Protein–RNA interactions for Protein: P41002

CCNF, Cyclin-F, humanhuman

Predictions only

Length 786 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCNFP41002 ATXN7-210ENST00000487717 3683 ntAPPRIS P3 TSL 5 BASIC18.47■□□□□ 0.55
CCNFP41002 CRTC1-201ENST00000321949 2501 ntAPPRIS P3 TSL 1 (best) BASIC18.47■□□□□ 0.55
CCNFP41002 ALAS2-203ENST00000396198 1936 ntTSL 5 BASIC18.47■□□□□ 0.55
CCNFP41002 VHL-202ENST00000345392 2696 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
CCNFP41002 ADSL-202ENST00000342312 1808 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
CCNFP41002 C9orf66-201ENST00000382387 2918 ntAPPRIS P1 BASIC18.46■□□□□ 0.55
CCNFP41002 RNPS1-203ENST00000397086 2069 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
CCNFP41002 DNAJB2-201ENST00000336576 3176 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
CCNFP41002 CDC14B-208ENST00000463569 1734 ntAPPRIS ALT2 TSL 5 BASIC18.46■□□□□ 0.55
CCNFP41002 NOL4-211ENST00000589544 2221 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
CCNFP41002 CCDC137-201ENST00000329214 2468 ntAPPRIS P2 TSL 1 (best) BASIC18.46■□□□□ 0.55
CCNFP41002 NCF1-201ENST00000289473 1396 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
CCNFP41002 P2RY6-202ENST00000393590 2398 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
CCNFP41002 MTHFD2L-203ENST00000395759 2354 ntAPPRIS P2 TSL 5 BASIC18.46■□□□□ 0.55
CCNFP41002 ZCWPW1-202ENST00000398027 2356 ntAPPRIS P3 TSL 1 (best) BASIC18.46■□□□□ 0.55
CCNFP41002 FAM118A-202ENST00000405673 1612 ntTSL 5 BASIC18.46■□□□□ 0.55
CCNFP41002 PLD3-207ENST00000409735 2140 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
CCNFP41002 ACOXL-205ENST00000439055 2373 ntTSL 2 BASIC18.46■□□□□ 0.55
CCNFP41002 MFSD14A-201ENST00000370152 2777 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
CCNFP41002 UBAP1-203ENST00000379186 2524 ntTSL 5 BASIC18.46■□□□□ 0.55
CCNFP41002 SSC5D-201ENST00000389623 4845 ntAPPRIS P3 TSL 1 (best) BASIC18.46■□□□□ 0.55
CCNFP41002 AL390719.1-201ENST00000427998 977 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
CCNFP41002 AL365259.1-203ENST00000451660 707 ntTSL 3 BASIC18.46■□□□□ 0.55
CCNFP41002 RPL29-204ENST00000479017 670 ntAPPRIS P1 TSL 3 BASIC18.46■□□□□ 0.55
CCNFP41002 CDK11A-203ENST00000357760 2446 ntAPPRIS ALT1 TSL 1 (best) BASIC18.46■□□□□ 0.55
CCNFP41002 CDK11A-204ENST00000358779 2419 ntAPPRIS ALT1 TSL 1 (best) BASIC18.46■□□□□ 0.55
CCNFP41002 CDK11A-206ENST00000378638 2429 ntTSL 5 BASIC18.46■□□□□ 0.55
CCNFP41002 CDK11A-208ENST00000404249 2449 ntAPPRIS P4 TSL 1 (best) BASIC18.46■□□□□ 0.55
CCNFP41002 KLF6-204ENST00000469435 2169 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
CCNFP41002 KIF16B-206ENST00000636835 5109 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
CCNFP41002 CLASRP-203ENST00000391953 1941 ntTSL 2 BASIC18.46■□□□□ 0.55
CCNFP41002 TSPAN17-201ENST00000298564 2810 ntTSL 2 BASIC18.46■□□□□ 0.55
CCNFP41002 AL445686.2-201ENST00000577528 1445 ntTSL 3 BASIC18.46■□□□□ 0.55
CCNFP41002 IFNL4-203ENST00000634680 1421 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
CCNFP41002 ARNTL-205ENST00000403510 2745 ntTSL 2 BASIC18.46■□□□□ 0.55
CCNFP41002 MXRA8-209ENST00000477278 2728 ntTSL 5 BASIC18.46■□□□□ 0.55
CCNFP41002 GPR42-201ENST00000454971 1804 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
CCNFP41002 ALDH1A3-201ENST00000329841 3924 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
CCNFP41002 ERLIN1-203ENST00000421367 5792 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
CCNFP41002 CD19-202ENST00000538922 1957 ntAPPRIS ALT2 TSL 5 BASIC18.46■□□□□ 0.55
CCNFP41002 RTN4-204ENST00000357732 2390 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
CCNFP41002 SH2D3C-203ENST00000373277 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
CCNFP41002 OSMR-202ENST00000502536 1740 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
CCNFP41002 ETS1-207ENST00000531611 2134 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
CCNFP41002 ZBTB45-202ENST00000594051 2541 ntAPPRIS P1 TSL 2 BASIC18.46■□□□□ 0.55
CCNFP41002 ETNK2-202ENST00000367201 2431 ntAPPRIS ALT2 TSL 2 BASIC18.45■□□□□ 0.54
CCNFP41002 XYLT1-201ENST00000261381 9891 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
CCNFP41002 FCGRT-201ENST00000221466 1798 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
CCNFP41002 MON1B-202ENST00000439557 1759 ntTSL 2 BASIC18.45■□□□□ 0.54
CCNFP41002 ZNF133-210ENST00000535822 2341 ntTSL 3 BASIC18.45■□□□□ 0.54
CCNFP41002 ACBD4-215ENST00000592162 1684 ntTSL 5 BASIC18.45■□□□□ 0.54
CCNFP41002 PHLDA1-202ENST00000602540 5741 ntAPPRIS ALT2 TSL 1 (best) BASIC18.45■□□□□ 0.54
CCNFP41002 TLE3-226ENST00000627388 5742 ntAPPRIS ALT1 TSL 5 BASIC18.45■□□□□ 0.54
CCNFP41002 VPS26A-202ENST00000373382 3229 ntAPPRIS P1 TSL 5 BASIC18.45■□□□□ 0.54
CCNFP41002 FKBP10-201ENST00000321562 2662 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
CCNFP41002 DVL2-209ENST00000575458 2659 ntAPPRIS ALT2 TSL 2 BASIC18.45■□□□□ 0.54
CCNFP41002 MIR1238-201ENST00000408483 83 ntBASIC18.45■□□□□ 0.54
CCNFP41002 FDX2-206ENST00000492239 773 ntTSL 2 BASIC18.45■□□□□ 0.54
CCNFP41002 AC098864.1-204ENST00000513752 805 ntTSL 4 BASIC18.45■□□□□ 0.54
CCNFP41002 AP002433.1-201ENST00000525548 964 ntTSL 3 BASIC18.45■□□□□ 0.54
CCNFP41002 SLC39A13-212ENST00000531974 856 ntTSL 2 BASIC18.45■□□□□ 0.54
CCNFP41002 ZNF561-AS1-202ENST00000586614 568 ntTSL 5 BASIC18.45■□□□□ 0.54
CCNFP41002 AC008763.3-201ENST00000597959 777 ntAPPRIS P1 TSL 4 BASIC18.45■□□□□ 0.54
CCNFP41002 ASCL5-202ENST00000458416 1420 ntAPPRIS P1 BASIC18.45■□□□□ 0.54
CCNFP41002 C18orf21-205ENST00000592875 1581 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
CCNFP41002 CMPK2-201ENST00000256722 2884 ntAPPRIS P3 TSL 1 (best) BASIC18.45■□□□□ 0.54
CCNFP41002 TMEM104-202ENST00000417024 1781 ntTSL 2 BASIC18.45■□□□□ 0.54
CCNFP41002 MYZAP-201ENST00000267853 2361 ntAPPRIS P3 TSL 1 (best) BASIC18.45■□□□□ 0.54
CCNFP41002 MYO9A-214ENST00000566885 5111 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
CCNFP41002 DVL2-201ENST00000005340 3018 ntAPPRIS P2 TSL 1 (best) BASIC18.44■□□□□ 0.54
CCNFP41002 LHFPL6-201ENST00000379589 2110 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
CCNFP41002 SERPINH1-212ENST00000530284 1358 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
CCNFP41002 PRDM8-203ENST00000504452 3706 ntAPPRIS P1 TSL 5 BASIC18.44■□□□□ 0.54
CCNFP41002 IL18BP-207ENST00000404792 2172 ntAPPRIS P2 TSL 1 (best) BASIC18.44■□□□□ 0.54
CCNFP41002 SIRT1-201ENST00000212015 4094 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
CCNFP41002 RPL32-202ENST00000396953 1734 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
CCNFP41002 NFATC2IP-201ENST00000320805 4569 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
CCNFP41002 APP-203ENST00000354192 3167 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
CCNFP41002 COX5A-201ENST00000322347 1268 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
CCNFP41002 TSPAN14-205ENST00000372158 1095 ntAPPRIS P1 TSL 5 BASIC18.44■□□□□ 0.54
CCNFP41002 C2orf69P3-201ENST00000565542 1120 ntBASIC18.44■□□□□ 0.54
CCNFP41002 NMRK1-203ENST00000376811 2050 ntTSL 2 BASIC18.44■□□□□ 0.54
CCNFP41002 APBB1-215ENST00000608394 2128 ntTSL 5 BASIC18.44■□□□□ 0.54
CCNFP41002 APBB1-222ENST00000610474 2147 ntTSL 5 BASIC18.44■□□□□ 0.54
CCNFP41002 SEPT2-208ENST00000407971 3267 ntTSL 5 BASIC18.44■□□□□ 0.54
CCNFP41002 PCDHA8-201ENST00000378123 2616 ntAPPRIS ALT2 BASIC18.44■□□□□ 0.54
CCNFP41002 ZZZ3-201ENST00000370798 2468 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
CCNFP41002 AC005498.3-201ENST00000596587 2045 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
CCNFP41002 WWC3-201ENST00000380861 6647 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
CCNFP41002 SULT1A1-204ENST00000395609 1871 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
CCNFP41002 MPP2-206ENST00000518766 1896 ntTSL 2 BASIC18.43■□□□□ 0.54
CCNFP41002 RENBP-202ENST00000393700 1388 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
CCNFP41002 DBX1-201ENST00000524983 1380 ntAPPRIS P1 TSL 5 BASIC18.43■□□□□ 0.54
CCNFP41002 CADPS2-202ENST00000334010 6045 ntAPPRIS ALT2 TSL 5 BASIC18.43■□□□□ 0.54
CCNFP41002 TMEM177-204ENST00000424086 1738 ntAPPRIS P1 TSL 2 BASIC18.43■□□□□ 0.54
CCNFP41002 HOXA11-AS-205ENST00000522863 1723 ntTSL 5 BASIC18.43■□□□□ 0.54
CCNFP41002 CLDN9-201ENST00000445369 2050 ntAPPRIS P1 BASIC18.43■□□□□ 0.54
CCNFP41002 SH2D2A-201ENST00000368198 1599 ntAPPRIS ALT2 TSL 1 (best) BASIC18.43■□□□□ 0.54
CCNFP41002 FKBP8-206ENST00000596558 1756 ntAPPRIS ALT1 TSL 2 BASIC18.43■□□□□ 0.54
CCNFP41002 ARMC10-209ENST00000454559 2347 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 76.4 ms