Protein–RNA interactions for Protein: P51956

NEK3, Serine/threonine-protein kinase Nek3, humanhuman

Predictions only

Length 506 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3P51956 NTRK1-203ENST00000392302 2609 ntTSL 5 BASIC18.92■□□□□ 0.62
NEK3P51956 MATN4-201ENST00000353917 1657 ntTSL 5 BASIC18.92■□□□□ 0.62
NEK3P51956 MBD1-206ENST00000382948 2434 ntAPPRIS P3 TSL 2 BASIC18.92■□□□□ 0.62
NEK3P51956 RHOU-201ENST00000366691 4372 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
NEK3P51956 KATNBL1P6-202ENST00000562413 1466 ntBASIC18.92■□□□□ 0.62
NEK3P51956 MED25-212ENST00000618715 1467 ntTSL 5 BASIC18.92■□□□□ 0.62
NEK3P51956 PDLIM3-202ENST00000284770 1766 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
NEK3P51956 ZHX3-212ENST00000558993 1528 ntTSL 5 BASIC18.92■□□□□ 0.62
NEK3P51956 HIST2H2AB-201ENST00000331128 393 ntAPPRIS P1 BASIC18.92■□□□□ 0.62
NEK3P51956 ST20-202ENST00000485386 529 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
NEK3P51956 AZIN1-AS1-214ENST00000522850 473 ntTSL 3 BASIC18.92■□□□□ 0.62
NEK3P51956 MTHFS-202ENST00000559722 948 ntTSL 2 BASIC18.92■□□□□ 0.62
NEK3P51956 C17orf62-221ENST00000581196 668 ntTSL 4 BASIC18.92■□□□□ 0.62
NEK3P51956 UBA52-210ENST00000598780 668 ntAPPRIS P1 TSL 3 BASIC18.92■□□□□ 0.62
NEK3P51956 COLCA2-205ENST00000614153 1264 ntTSL 3 BASIC18.92■□□□□ 0.62
NEK3P51956 ADORA1-208ENST00000618295 862 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
NEK3P51956 MARK4-211ENST00000622871 1147 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
NEK3P51956 PDLIM3-201ENST00000284767 2589 ntTSL 5 BASIC18.92■□□□□ 0.62
NEK3P51956 LRRN4CL-201ENST00000317449 2585 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
NEK3P51956 AC118553.2-203ENST00000639037 2590 ntAPPRIS P5 TSL 5 BASIC18.92■□□□□ 0.62
NEK3P51956 RBL2-201ENST00000262133 4906 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
NEK3P51956 SLC35B2-207ENST00000619636 2063 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
NEK3P51956 MFSD1-201ENST00000264266 1594 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
NEK3P51956 FBXL15-201ENST00000224862 2362 ntAPPRIS P2 TSL 1 (best) BASIC18.92■□□□□ 0.62
NEK3P51956 HOXA13-201ENST00000222753 5030 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
NEK3P51956 BRMS1L-201ENST00000216807 2657 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
NEK3P51956 CNTNAP3B-203ENST00000377561 5379 ntAPPRIS P2 TSL 1 (best) BASIC18.92■□□□□ 0.62
NEK3P51956 ABHD14B-202ENST00000361143 1636 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
NEK3P51956 JPT1-203ENST00000409753 1605 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
NEK3P51956 CD276-201ENST00000318424 2738 ntTSL 5 BASIC18.92■□□□□ 0.62
NEK3P51956 SMN2-202ENST00000380742 1388 ntAPPRIS ALT2 TSL 5 BASIC18.92■□□□□ 0.62
NEK3P51956 TRAPPC2L-201ENST00000301021 2215 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
NEK3P51956 ACADS-201ENST00000242592 1950 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
NEK3P51956 GBGT1-203ENST00000372040 1980 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
NEK3P51956 KIF16B-206ENST00000636835 5109 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
NEK3P51956 MCOLN2-201ENST00000284027 1729 ntAPPRIS P1 TSL 5 BASIC18.91■□□□□ 0.62
NEK3P51956 NR1H2-202ENST00000411902 1466 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
NEK3P51956 OGFOD2-205ENST00000454694 1488 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
NEK3P51956 SSUH2-202ENST00000341795 1799 ntAPPRIS P3 TSL 1 (best) BASIC18.91■□□□□ 0.62
NEK3P51956 PIGV-201ENST00000078527 2367 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
NEK3P51956 BAIAP2L2-202ENST00000381669 2146 ntAPPRIS P2 TSL 1 (best) BASIC18.91■□□□□ 0.62
NEK3P51956 AC126763.1-201ENST00000552015 2118 ntBASIC18.91■□□□□ 0.62
NEK3P51956 PTPRJ-207ENST00000613246 7851 ntAPPRIS ALT2 TSL 5 BASIC18.91■□□□□ 0.62
NEK3P51956 SLC29A4-202ENST00000396872 5685 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
NEK3P51956 QKI-203ENST00000361752 9463 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
NEK3P51956 TSPAN14-202ENST00000341863 1037 ntTSL 5 BASIC18.91■□□□□ 0.62
NEK3P51956 HSD11B1L-205ENST00000422535 730 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
NEK3P51956 SAPCD2P2-201ENST00000431719 1174 ntBASIC18.91■□□□□ 0.62
NEK3P51956 MAP3K13-213ENST00000454237 526 ntTSL 3 BASIC18.91■□□□□ 0.62
NEK3P51956 AC019068.1-202ENST00000483218 768 ntTSL 3 BASIC18.91■□□□□ 0.62
NEK3P51956 APBB3-216ENST00000511201 1014 ntTSL 5 BASIC18.91■□□□□ 0.62
NEK3P51956 IFI27L2-206ENST00000556727 556 ntTSL 3 BASIC18.91■□□□□ 0.62
NEK3P51956 UQCR11-201ENST00000585671 753 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
NEK3P51956 ARNT-202ENST00000358595 4887 ntAPPRIS P3 TSL 1 (best) BASIC18.91■□□□□ 0.62
NEK3P51956 DIO1-201ENST00000322679 1658 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
NEK3P51956 DIO1-217ENST00000617230 1656 ntTSL 5 BASIC18.91■□□□□ 0.62
NEK3P51956 SPART-209ENST00000494062 3018 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
NEK3P51956 FUCA1-201ENST00000374479 2047 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
NEK3P51956 KCNQ2-218ENST00000629676 2399 ntTSL 5 BASIC18.91■□□□□ 0.62
NEK3P51956 ZMYM5-202ENST00000382905 1382 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
NEK3P51956 PTPRK-218ENST00000525459 1722 ntTSL 2 BASIC18.91■□□□□ 0.62
NEK3P51956 FAM53A-207ENST00000489363 2776 ntTSL 2 BASIC18.91■□□□□ 0.62
NEK3P51956 ZCWPW1-201ENST00000360951 2110 ntAPPRIS ALT2 TSL 2 BASIC18.91■□□□□ 0.62
NEK3P51956 ARAP1-AS2-201ENST00000500163 1824 ntTSL 2 BASIC18.9■□□□□ 0.62
NEK3P51956 WIPF1-206ENST00000409891 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
NEK3P51956 ZGPAT-202ENST00000355969 1871 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
NEK3P51956 ANKRD13B-209ENST00000614878 2670 ntAPPRIS P1 TSL 5 BASIC18.9■□□□□ 0.62
NEK3P51956 CKMT1A-202ENST00000413453 1911 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
NEK3P51956 RPS6KB1-204ENST00000443572 1913 ntTSL 2 BASIC18.9■□□□□ 0.62
NEK3P51956 CCDC91-220ENST00000545336 2738 ntAPPRIS P1 TSL 5 BASIC18.9■□□□□ 0.62
NEK3P51956 SEPT8-201ENST00000296873 4394 ntAPPRIS P2 TSL 1 (best) BASIC18.9■□□□□ 0.62
NEK3P51956 N4BP2L1-210ENST00000613078 2032 ntTSL 5 BASIC18.9■□□□□ 0.62
NEK3P51956 PDE9A-209ENST00000398227 1606 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
NEK3P51956 PPP2R2C-206ENST00000507294 1667 ntTSL 2 BASIC18.9■□□□□ 0.62
NEK3P51956 ZBTB16-201ENST00000335953 2523 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
NEK3P51956 OBSL1-203ENST00000373876 5503 ntTSL 5 BASIC18.9■□□□□ 0.62
NEK3P51956 SNCB-202ENST00000393693 1234 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
NEK3P51956 CCNG1-211ENST00000512163 919 ntTSL 2 BASIC18.9■□□□□ 0.62
NEK3P51956 MOK-234ENST00000524370 1165 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
NEK3P51956 REEP1-207ENST00000535845 1196 ntTSL 2 BASIC18.9■□□□□ 0.62
NEK3P51956 ETFA-216ENST00000560726 942 ntTSL 3 BASIC18.9■□□□□ 0.62
NEK3P51956 MIR3180-5-201ENST00000583743 153 ntBASIC18.9■□□□□ 0.62
NEK3P51956 EEF2KMT-206ENST00000587133 873 ntAPPRIS ALT2 TSL 3 BASIC18.9■□□□□ 0.62
NEK3P51956 BCL2L12-208ENST00000600947 633 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
NEK3P51956 GOLGA2P10-204ENST00000618004 1349 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
NEK3P51956 KCNK4-205ENST00000538767 1389 ntTSL 2 BASIC18.9■□□□□ 0.62
NEK3P51956 NR2F1-205ENST00000615873 1427 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
NEK3P51956 CD164L2-202ENST00000374027 1457 ntAPPRIS P3 TSL 1 (best) BASIC18.9■□□□□ 0.62
NEK3P51956 PLCG1-AS1-201ENST00000454626 1462 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
NEK3P51956 HARBI1-201ENST00000326737 1967 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
NEK3P51956 ZNRF2-201ENST00000323037 3460 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
NEK3P51956 ARPC4-201ENST00000397261 2582 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.62
NEK3P51956 AC036111.1-201ENST00000533973 1582 ntBASIC18.89■□□□□ 0.62
NEK3P51956 WIPI1-202ENST00000546360 1575 ntTSL 2 BASIC18.89■□□□□ 0.62
NEK3P51956 TTC22-201ENST00000371274 2149 ntTSL 2 BASIC18.89■□□□□ 0.62
NEK3P51956 LRRC32-202ENST00000404995 2656 ntAPPRIS P1 TSL 5 BASIC18.89■□□□□ 0.62
NEK3P51956 AC138430.1-201ENST00000586064 5409 ntTSL 2 BASIC18.89■□□□□ 0.62
NEK3P51956 MINPP1-201ENST00000371994 2183 ntTSL 1 (best) BASIC18.89■□□□□ 0.62
NEK3P51956 MYBL2-202ENST00000396863 2704 ntTSL 2 BASIC18.89■□□□□ 0.62
NEK3P51956 PLK1-201ENST00000300093 2227 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 31.7 ms