Protein–RNA interactions for Protein: Q02388

COL7A1, Collagen alpha-1(VII) chain, humanhuman

Predictions only

Length 2,944 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1Q02388 GNAI1-201ENST00000351004 3347 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
COL7A1Q02388 TPD52-211ENST00000519303 1594 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
COL7A1Q02388 PNOC-201ENST00000301908 1200 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
COL7A1Q02388 AC007952.1-201ENST00000399087 553 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
COL7A1Q02388 AC007952.2-202ENST00000399093 556 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
COL7A1Q02388 AL022316.1-201ENST00000428765 572 ntTSL 4 BASIC13.08□□□□□ -0.32
COL7A1Q02388 MKNK2P1-201ENST00000437526 628 ntBASIC13.08□□□□□ -0.32
COL7A1Q02388 TWIST2-201ENST00000448943 1176 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
COL7A1Q02388 AC124067.2-201ENST00000521989 510 ntTSL 2 BASIC13.08□□□□□ -0.32
COL7A1Q02388 AC068389.2-201ENST00000529518 430 ntTSL 2 BASIC13.08□□□□□ -0.32
COL7A1Q02388 SNHG9-202ENST00000564014 471 ntBASIC13.08□□□□□ -0.32
COL7A1Q02388 PPP1R14A-203ENST00000587515 607 ntTSL 2 BASIC13.08□□□□□ -0.32
COL7A1Q02388 ZNF773-202ENST00000593916 548 ntTSL 3 BASIC13.08□□□□□ -0.32
COL7A1Q02388 AC106017.2-202ENST00000628484 536 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
COL7A1Q02388 AC107959.1-202ENST00000502083 1945 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
COL7A1Q02388 DIO3OS-212ENST00000557661 1937 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
COL7A1Q02388 PLD4-204ENST00000540372 2007 ntAPPRIS ALT2 TSL 2 BASIC13.08□□□□□ -0.32
COL7A1Q02388 BAIAP2L2-202ENST00000381669 2146 ntAPPRIS P2 TSL 1 (best) BASIC13.07□□□□□ -0.32
COL7A1Q02388 NRL-206ENST00000561028 2103 ntAPPRIS P1 TSL 2 BASIC13.07□□□□□ -0.32
COL7A1Q02388 HSD11B1L-223ENST00000616276 1580 ntAPPRIS ALT2 TSL 5 BASIC13.07□□□□□ -0.32
COL7A1Q02388 C2orf81-201ENST00000290390 2227 ntAPPRIS P5 TSL 5 BASIC13.07□□□□□ -0.32
COL7A1Q02388 ZNF346-201ENST00000358149 2314 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
COL7A1Q02388 NFE2L1-204ENST00000536222 2172 ntTSL 2 BASIC13.07□□□□□ -0.32
COL7A1Q02388 AC016065.1-201ENST00000500118 2413 ntTSL 2 BASIC13.07□□□□□ -0.32
COL7A1Q02388 GGT1-207ENST00000404532 853 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
COL7A1Q02388 AC026191.1-201ENST00000491930 829 ntTSL 3 BASIC13.07□□□□□ -0.32
COL7A1Q02388 AC008610.1-201ENST00000504573 393 ntTSL 2 BASIC13.07□□□□□ -0.32
COL7A1Q02388 RNASEK-207ENST00000552842 595 ntTSL 3 BASIC13.07□□□□□ -0.32
COL7A1Q02388 C1QTNF1-212ENST00000583904 1129 ntAPPRIS P1 TSL 4 BASIC13.07□□□□□ -0.32
COL7A1Q02388 STARD7-AS1-202ENST00000446816 1527 ntTSL 2 BASIC13.07□□□□□ -0.32
COL7A1Q02388 AMZ2-203ENST00000392720 1378 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
COL7A1Q02388 GPX3-209ENST00000614343 1478 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
COL7A1Q02388 GSN-204ENST00000373818 2657 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
COL7A1Q02388 ABHD5-205ENST00000458276 1690 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
COL7A1Q02388 C19orf25-201ENST00000427685 1410 ntTSL 2 BASIC13.07□□□□□ -0.32
COL7A1Q02388 BACE1-204ENST00000445823 1408 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
COL7A1Q02388 CRELD1-206ENST00000452070 1778 ntAPPRIS P1 TSL 2 BASIC13.07□□□□□ -0.32
COL7A1Q02388 GAS7-205ENST00000542249 1799 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
COL7A1Q02388 RIPK2-201ENST00000220751 2584 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
COL7A1Q02388 TRIM3-202ENST00000359518 3042 ntAPPRIS P1 TSL 5 BASIC13.07□□□□□ -0.32
COL7A1Q02388 PHF19-201ENST00000312189 836 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
COL7A1Q02388 CRADD-201ENST00000332896 1169 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
COL7A1Q02388 FAM24B-201ENST00000368896 704 ntAPPRIS P1 TSL 2 BASIC13.07□□□□□ -0.32
COL7A1Q02388 IQCF3-204ENST00000446775 1241 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
COL7A1Q02388 DDIT4-AS1-201ENST00000491934 847 ntTSL 5 BASIC13.07□□□□□ -0.32
COL7A1Q02388 FAU-209ENST00000531743 697 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
COL7A1Q02388 ETFA-208ENST00000559602 792 ntTSL 3 BASIC13.07□□□□□ -0.32
COL7A1Q02388 CRB3-204ENST00000600229 1078 ntAPPRIS ALT2 TSL 2 BASIC13.07□□□□□ -0.32
COL7A1Q02388 ZNF771-201ENST00000319296 2371 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
COL7A1Q02388 MSL1-206ENST00000579565 1401 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
COL7A1Q02388 HS3ST4-201ENST00000331351 3203 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
COL7A1Q02388 RPS17-201ENST00000330244 592 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
COL7A1Q02388 AQP12A-201ENST00000337801 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC13.06□□□□□ -0.32
COL7A1Q02388 ADARB2-201ENST00000381305 703 ntTSL 2 BASIC13.06□□□□□ -0.32
COL7A1Q02388 HNF4A-208ENST00000609795 1192 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
COL7A1Q02388 AC073592.4-201ENST00000623827 446 ntBASIC13.06□□□□□ -0.32
COL7A1Q02388 C16orf70-208ENST00000569600 1353 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
COL7A1Q02388 ICAM5-201ENST00000221980 3000 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
COL7A1Q02388 IRAK3-202ENST00000457197 1853 ntTSL 2 BASIC13.06□□□□□ -0.32
COL7A1Q02388 TMEM44-203ENST00000381975 2197 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
COL7A1Q02388 PLCD1-201ENST00000334661 2769 ntAPPRIS P3 TSL 1 (best) BASIC13.06□□□□□ -0.32
COL7A1Q02388 C8orf46-215ENST00000522977 1347 ntTSL 2 BASIC13.06□□□□□ -0.32
COL7A1Q02388 MRM3-201ENST00000304478 1809 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
COL7A1Q02388 GHDC-212ENST00000593209 1827 ntTSL 5 BASIC13.06□□□□□ -0.32
COL7A1Q02388 EEF1A2-201ENST00000217182 2006 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
COL7A1Q02388 SUSD1-204ENST00000374270 3124 ntAPPRIS P3 TSL 1 (best) BASIC13.06□□□□□ -0.32
COL7A1Q02388 SDHAF3-202ENST00000432641 2060 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
COL7A1Q02388 KIRREL2-201ENST00000262625 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC13.06□□□□□ -0.32
COL7A1Q02388 C5orf30-203ENST00000515669 1573 ntAPPRIS P1 TSL 3 BASIC13.06□□□□□ -0.32
COL7A1Q02388 APOA4-201ENST00000357780 1473 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
COL7A1Q02388 HELT-201ENST00000338875 1008 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
COL7A1Q02388 H3F3C-201ENST00000340398 1057 ntAPPRIS P1 BASIC13.06□□□□□ -0.32
COL7A1Q02388 GYG2P1-201ENST00000357871 623 ntTSL 3 BASIC13.06□□□□□ -0.32
COL7A1Q02388 AC138761.1-201ENST00000584393 385 ntBASIC13.06□□□□□ -0.32
COL7A1Q02388 AC011467.2-201ENST00000598425 242 ntBASIC13.06□□□□□ -0.32
COL7A1Q02388 DNAJC28-204ENST00000617313 2237 ntAPPRIS P1 TSL 5 BASIC13.06□□□□□ -0.32
COL7A1Q02388 WNT10B-202ENST00000403957 1817 ntTSL 5 BASIC13.06□□□□□ -0.32
COL7A1Q02388 FAM9A-202ENST00000543214 1544 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
COL7A1Q02388 RAB34-204ENST00000395245 1766 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
COL7A1Q02388 PAXIP1-202ENST00000404141 3827 ntAPPRIS P1 TSL 5 BASIC13.06□□□□□ -0.32
COL7A1Q02388 CYB561-213ENST00000581573 2344 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
COL7A1Q02388 JADE2-204ENST00000402835 2797 ntTSL 5 BASIC13.06□□□□□ -0.32
COL7A1Q02388 UPP1-201ENST00000331803 1932 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
COL7A1Q02388 IL17RC-203ENST00000403601 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC13.06□□□□□ -0.32
COL7A1Q02388 PNRC2-202ENST00000374468 814 ntAPPRIS P1 TSL 2 BASIC13.06□□□□□ -0.32
COL7A1Q02388 HIST1H2BD-202ENST00000377777 496 ntAPPRIS P1 BASIC13.06□□□□□ -0.32
COL7A1Q02388 ARAP1-AS1-201ENST00000542022 388 ntTSL 5 BASIC13.06□□□□□ -0.32
COL7A1Q02388 RPS29-206ENST00000557111 488 ntTSL 2 BASIC13.06□□□□□ -0.32
COL7A1Q02388 BRICD5-202ENST00000562360 783 ntTSL 2 BASIC13.06□□□□□ -0.32
COL7A1Q02388 AC008105.3-202ENST00000585471 1077 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
COL7A1Q02388 NKAPP1-205ENST00000585790 367 ntBASIC13.06□□□□□ -0.32
COL7A1Q02388 RAB3D-202ENST00000589655 924 ntAPPRIS P1 TSL 2 BASIC13.06□□□□□ -0.32
COL7A1Q02388 PRELID3A-208ENST00000590956 777 ntTSL 2 BASIC13.06□□□□□ -0.32
COL7A1Q02388 SELENOH-206ENST00000622257 1291 ntAPPRIS ALT1 TSL 5 BASIC13.06□□□□□ -0.32
COL7A1Q02388 CBWD1-202ENST00000356521 1706 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
COL7A1Q02388 RUSC1-214ENST00000490373 1700 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
COL7A1Q02388 COQ10A-202ENST00000433805 1410 ntAPPRIS ALT2 TSL 1 (best) BASIC13.05□□□□□ -0.32
COL7A1Q02388 LY6E-207ENST00000520466 1419 ntAPPRIS P2 TSL 2 BASIC13.05□□□□□ -0.32
COL7A1Q02388 NHLRC1-201ENST00000340650 2248 ntAPPRIS P1 BASIC13.05□□□□□ -0.32
COL7A1Q02388 ALDOA-212ENST00000564546 2104 ntAPPRIS P2 TSL 1 (best) BASIC13.05□□□□□ -0.32
Retrieved 100 of 98,524 protein–RNA pairs in 23 ms