Protein–RNA interactions for Protein: P48431

SOX2, Transcription factor SOX-2, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX2P48431 LRCH1-201ENST00000311191 4710 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
SOX2P48431 MARK2-209ENST00000509502 2862 ntAPPRIS ALT2 TSL 2 BASIC16.19■□□□□ 0.18
SOX2P48431 CIRBP-202ENST00000413636 1606 ntTSL 2 BASIC16.19■□□□□ 0.18
SOX2P48431 SNAPC3-207ENST00000610884 2453 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
SOX2P48431 P2RY6-202ENST00000393590 2398 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
SOX2P48431 TWIST2-202ENST00000612363 1404 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
SOX2P48431 PDS5A-201ENST00000303538 7176 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
SOX2P48431 SOCS7-201ENST00000612932 7857 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
SOX2P48431 GOLGA2P7-201ENST00000316967 2525 ntTSL 2 BASIC16.18■□□□□ 0.18
SOX2P48431 CDK11A-203ENST00000357760 2446 ntAPPRIS ALT1 TSL 1 (best) BASIC16.18■□□□□ 0.18
SOX2P48431 CDK11A-204ENST00000358779 2419 ntAPPRIS ALT1 TSL 1 (best) BASIC16.18■□□□□ 0.18
SOX2P48431 CDK11A-206ENST00000378638 2429 ntTSL 5 BASIC16.18■□□□□ 0.18
SOX2P48431 CDK11A-208ENST00000404249 2449 ntAPPRIS P4 TSL 1 (best) BASIC16.18■□□□□ 0.18
SOX2P48431 MEF2A-204ENST00000557785 2854 ntAPPRIS ALT1 TSL 5 BASIC16.18■□□□□ 0.18
SOX2P48431 BPIFB3-201ENST00000375494 1454 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
SOX2P48431 PAQR6-201ENST00000292291 1908 ntAPPRIS P3 TSL 1 (best) BASIC16.18■□□□□ 0.18
SOX2P48431 CRYBB2P1-202ENST00000382734 1364 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
SOX2P48431 RPP25L-201ENST00000297613 1092 ntAPPRIS P1 TSL 2 BASIC16.18■□□□□ 0.18
SOX2P48431 TSTD1-201ENST00000318289 626 ntAPPRIS P3 TSL 1 (best) BASIC16.18■□□□□ 0.18
SOX2P48431 CEACAM3-201ENST00000344550 1022 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
SOX2P48431 AL355802.2-201ENST00000402069 882 ntBASIC16.18■□□□□ 0.18
SOX2P48431 AC004980.1-204ENST00000429707 299 ntBASIC16.18■□□□□ 0.18
SOX2P48431 ZNF436-AS1-202ENST00000437367 606 ntTSL 2 BASIC16.18■□□□□ 0.18
SOX2P48431 NELFE-206ENST00000444811 1202 ntAPPRIS ALT2 TSL 2 BASIC16.18■□□□□ 0.18
SOX2P48431 NREP-209ENST00000455559 698 ntAPPRIS P1 TSL 4 BASIC16.18■□□□□ 0.18
SOX2P48431 H1FX-AS1-204ENST00000511998 917 ntTSL 5 BASIC16.18■□□□□ 0.18
SOX2P48431 OPA3-203ENST00000544371 1146 ntTSL 2 BASIC16.18■□□□□ 0.18
SOX2P48431 TESC-AS1-201ENST00000547006 1053 ntTSL 2 BASIC16.18■□□□□ 0.18
SOX2P48431 BCL2L10-202ENST00000561198 825 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
SOX2P48431 GNAO1-211ENST00000570235 568 ntTSL 2 BASIC16.18■□□□□ 0.18
SOX2P48431 C17orf62-238ENST00000585064 1074 ntAPPRIS P1 TSL 2 BASIC16.18■□□□□ 0.18
SOX2P48431 TMEM191B-203ENST00000613597 366 ntAPPRIS ALT2 TSL 5 BASIC16.18■□□□□ 0.18
SOX2P48431 SERPINH1-215ENST00000533603 2299 ntAPPRIS P1 TSL 2 BASIC16.18■□□□□ 0.18
SOX2P48431 SMCHD1-201ENST00000320876 8821 ntAPPRIS P1 TSL 5 BASIC16.18■□□□□ 0.18
SOX2P48431 BCAR1-201ENST00000162330 3221 ntAPPRIS P3 TSL 1 (best) BASIC16.18■□□□□ 0.18
SOX2P48431 ARMC10-209ENST00000454559 2347 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
SOX2P48431 CALHM2-201ENST00000260743 1859 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
SOX2P48431 ASB18-201ENST00000409749 1401 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
SOX2P48431 KCNQ2-207ENST00000370224 3004 ntTSL 5 BASIC16.18■□□□□ 0.18
SOX2P48431 DNAJC8-201ENST00000263697 1759 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
SOX2P48431 PRR29-AS1-202ENST00000580942 2926 ntTSL 2 BASIC16.18■□□□□ 0.18
SOX2P48431 LZTS3-203ENST00000360342 4055 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
SOX2P48431 TPD52L1-202ENST00000368388 2147 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
SOX2P48431 C14orf180-202ENST00000410013 2009 ntAPPRIS P3 TSL 1 (best) BASIC16.18■□□□□ 0.18
SOX2P48431 EHMT1-204ENST00000462484 2707 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
SOX2P48431 HOTTIP-202ENST00000472494 2285 ntTSL 2 BASIC16.17■□□□□ 0.18
SOX2P48431 TNIP1-221ENST00000610874 2629 ntTSL 5 BASIC16.17■□□□□ 0.18
SOX2P48431 STRN4-201ENST00000263280 3210 ntAPPRIS P3 TSL 1 (best) BASIC16.17■□□□□ 0.18
SOX2P48431 FAM129C-202ENST00000335393 2508 ntAPPRIS P3 TSL 1 (best) BASIC16.17■□□□□ 0.18
SOX2P48431 CHTOP-207ENST00000614256 1840 ntTSL 3 BASIC16.17■□□□□ 0.18
SOX2P48431 C1orf159-204ENST00000379339 2429 ntAPPRIS ALT2 TSL 2 BASIC16.17■□□□□ 0.18
SOX2P48431 CYP4F2-201ENST00000011989 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC16.17■□□□□ 0.18
SOX2P48431 SDHA-204ENST00000504309 2067 ntTSL 5 BASIC16.17■□□□□ 0.18
SOX2P48431 SSC5D-202ENST00000587166 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
SOX2P48431 HECTD2-204ENST00000446394 4939 ntTSL 2 BASIC16.17■□□□□ 0.18
SOX2P48431 RPL32-202ENST00000396953 1734 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
SOX2P48431 JAKMIP1-208ENST00000637373 1362 ntTSL 5 BASIC16.17■□□□□ 0.18
SOX2P48431 TRAPPC2L-201ENST00000301021 2215 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
SOX2P48431 MINOS1-NBL1-204ENST00000602662 1623 ntAPPRIS P1 TSL 2 BASIC16.17■□□□□ 0.18
SOX2P48431 ISG20-201ENST00000306072 1856 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
SOX2P48431 AC139713.2-201ENST00000641328 2723 ntBASIC16.17■□□□□ 0.18
SOX2P48431 COX7A1-201ENST00000292907 762 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
SOX2P48431 CLTA-202ENST00000345519 1073 ntAPPRIS ALT1 TSL 1 (best) BASIC16.17■□□□□ 0.18
SOX2P48431 CCT7-202ENST00000398422 1234 ntTSL 2 BASIC16.17■□□□□ 0.18
SOX2P48431 AC091390.4-202ENST00000476426 537 ntBASIC16.17■□□□□ 0.18
SOX2P48431 LY6E-205ENST00000519611 635 ntTSL 3 BASIC16.17■□□□□ 0.18
SOX2P48431 LY6E-212ENST00000522024 868 ntAPPRIS P2 TSL 5 BASIC16.17■□□□□ 0.18
SOX2P48431 SUMO2-203ENST00000578238 490 ntTSL 2 BASIC16.17■□□□□ 0.18
SOX2P48431 NOX4-201ENST00000263317 2388 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
SOX2P48431 HHATL-201ENST00000310417 1750 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
SOX2P48431 CSAD-209ENST00000453446 1774 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
SOX2P48431 SELENOF-207ENST00000611507 1785 ntTSL 5 BASIC16.17■□□□□ 0.18
SOX2P48431 CSRNP1-201ENST00000273153 3148 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
SOX2P48431 GPRIN2-201ENST00000374314 1696 ntAPPRIS P1 BASIC16.17■□□□□ 0.18
SOX2P48431 PNLDC1-207ENST00000610273 1940 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
SOX2P48431 GTF2IRD2-207ENST00000625377 1910 ntTSL 5 BASIC16.17■□□□□ 0.18
SOX2P48431 MIPEP-201ENST00000382172 2400 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
SOX2P48431 PTGDR-201ENST00000306051 2942 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
SOX2P48431 SLC30A2-202ENST00000374278 3097 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
SOX2P48431 VPS26B-202ENST00000525095 1558 ntAPPRIS P1 TSL 5 BASIC16.17■□□□□ 0.18
SOX2P48431 KLC2-201ENST00000316924 2990 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
SOX2P48431 KDM6A-202ENST00000382899 5789 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
SOX2P48431 AL109910.2-201ENST00000607733 1953 ntTSL 2 BASIC16.17■□□□□ 0.18
SOX2P48431 DENND5B-201ENST00000354285 3132 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
SOX2P48431 ISLR2-203ENST00000435464 4259 ntAPPRIS P1 TSL 2 BASIC16.16■□□□□ 0.18
SOX2P48431 AC106820.2-201ENST00000563775 3264 ntBASIC16.16■□□□□ 0.18
SOX2P48431 ADAMTS16-201ENST00000274181 4979 ntAPPRIS P1 TSL 2 BASIC16.16■□□□□ 0.18
SOX2P48431 CDH24-204ENST00000487137 3438 ntAPPRIS P1 TSL 5 BASIC16.16■□□□□ 0.18
SOX2P48431 RPN2-201ENST00000237530 2515 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
SOX2P48431 RNF166-203ENST00000541206 2419 ntTSL 2 BASIC16.16■□□□□ 0.18
SOX2P48431 CCM2-207ENST00000475551 2471 ntAPPRIS ALT2 TSL 2 BASIC16.16■□□□□ 0.18
SOX2P48431 ACBD4-215ENST00000592162 1684 ntTSL 5 BASIC16.16■□□□□ 0.18
SOX2P48431 IL17C-201ENST00000244241 1044 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
SOX2P48431 TRAPPC5-201ENST00000317378 790 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
SOX2P48431 PRSS57-201ENST00000329267 1025 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
SOX2P48431 UBE2F-203ENST00000409633 837 ntTSL 3 BASIC16.16■□□□□ 0.18
SOX2P48431 IDH1-AS1-202ENST00000448588 489 ntTSL 3 BASIC16.16■□□□□ 0.18
SOX2P48431 ALKAL1-202ENST00000523939 536 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
SOX2P48431 AMN1-211ENST00000541931 880 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
SOX2P48431 LINC01578-208ENST00000557147 490 ntTSL 3 BASIC16.16■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 22.2 ms