Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 PROSER2-201ENST00000277570 3333 ntAPPRIS P2 TSL 1 (best) BASIC17.78■□□□□ 0.44
FOXA1P55317 C6orf223-203ENST00000442114 3109 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
FOXA1P55317 GALNT14-202ENST00000349752 2733 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
FOXA1P55317 CKMT1A-202ENST00000413453 1911 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
FOXA1P55317 CYP51A1P1-201ENST00000492267 1507 ntBASIC17.78■□□□□ 0.44
FOXA1P55317 FBXL5-202ENST00000412094 2837 ntAPPRIS ALT1 TSL 1 (best) BASIC17.78■□□□□ 0.44
FOXA1P55317 CD14-201ENST00000302014 1886 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
FOXA1P55317 ZNF446-207ENST00000610298 1869 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
FOXA1P55317 RNF166-203ENST00000541206 2419 ntTSL 2 BASIC17.78■□□□□ 0.44
FOXA1P55317 AC004890.2-202ENST00000463462 1494 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
FOXA1P55317 AC008393.1-201ENST00000499601 1454 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
FOXA1P55317 XRCC3-201ENST00000352127 2563 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
FOXA1P55317 PRR29-AS1-202ENST00000580942 2926 ntTSL 2 BASIC17.78■□□□□ 0.44
FOXA1P55317 PSTPIP1-201ENST00000379595 1840 ntAPPRIS ALT1 TSL 5 BASIC17.78■□□□□ 0.44
FOXA1P55317 PRSS3-201ENST00000342836 1144 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
FOXA1P55317 NPM3-201ENST00000370110 877 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
FOXA1P55317 SYCE1L-201ENST00000378644 858 ntAPPRIS P2 TSL 5 BASIC17.78■□□□□ 0.44
FOXA1P55317 TMSB4X-201ENST00000380633 495 ntAPPRIS P1 TSL 3 BASIC17.78■□□□□ 0.44
FOXA1P55317 TNNT3-206ENST00000381579 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
FOXA1P55317 SLC25A6P5-201ENST00000435663 894 ntBASIC17.78■□□□□ 0.44
FOXA1P55317 AL355355.2-201ENST00000442321 338 ntBASIC17.78■□□□□ 0.44
FOXA1P55317 COX6C-208ENST00000522940 694 ntAPPRIS P1 TSL 3 BASIC17.78■□□□□ 0.44
FOXA1P55317 AKIP1-206ENST00000525005 1128 ntTSL 2 BASIC17.78■□□□□ 0.44
FOXA1P55317 AL049780.2-201ENST00000556236 367 ntTSL 3 BASIC17.78■□□□□ 0.44
FOXA1P55317 RABAC1-210ENST00000601891 628 ntTSL 3 BASIC17.78■□□□□ 0.44
FOXA1P55317 THUMPD2-204ENST00000505747 1970 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
FOXA1P55317 GAB1-201ENST00000262994 2648 ntAPPRIS ALT1 TSL 1 (best) BASIC17.78■□□□□ 0.44
FOXA1P55317 MID1IP1-201ENST00000336949 2536 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
FOXA1P55317 FST-202ENST00000396947 2538 ntTSL 5 BASIC17.77■□□□□ 0.44
FOXA1P55317 C1orf159-205ENST00000421241 1841 ntAPPRIS P3 TSL 2 BASIC17.77■□□□□ 0.44
FOXA1P55317 MME-217ENST00000616757 1315 ntTSL 5 BASIC17.77■□□□□ 0.44
FOXA1P55317 MRGPRF-AS1-201ENST00000538407 1490 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
FOXA1P55317 SIDT2-217ENST00000532062 2143 ntTSL 2 BASIC17.77■□□□□ 0.44
FOXA1P55317 FAM53A-207ENST00000489363 2776 ntTSL 2 BASIC17.77■□□□□ 0.44
FOXA1P55317 AC007743.1-203ENST00000447423 1623 ntTSL 2 BASIC17.77■□□□□ 0.44
FOXA1P55317 CAMK4-210ENST00000512453 1640 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
FOXA1P55317 FOLH1-204ENST00000356696 2403 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
FOXA1P55317 MOCS2-202ENST00000396954 1785 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
FOXA1P55317 AL512380.2-201ENST00000637901 1780 ntTSL 5 BASIC17.77■□□□□ 0.44
FOXA1P55317 SP100-208ENST00000427101 1922 ntTSL 2 BASIC17.77■□□□□ 0.44
FOXA1P55317 AHRR-209ENST00000512529 1912 ntTSL 5 BASIC17.77■□□□□ 0.44
FOXA1P55317 AL445645.1-201ENST00000451318 1019 ntTSL 2 BASIC17.77■□□□□ 0.44
FOXA1P55317 TNFRSF1B-204ENST00000536782 557 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
FOXA1P55317 AP003071.4-201ENST00000562276 1284 ntBASIC17.77■□□□□ 0.44
FOXA1P55317 TNFRSF12A-206ENST00000575124 1133 ntTSL 2 BASIC17.77■□□□□ 0.44
FOXA1P55317 SMAGP-204ENST00000603838 816 ntTSL 2 BASIC17.77■□□□□ 0.44
FOXA1P55317 AP001412.1-201ENST00000608405 714 ntBASIC17.77■□□□□ 0.44
FOXA1P55317 AL023803.3-201ENST00000615559 522 ntBASIC17.77■□□□□ 0.44
FOXA1P55317 SLC35E2-201ENST00000246421 1430 ntAPPRIS P3 TSL 1 (best) BASIC17.77■□□□□ 0.44
FOXA1P55317 SYT8-202ENST00000381968 1424 ntAPPRIS P2 TSL 5 BASIC17.77■□□□□ 0.44
FOXA1P55317 SLC35F5-201ENST00000245680 4412 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
FOXA1P55317 PPP1R7-207ENST00000407025 1592 ntAPPRIS P1 TSL 5 BASIC17.77■□□□□ 0.44
FOXA1P55317 CD19-206ENST00000567541 1707 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.44
FOXA1P55317 MPP2-206ENST00000518766 1896 ntTSL 2 BASIC17.77■□□□□ 0.43
FOXA1P55317 HECTD2-203ENST00000371681 2175 ntTSL 2 BASIC17.77■□□□□ 0.43
FOXA1P55317 RTKN-203ENST00000305557 2646 ntAPPRIS P3 TSL 5 BASIC17.77■□□□□ 0.43
FOXA1P55317 FAM182B-201ENST00000376403 1681 ntAPPRIS P5 TSL 1 (best) BASIC17.77■□□□□ 0.43
FOXA1P55317 FGFR4-202ENST00000393637 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.43
FOXA1P55317 PRDM8-203ENST00000504452 3706 ntAPPRIS P1 TSL 5 BASIC17.76■□□□□ 0.43
FOXA1P55317 PARP16-202ENST00000444347 2352 ntTSL 2 BASIC17.76■□□□□ 0.43
FOXA1P55317 RNPS1-203ENST00000397086 2069 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
FOXA1P55317 PTGES-201ENST00000340607 1774 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
FOXA1P55317 CARNS1-202ENST00000445895 3971 ntAPPRIS P1 TSL 5 BASIC17.76■□□□□ 0.43
FOXA1P55317 DKK3-203ENST00000525493 1326 ntTSL 2 BASIC17.76■□□□□ 0.43
FOXA1P55317 MYH7B-201ENST00000262873 6293 ntAPPRIS P2 TSL 1 (best) BASIC17.76■□□□□ 0.43
FOXA1P55317 NEU1-206ENST00000375631 2045 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
FOXA1P55317 VIM-201ENST00000224237 1868 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
FOXA1P55317 LINC00957-202ENST00000441052 2590 ntTSL 2 BASIC17.76■□□□□ 0.43
FOXA1P55317 CDK11A-203ENST00000357760 2446 ntAPPRIS ALT1 TSL 1 (best) BASIC17.76■□□□□ 0.43
FOXA1P55317 CDK11A-204ENST00000358779 2419 ntAPPRIS ALT1 TSL 1 (best) BASIC17.76■□□□□ 0.43
FOXA1P55317 CDK11A-206ENST00000378638 2429 ntTSL 5 BASIC17.76■□□□□ 0.43
FOXA1P55317 CDK11A-208ENST00000404249 2449 ntAPPRIS P4 TSL 1 (best) BASIC17.76■□□□□ 0.43
FOXA1P55317 SEPT2-208ENST00000407971 3267 ntTSL 5 BASIC17.76■□□□□ 0.43
FOXA1P55317 AC012317.2-201ENST00000623305 2251 ntBASIC17.76■□□□□ 0.43
FOXA1P55317 AC073343.2-203ENST00000366167 564 ntTSL 4 BASIC17.76■□□□□ 0.43
FOXA1P55317 MDFI-202ENST00000373050 809 ntTSL 2 BASIC17.76■□□□□ 0.43
FOXA1P55317 AL445685.1-201ENST00000425802 762 ntTSL 3 BASIC17.76■□□□□ 0.43
FOXA1P55317 ATP5S-204ENST00000426751 1171 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
FOXA1P55317 OOEP-AS1-201ENST00000445350 463 ntTSL 3 BASIC17.76■□□□□ 0.43
FOXA1P55317 PAIP2-208ENST00000511706 468 ntTSL 5 BASIC17.76■□□□□ 0.43
FOXA1P55317 AP003041.3-201ENST00000527151 707 ntBASIC17.76■□□□□ 0.43
FOXA1P55317 AP005242.2-201ENST00000580065 1175 ntBASIC17.76■□□□□ 0.43
FOXA1P55317 ERCC2-205ENST00000485403 1538 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
FOXA1P55317 CLDN9-201ENST00000445369 2050 ntAPPRIS P1 BASIC17.76■□□□□ 0.43
FOXA1P55317 SCAND1-203ENST00000615116 1371 ntAPPRIS P1 TSL 5 BASIC17.76■□□□□ 0.43
FOXA1P55317 IL18BP-207ENST00000404792 2172 ntAPPRIS P2 TSL 1 (best) BASIC17.76■□□□□ 0.43
FOXA1P55317 ARHGAP23-222ENST00000622683 5964 ntAPPRIS P2 TSL 5 BASIC17.76■□□□□ 0.43
FOXA1P55317 UBXN2A-201ENST00000309033 6066 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
FOXA1P55317 AL034417.2-201ENST00000445300 2044 ntTSL 2 BASIC17.76■□□□□ 0.43
FOXA1P55317 AC009102.3-201ENST00000623118 1491 ntBASIC17.75■□□□□ 0.43
FOXA1P55317 SAR1B-208ENST00000507419 2287 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
FOXA1P55317 ZBTB16-201ENST00000335953 2523 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
FOXA1P55317 PTPRK-218ENST00000525459 1722 ntTSL 2 BASIC17.75■□□□□ 0.43
FOXA1P55317 RBM17-201ENST00000379888 2755 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
FOXA1P55317 ZCWPW1-202ENST00000398027 2356 ntAPPRIS P3 TSL 1 (best) BASIC17.75■□□□□ 0.43
FOXA1P55317 KLHL22-201ENST00000328879 2616 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
FOXA1P55317 SLC39A1-210ENST00000617697 2214 ntAPPRIS P1 TSL 5 BASIC17.75■□□□□ 0.43
FOXA1P55317 SIM2-201ENST00000290399 4442 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
FOXA1P55317 NOMO2-212ENST00000622306 4252 ntAPPRIS P3 TSL 1 (best) BASIC17.75■□□□□ 0.43
FOXA1P55317 KIRREL2-205ENST00000592409 2563 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 40 ms