Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 LINC01582-202ENST00000561215 452 ntTSL 4 BASIC20.63■□□□□ 0.89
CIITAP33076 IGFLR1-209ENST00000592537 1195 ntAPPRIS P2 TSL 1 (best) BASIC20.63■□□□□ 0.89
CIITAP33076 RABAC1-208ENST00000601078 728 ntTSL 3 BASIC20.63■□□□□ 0.89
CIITAP33076 RPL32-202ENST00000396953 1734 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
CIITAP33076 COLEC12-201ENST00000400256 5742 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
CIITAP33076 WWOX-214ENST00000566780 2482 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
CIITAP33076 MYOG-201ENST00000241651 1528 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
CIITAP33076 KCNQ5-202ENST00000355194 6566 ntAPPRIS ALT1 TSL 5 BASIC20.62■□□□□ 0.89
CIITAP33076 KCNQ5-206ENST00000402622 6596 ntAPPRIS ALT2 TSL 5 BASIC20.62■□□□□ 0.89
CIITAP33076 RPRD1A-201ENST00000357384 1850 ntAPPRIS P1 TSL 5 BASIC20.62■□□□□ 0.89
CIITAP33076 UNKL-202ENST00000301712 1431 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
CIITAP33076 HYOU1-212ENST00000532519 2162 ntTSL 5 BASIC20.62■□□□□ 0.89
CIITAP33076 PTPRN2-204ENST00000404321 1374 ntTSL 5 BASIC20.62■□□□□ 0.89
CIITAP33076 PACRGL-203ENST00000444671 1720 ntTSL 2 BASIC20.62■□□□□ 0.89
CIITAP33076 AMACR-205ENST00000426255 1316 ntTSL 2 BASIC20.62■□□□□ 0.89
CIITAP33076 SPATA20-226ENST00000619622 2769 ntAPPRIS P2 TSL 5 BASIC20.62■□□□□ 0.89
CIITAP33076 ZNF414-201ENST00000255616 1178 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
CIITAP33076 PNOC-201ENST00000301908 1200 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
CIITAP33076 FAM86B2-202ENST00000309608 806 ntTSL 3 BASIC20.62■□□□□ 0.89
CIITAP33076 SUSD4-203ENST00000344029 1056 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
CIITAP33076 LINC01770-202ENST00000430109 510 ntTSL 3 BASIC20.62■□□□□ 0.89
CIITAP33076 ATP5G2P1-201ENST00000433580 426 ntBASIC20.62■□□□□ 0.89
CIITAP33076 BX276092.5-203ENST00000456199 560 ntBASIC20.62■□□□□ 0.89
CIITAP33076 LINC01785-201ENST00000598042 1112 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
CIITAP33076 NPAP1P7-201ENST00000613027 823 ntBASIC20.62■□□□□ 0.89
CIITAP33076 PPP1R7-202ENST00000272983 1954 ntTSL 2 BASIC20.62■□□□□ 0.89
CIITAP33076 TMEM222-201ENST00000374076 1599 ntAPPRIS P2 TSL 1 (best) BASIC20.62■□□□□ 0.89
CIITAP33076 CRYL1-202ENST00000382812 1581 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
CIITAP33076 CARNS1-205ENST00000531040 2968 ntTSL 5 BASIC20.62■□□□□ 0.89
CIITAP33076 DPYSL4-202ENST00000368627 1545 ntTSL 5 BASIC20.62■□□□□ 0.89
CIITAP33076 GPATCH3-201ENST00000361720 2123 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
CIITAP33076 GNA12-201ENST00000275364 4378 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
CIITAP33076 AC138356.1-201ENST00000330539 2086 ntTSL 2 BASIC20.62■□□□□ 0.89
CIITAP33076 ADAP1-205ENST00000449296 2093 ntTSL 2 BASIC20.62■□□□□ 0.89
CIITAP33076 FAM189B-204ENST00000368368 2609 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
CIITAP33076 FLT1-209ENST00000639477 6337 ntTSL 5 BASIC20.61■□□□□ 0.89
CIITAP33076 SYTL1-208ENST00000543823 2229 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
CIITAP33076 NUMBL-202ENST00000540131 1931 ntAPPRIS ALT2 TSL 2 BASIC20.61■□□□□ 0.89
CIITAP33076 PDE9A-209ENST00000398227 1606 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
CIITAP33076 APAF1-210ENST00000551964 5444 ntAPPRIS P4 TSL 1 (best) BASIC20.61■□□□□ 0.89
CIITAP33076 MED30-201ENST00000297347 985 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
CIITAP33076 STARD3-201ENST00000336308 2132 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
CIITAP33076 KCNK7-202ENST00000342202 1283 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
CIITAP33076 MRPL20-201ENST00000344843 721 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
CIITAP33076 GNG5-202ENST00000370645 790 ntAPPRIS P1 TSL 2 BASIC20.61■□□□□ 0.89
CIITAP33076 ATP5J-203ENST00000400090 647 ntAPPRIS P1 TSL 2 BASIC20.61■□□□□ 0.89
CIITAP33076 AP002383.4-201ENST00000442518 975 ntBASIC20.61■□□□□ 0.89
CIITAP33076 DYDC2-206ENST00000444807 1173 ntAPPRIS P3 TSL 3 BASIC20.61■□□□□ 0.89
CIITAP33076 LINC01128-207ENST00000449005 874 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
CIITAP33076 TSSC2-201ENST00000450217 709 ntBASIC20.61■□□□□ 0.89
CIITAP33076 AC010655.4-201ENST00000462662 707 ntTSL 4 BASIC20.61■□□□□ 0.89
CIITAP33076 AK2-204ENST00000467905 880 ntAPPRIS ALT1 TSL 2 BASIC20.61■□□□□ 0.89
CIITAP33076 RAB6A-207ENST00000541588 758 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
CIITAP33076 AC138207.7-201ENST00000584499 668 ntTSL 5 BASIC20.61■□□□□ 0.89
CIITAP33076 FCGRT-210ENST00000596975 1054 ntTSL 5 BASIC20.61■□□□□ 0.89
CIITAP33076 AC090164.3-201ENST00000610780 2143 ntBASIC20.61■□□□□ 0.89
CIITAP33076 AHRR-204ENST00000506456 2350 ntTSL 2 BASIC20.61■□□□□ 0.89
CIITAP33076 MYC-207ENST00000621592 2366 ntAPPRIS ALT1 TSL 1 (best) BASIC20.61■□□□□ 0.89
CIITAP33076 KRT6C-201ENST00000252250 2289 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
CIITAP33076 KRT6B-201ENST00000252252 2282 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
CIITAP33076 CACNA1I-204ENST00000407673 5952 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
CIITAP33076 LINC00167-201ENST00000530583 1419 ntBASIC20.61■□□□□ 0.89
CIITAP33076 STAC3-201ENST00000332782 1656 ntAPPRIS P1 TSL 2 BASIC20.61■□□□□ 0.89
CIITAP33076 LRRC23-209ENST00000443597 1628 ntAPPRIS P4 TSL 1 (best) BASIC20.6■□□□□ 0.89
CIITAP33076 CDK10-202ENST00000353379 1798 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
CIITAP33076 NOTCH2NL-204ENST00000579793 1954 ntAPPRIS ALT2 TSL 2 BASIC20.6■□□□□ 0.89
CIITAP33076 TMEM171-201ENST00000287773 1247 ntAPPRIS ALT1 TSL 5 BASIC20.6■□□□□ 0.89
CIITAP33076 ISG15-201ENST00000379389 711 ntAPPRIS P2 TSL 1 (best) BASIC20.6■□□□□ 0.89
CIITAP33076 SSR4P1-202ENST00000429427 967 ntTSL 5 BASIC20.6■□□□□ 0.89
CIITAP33076 RN7SL606P-201ENST00000472779 293 ntBASIC20.6■□□□□ 0.89
CIITAP33076 AC106771.1-201ENST00000502209 372 ntTSL 2 BASIC20.6■□□□□ 0.89
CIITAP33076 MCRIP1-206ENST00000573478 1123 ntTSL 2 BASIC20.6■□□□□ 0.89
CIITAP33076 GTF3C5-202ENST00000372097 2406 ntAPPRIS P3 TSL 1 (best) BASIC20.6■□□□□ 0.89
CIITAP33076 CD55-206ENST00000391921 2433 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
CIITAP33076 RELL2-202ENST00000444782 2154 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
CIITAP33076 CDK13-202ENST00000340829 5066 ntAPPRIS ALT1 TSL 1 (best) BASIC20.6■□□□□ 0.89
CIITAP33076 ATRIP-201ENST00000320211 2590 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
CIITAP33076 SLC4A4-201ENST00000264485 5852 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
CIITAP33076 MID1IP1-202ENST00000378474 1889 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
CIITAP33076 PTX4-201ENST00000293922 1422 ntAPPRIS P2 TSL 1 (best) BASIC20.6■□□□□ 0.89
CIITAP33076 RASEF-202ENST00000376447 5576 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
CIITAP33076 RBFADN-201ENST00000562391 1350 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
CIITAP33076 ARPC1B-201ENST00000252725 1551 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
CIITAP33076 PHGDH-209ENST00000641074 1780 ntBASIC20.59■□□□□ 0.89
CIITAP33076 BSG-201ENST00000333511 1974 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
CIITAP33076 HBEGF-201ENST00000230990 2386 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
CIITAP33076 CAMKK2-207ENST00000404169 2116 ntAPPRIS P4 TSL 1 (best) BASIC20.59■□□□□ 0.89
CIITAP33076 POLD3-203ENST00000527458 2122 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
CIITAP33076 SLC39A4-201ENST00000276833 2297 ntTSL 2 BASIC20.59■□□□□ 0.89
CIITAP33076 ANKS3-202ENST00000446014 2265 ntTSL 5 BASIC20.59■□□□□ 0.89
CIITAP33076 SH2B3-201ENST00000341259 5406 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
CIITAP33076 EXOSC5-201ENST00000221233 1118 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
CIITAP33076 ELANE-201ENST00000263621 920 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
CIITAP33076 SPEG-204ENST00000396689 1274 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
CIITAP33076 CHCHD2P8-201ENST00000429873 447 ntBASIC20.59■□□□□ 0.89
CIITAP33076 MEAF6-205ENST00000448519 666 ntAPPRIS ALT1 TSL 1 (best) BASIC20.59■□□□□ 0.89
CIITAP33076 AC073111.4-202ENST00000486297 585 ntTSL 4 BASIC20.59■□□□□ 0.89
CIITAP33076 FOXP3-205ENST00000518685 1213 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
CIITAP33076 TBL1Y-203ENST00000383032 2407 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
CIITAP33076 TOR2A-205ENST00000463577 2211 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 30 ms