD5 CEP55-201ENST00000371485 2638 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
USP41Q3LFD5 GPR75-201ENST00000394705 2115 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
USP41Q3LFD5 PDZD3-203ENST00000525131 1882 ntTSL 2 BASIC19.48■□□□□ 0.71
USP41Q3LFD5 UHRF1-203ENST00000615884 2651 ntAPPRIS P1 TSL 2 BASIC19.48■□□□□ 0.71
USP41Q3LFD5 GML-201ENST00000220940 723 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
USP41Q3LFD5 TNNC1-201ENST00000232975 714 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
USP41Q3LFD5 TCEAL2-201ENST00000329035 1080 ntAPPRIS P1 TSL 5 BASIC19.48■□□□□ 0.71
USP41Q3LFD5 AL133343.2-201ENST00000457213 370 ntTSL 3 BASIC19.48■□□□□ 0.71
USP41Q3LFD5 AC091607.1-201ENST00000490318 1060 ntBASIC19.48■□□□□ 0.71
USP41Q3LFD5 CDV3-207ENST00000508481 661 ntTSL 3 BASIC19.48■□□□□ 0.71
USP41Q3LFD5 NOP16-205ENST00000509257 1000 ntTSL 2 BASIC19.48■□□□□ 0.71
USP41Q3LFD5 COX6C-204ENST00000520271 571 ntAPPRIS P1 TSL 2 BASIC19.48■□□□□ 0.71
USP41Q3LFD5 TRPC2-202ENST00000526541 1189 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
USP41Q3LFD5 AC008735.1-201ENST00000592252 802 ntTSL 5 BASIC19.48■□□□□ 0.71
USP41Q3LFD5 COL13A1-205ENST00000398978 3093 ntAPPRIS P4 TSL 5 BASIC19.48■□□□□ 0.71
USP41Q3LFD5 AD000671.2-201ENST00000589807 1925 ntAPPRIS P1 TSL 2 BASIC19.48■□□□□ 0.71
USP41Q3LFD5 LRRC61-201ENST00000323078 1684 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
USP41Q3LFD5 ST3GAL4-205ENST00000449406 1669 ntTSL 5 BASIC19.48■□□□□ 0.71
USP41Q3LFD5 LRWD1-201ENST00000292616 2215 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
USP41Q3LFD5 ZNRF1-202ENST00000335325 4620 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
USP41Q3LFD5 C6orf141-206ENST00000529246 1450 ntAPPRIS P1 BASIC19.48■□□□□ 0.71
USP41Q3LFD5 EMB-204ENST00000508934 1617 ntAPPRIS ALT2 TSL 5 BASIC19.47■□□□□ 0.71
USP41Q3LFD5 CHRNB1-201ENST00000306071 2557 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
USP41Q3LFD5 ARNTL-203ENST00000403290 2746 ntAPPRIS ALT1 TSL 1 (best) BASIC19.47■□□□□ 0.71
USP41Q3LFD5 CDK13-202ENST00000340829 5066 ntAPPRIS ALT1 TSL 1 (best) BASIC19.47■□□□□ 0.71
USP41Q3LFD5 BRAF-201ENST00000288602 2480 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
USP41Q3LFD5 BUB3-201ENST00000368858 1361 ntAPPRIS ALT1 TSL 1 (best) BASIC19.47■□□□□ 0.71
USP41Q3LFD5 TRMT2A-203ENST00000404751 2498 ntAPPRIS ALT2 TSL 2 BASIC19.47■□□□□ 0.71
USP41Q3LFD5 GRM5-202ENST00000305447 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC19.47■□□□□ 0.71
USP41Q3LFD5 HAUS8-202ENST00000448593 1545 ntAPPRIS ALT2 TSL 5 BASIC19.47■□□□□ 0.71
USP41Q3LFD5 TRPV3-209ENST00000576742 2766 ntAPPRIS P3 TSL 1 (best) BASIC19.47■□□□□ 0.71
USP41Q3LFD5 P2RX5-203ENST00000547178 1998 ntAPPRIS ALT2 TSL 1 (best) BASIC19.47■□□□□ 0.71
USP41Q3LFD5 ID2-202ENST00000331129 623 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
USP41Q3LFD5 LCE1F-201ENST00000334371 357 ntAPPRIS P1 BASIC19.47■□□□□ 0.71
USP41Q3LFD5 ARMC12-202ENST00000373866 1254 ntAPPRIS P1 TSL 3 BASIC19.47■□□□□ 0.71
USP41Q3LFD5 C1QC-203ENST00000374640 1163 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
USP41Q3LFD5 DUSP15-204ENST00000398083 1212 ntTSL 5 BASIC19.47■□□□□ 0.71
USP41Q3LFD5 AC007952.1-201ENST00000399087 553 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
USP41Q3LFD5 AC007952.2-202ENST00000399093 556 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
USP41Q3LFD5 ENDOV-205ENST00000518644 625 ntTSL 4 BASIC19.47■□□□□ 0.71
USP41Q3LFD5 SIDT2-217ENST00000532062 2143 ntTSL 2 BASIC19.47■□□□□ 0.71
USP41Q3LFD5 AP001453.1-201ENST00000534988 923 ntTSL 3 BASIC19.47■□□□□ 0.71
USP41Q3LFD5 TRMT112-203ENST00000535750 823 ntTSL 2 BASIC19.47■□□□□ 0.71
USP41Q3LFD5 SDR39U1-202ENST00000538105 1041 ntTSL 2 BASIC19.47■□□□□ 0.71
USP41Q3LFD5 CTDNEP1-207ENST00000572043 857 ntTSL 3 BASIC19.47■□□□□ 0.71
USP41Q3LFD5 AC254629.1-202ENST00000618276 2112 ntTSL 2 BASIC19.47■□□□□ 0.71
USP41Q3LFD5 AC106017.2-202ENST00000628484 536 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
USP41Q3LFD5 ANKRD20A8P-203ENST00000641373 517 ntBASIC19.47■□□□□ 0.71
USP41Q3LFD5 DLGAP4-206ENST00000475894 3110 ntAPPRIS ALT2 TSL 2 BASIC19.47■□□□□ 0.71
USP41Q3LFD5 AC112777.1-201ENST00000540175 1423 ntBASIC19.47■□□□□ 0.71
USP41Q3LFD5 UROS-202ENST00000368778 1556 ntTSL 2 BASIC19.47■□□□□ 0.71
USP41Q3LFD5 OSMR-202ENST00000502536 1740 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
USP41Q3LFD5 SMPD1-201ENST00000342245 2452 ntAPPRIS ALT1 TSL 1 (best) BASIC19.47■□□□□ 0.71
USP41Q3LFD5 THAP3-203ENST00000377627 2053 ntAPPRIS P3 TSL 2 BASIC19.47■□□□□ 0.71
USP41Q3LFD5 SNAI3-AS1-205ENST00000568633 2096 ntBASIC19.47■□□□□ 0.71
USP41Q3LFD5 SHROOM1-202ENST00000378676 2352 ntAPPRIS ALT2 TSL 5 BASIC19.47■□□□□ 0.71
USP41Q3LFD5 EGLN2-201ENST00000303961 2102 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
USP41Q3LFD5 MYBPH-201ENST00000255416 1805 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
USP41Q3LFD5 KRT13-201ENST00000246635 1699 ntAPPRIS P4 TSL 1 (best) BASIC19.46■□□□□ 0.71
USP41Q3LFD5 RBFOX1-204ENST00000422070 1684 ntTSL 2 BASIC19.46■□□□□ 0.71
USP41Q3LFD5 MYLKP1-201ENST00000509077 1580 ntBASIC19.46■□□□□ 0.71
USP41Q3LFD5 VSTM2A-203ENST00000404951 2521 ntTSL 5 BASIC19.46■□□□□ 0.71
USP41Q3LFD5 CABP4-202ENST00000438189 1426 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
USP41Q3LFD5 TNFAIP3-207ENST00000614035 1430 ntTSL 5 BASIC19.46■□□□□ 0.71
USP41Q3LFD5 PRMT2-201ENST00000291705 1011 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
USP41Q3LFD5 SUSD4-203ENST00000344029 1056 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
USP41Q3LFD5 C1orf43-204ENST00000368518 1278 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
USP41Q3LFD5 EDN3-203ENST00000371025 1153 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
USP41Q3LFD5 IGF2-202ENST00000381392 1005 ntAPPRIS ALT1 TSL 1 (best) BASIC19.46■□□□□ 0.71
USP41Q3LFD5 NUS1P2-201ENST00000417358 873 ntBASIC19.46■□□□□ 0.71
USP41Q3LFD5 POM121L3P-201ENST00000419331 1163 ntBASIC19.46■□□□□ 0.71
USP41Q3LFD5 AC080075.1-201ENST00000469747 427 ntTSL 2 BASIC19.46■□□□□ 0.71
USP41Q3LFD5 AC008610.1-201ENST00000504573 393 ntTSL 2 BASIC19.46■□□□□ 0.71
USP41Q3LFD5 AL121912.1-201ENST00000603683 238 ntBASIC19.46■□□□□ 0.71
USP41Q3LFD5 IRF7-203ENST00000397566 2051 ntAPPRIS P4 TSL 1 (best) BASIC19.46■□□□□ 0.71
USP41Q3LFD5 HOOK1-201ENST00000371208 5857 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
USP41Q3LFD5 LAPTM4B-204ENST00000619747 2758 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
USP41Q3LFD5 DAPK2-205ENST00000558069 1473 ntTSL 5 BASIC19.46■□□□□ 0.71
USP41Q3LFD5 CEP78-202ENST00000376597 2618 ntAPPRIS P4 TSL 1 (best) BASIC19.46■□□□□ 0.71
USP41Q3LFD5 GLYCTK-202ENST00000436784 1982 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
USP41Q3LFD5 CWH43-201ENST00000226432 2472 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
USP41Q3LFD5 CCT6P1-202ENST00000442266 1317 ntTSL 2 BASIC19.46■□□□□ 0.71
USP41Q3LFD5 MSC-201ENST00000325509 2023 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 37.4 ms