Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 C19orf25-210ENST00000591027 574 ntTSL 4 BASIC15.99■□□□□ 0.15
COL8A1P27658 AC010624.2-201ENST00000600998 575 ntTSL 5 BASIC15.99■□□□□ 0.15
COL8A1P27658 FAM87B-201ENST00000326734 1947 ntTSL 2 BASIC15.99■□□□□ 0.15
COL8A1P27658 TXNRD3-204ENST00000640433 1932 ntAPPRIS P4 TSL 1 (best) BASIC15.99■□□□□ 0.15
COL8A1P27658 VGF-201ENST00000249330 2575 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
COL8A1P27658 CXCR3-201ENST00000373691 1861 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
COL8A1P27658 ZNF821-202ENST00000425432 2000 ntAPPRIS P1 TSL 5 BASIC15.99■□□□□ 0.15
COL8A1P27658 CDK4-202ENST00000312990 1650 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
COL8A1P27658 INF2-204ENST00000398337 1689 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
COL8A1P27658 FDXR-214ENST00000581530 1827 ntAPPRIS P3 TSL 1 (best) BASIC15.98■□□□□ 0.15
COL8A1P27658 TP73-AS1-210ENST00000637775 1455 ntBASIC15.98■□□□□ 0.15
COL8A1P27658 TAPT1-201ENST00000405303 4591 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
COL8A1P27658 PTGES2-201ENST00000277462 1614 ntTSL 2 BASIC15.98■□□□□ 0.15
COL8A1P27658 LHX6-201ENST00000340587 3457 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
COL8A1P27658 TMEM104-202ENST00000417024 1781 ntTSL 2 BASIC15.98■□□□□ 0.15
COL8A1P27658 RAB5C-202ENST00000393860 1912 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
COL8A1P27658 CHTOP-204ENST00000368694 2096 ntAPPRIS P3 TSL 1 (best) BASIC15.98■□□□□ 0.15
COL8A1P27658 FRRS1L-201ENST00000561981 8197 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
COL8A1P27658 C19orf70-201ENST00000309324 896 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
COL8A1P27658 C18orf32-201ENST00000318240 1128 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
COL8A1P27658 FTMT-201ENST00000321339 879 ntAPPRIS P1 BASIC15.98■□□□□ 0.15
COL8A1P27658 RBM14-RBM4-201ENST00000412278 1566 ntAPPRIS P1 TSL 2 BASIC15.98■□□□□ 0.15
COL8A1P27658 SYS1-203ENST00000414310 795 ntTSL 3 BASIC15.98■□□□□ 0.15
COL8A1P27658 APCDD1L-AS1-201ENST00000420279 555 ntTSL 5 BASIC15.98■□□□□ 0.15
COL8A1P27658 PON3-203ENST00000427422 894 ntTSL 3 BASIC15.98■□□□□ 0.15
COL8A1P27658 COX20P2-201ENST00000452636 358 ntBASIC15.98■□□□□ 0.15
COL8A1P27658 HLA-J-202ENST00000469281 1241 ntBASIC15.98■□□□□ 0.15
COL8A1P27658 TIMM17B-208ENST00000495490 939 ntTSL 5 BASIC15.98■□□□□ 0.15
COL8A1P27658 OR7E14P-202ENST00000530490 1290 ntBASIC15.98■□□□□ 0.15
COL8A1P27658 FAU-209ENST00000531743 697 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
COL8A1P27658 AL109827.1-203ENST00000541176 872 ntAPPRIS P5 TSL 2 BASIC15.98■□□□□ 0.15
COL8A1P27658 COX5A-204ENST00000567270 579 ntTSL 3 BASIC15.98■□□□□ 0.15
COL8A1P27658 AC244153.1-202ENST00000617855 482 ntTSL 3 BASIC15.98■□□□□ 0.15
COL8A1P27658 KCNMA1-278ENST00000640141 5705 ntAPPRIS ALT2 TSL 5 BASIC15.98■□□□□ 0.15
COL8A1P27658 GATA5-201ENST00000252997 2595 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
COL8A1P27658 SARAF-214ENST00000545648 1976 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
COL8A1P27658 AC012615.6-201ENST00000593201 1697 ntTSL 2 BASIC15.98■□□□□ 0.15
COL8A1P27658 IQSEC1-201ENST00000273221 5279 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
COL8A1P27658 AC007192.1-201ENST00000593731 5142 ntAPPRIS P1 TSL 2 BASIC15.98■□□□□ 0.15
COL8A1P27658 SHCBP1L-201ENST00000367547 2317 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
COL8A1P27658 TEX264-215ENST00000611400 1488 ntAPPRIS P3 TSL 5 BASIC15.97■□□□□ 0.15
COL8A1P27658 MLST8-202ENST00000382450 1861 ntAPPRIS ALT1 TSL 2 BASIC15.97■□□□□ 0.15
COL8A1P27658 MLST8-215ENST00000564088 1861 ntAPPRIS P3 TSL 2 BASIC15.97■□□□□ 0.15
COL8A1P27658 SBNO2-201ENST00000361757 4923 ntAPPRIS P4 TSL 1 (best) BASIC15.97■□□□□ 0.15
COL8A1P27658 IQCJ-SCHIP1-204ENST00000485419 2445 ntAPPRIS ALT2 TSL 2 BASIC15.97■□□□□ 0.15
COL8A1P27658 LACTB-202ENST00000413507 2978 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
COL8A1P27658 MOB3C-202ENST00000319928 2822 ntAPPRIS P1 TSL 2 BASIC15.97■□□□□ 0.15
COL8A1P27658 DUT-201ENST00000331200 2147 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
COL8A1P27658 ANKRD13D-216ENST00000514166 2138 ntTSL 2 BASIC15.97■□□□□ 0.15
COL8A1P27658 TMEM131-201ENST00000186436 6640 ntAPPRIS P1 TSL 5 BASIC15.97■□□□□ 0.15
COL8A1P27658 ILDR2-203ENST00000469934 1950 ntAPPRIS ALT2 TSL 5 BASIC15.97■□□□□ 0.15
COL8A1P27658 NUDT11-201ENST00000375992 2385 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
COL8A1P27658 IRX4-208ENST00000622814 2398 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
COL8A1P27658 MRPS34-201ENST00000177742 1040 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
COL8A1P27658 CGREF1-201ENST00000260595 1177 ntAPPRIS ALT2 TSL 5 BASIC15.97■□□□□ 0.15
COL8A1P27658 ARMC12-201ENST00000288065 1169 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
COL8A1P27658 TM2D1-201ENST00000294613 1250 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
COL8A1P27658 AC093585.1-201ENST00000425183 428 ntTSL 2 BASIC15.97■□□□□ 0.15
COL8A1P27658 AP006288.1-201ENST00000446065 395 ntBASIC15.97■□□□□ 0.15
COL8A1P27658 CFL1-202ENST00000524553 860 ntTSL 2 BASIC15.97■□□□□ 0.15
COL8A1P27658 UNC93B6-202ENST00000528242 690 ntBASIC15.97■□□□□ 0.15
COL8A1P27658 EEF1D-238ENST00000531621 840 ntTSL 3 BASIC15.97■□□□□ 0.15
COL8A1P27658 PAX9-204ENST00000554201 1289 ntTSL 2 BASIC15.97■□□□□ 0.15
COL8A1P27658 RLN3-202ENST00000585987 541 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
COL8A1P27658 MTDHP5-201ENST00000598980 586 ntBASIC15.97■□□□□ 0.15
COL8A1P27658 TM2D1-212ENST00000606498 969 ntAPPRIS P1 TSL 5 BASIC15.97■□□□□ 0.15
COL8A1P27658 EBLN3P-205ENST00000629870 958 ntTSL 3 BASIC15.97■□□□□ 0.15
COL8A1P27658 AC233280.1-201ENST00000423600 1684 ntTSL 2 BASIC15.97■□□□□ 0.15
COL8A1P27658 P2RY6-210ENST00000542092 1674 ntAPPRIS P1 TSL 2 BASIC15.97■□□□□ 0.15
COL8A1P27658 AL109659.2-201ENST00000606809 1674 ntBASIC15.97■□□□□ 0.15
COL8A1P27658 DOK2-201ENST00000276420 1936 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
COL8A1P27658 AGAP3-202ENST00000397238 3225 ntAPPRIS P2 TSL 1 (best) BASIC15.97■□□□□ 0.15
COL8A1P27658 AVPR2-202ENST00000358927 1763 ntAPPRIS P1 TSL 5 BASIC15.97■□□□□ 0.15
COL8A1P27658 SMPDL3A-203ENST00000539041 1755 ntTSL 2 BASIC15.97■□□□□ 0.15
COL8A1P27658 ESYT3-201ENST00000289135 1356 ntTSL 5 BASIC15.97■□□□□ 0.15
COL8A1P27658 C17orf67-201ENST00000397861 2013 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
COL8A1P27658 CIRBP-202ENST00000413636 1606 ntTSL 2 BASIC15.97■□□□□ 0.15
COL8A1P27658 RALY-203ENST00000375114 6430 ntAPPRIS ALT2 TSL 1 (best) BASIC15.97■□□□□ 0.15
COL8A1P27658 AHCYL1-203ENST00000393614 4313 ntTSL 2 BASIC15.97■□□□□ 0.15
COL8A1P27658 TMEM62-201ENST00000260403 2771 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
COL8A1P27658 CAPN12-201ENST00000328867 2762 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
COL8A1P27658 ARHGAP8-201ENST00000336963 1487 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
COL8A1P27658 NTN5-201ENST00000270235 1836 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
COL8A1P27658 SNUPN-205ENST00000564644 1931 ntAPPRIS P1 TSL 2 BASIC15.96■□□□□ 0.15
COL8A1P27658 KRT13-202ENST00000336861 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC15.96■□□□□ 0.15
COL8A1P27658 ARID3C-201ENST00000378909 1411 ntAPPRIS P1 TSL 2 BASIC15.96■□□□□ 0.15
COL8A1P27658 HDGFL2-208ENST00000616600 2281 ntAPPRIS P3 TSL 1 (best) BASIC15.96■□□□□ 0.15
COL8A1P27658 LTBP1-203ENST00000404816 6333 ntAPPRIS P4 TSL 5 BASIC15.96■□□□□ 0.15
COL8A1P27658 CACNG7-201ENST00000222212 1016 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
COL8A1P27658 BRCC3-202ENST00000340647 1101 ntAPPRIS P2 TSL 2 BASIC15.96■□□□□ 0.15
COL8A1P27658 ENSA-205ENST00000361532 792 ntTSL 2 BASIC15.96■□□□□ 0.15
COL8A1P27658 CREM-211ENST00000374726 1207 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
COL8A1P27658 MIR770-201ENST00000390219 98 ntBASIC15.96■□□□□ 0.15
COL8A1P27658 ATP5G3-202ENST00000392541 842 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
COL8A1P27658 MRPL20-203ENST00000482352 1049 ntTSL 2 BASIC15.96■□□□□ 0.15
COL8A1P27658 SWI5-205ENST00000495313 466 ntAPPRIS ALT2 TSL 3 BASIC15.96■□□□□ 0.15
COL8A1P27658 C5orf49-202ENST00000509627 1020 ntAPPRIS ALT2 TSL 1 (best) BASIC15.96■□□□□ 0.15
COL8A1P27658 AC092118.1-202ENST00000568697 718 ntTSL 3 BASIC15.96■□□□□ 0.15
COL8A1P27658 PNMT-203ENST00000581428 677 ntTSL 2 BASIC15.96■□□□□ 0.15
COL8A1P27658 AC005336.2-201ENST00000593183 939 ntBASIC15.96■□□□□ 0.15
Retrieved 100 of 98,524 protein–RNA pairs in 25 ms