Protein–RNA interactions for Protein: P18887

XRCC1, DNA repair protein XRCC1, humanhuman

Predicted RBP Predictions only

Length 633 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
XRCC1P18887 DCTN5-208ENST00000568589 772 ntTSL 2 BASIC18.32■□□□□ 0.52
XRCC1P18887 UQCR11-201ENST00000585671 753 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
XRCC1P18887 BCL2L12-208ENST00000600947 633 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
XRCC1P18887 PNMA8A-203ENST00000602246 572 ntAPPRIS ALT2 TSL 4 BASIC18.32■□□□□ 0.52
XRCC1P18887 AL023973.1-201ENST00000624619 620 ntBASIC18.32■□□□□ 0.52
XRCC1P18887 PSTPIP1-203ENST00000558012 1896 ntAPPRIS P2 TSL 1 (best) BASIC18.32■□□□□ 0.52
XRCC1P18887 SLC39A7-201ENST00000374675 2153 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
XRCC1P18887 STRADB-202ENST00000392249 2190 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
XRCC1P18887 TMPRSS5-209ENST00000544634 1524 ntTSL 2 BASIC18.32■□□□□ 0.52
XRCC1P18887 NF2-203ENST00000353887 1845 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
XRCC1P18887 PTGIR-201ENST00000291294 2107 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
XRCC1P18887 ARHGAP23-222ENST00000622683 5964 ntAPPRIS P2 TSL 5 BASIC18.32■□□□□ 0.52
XRCC1P18887 SERPINA4-201ENST00000298841 1784 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
XRCC1P18887 CAPS-201ENST00000452990 1789 ntTSL 5 BASIC18.32■□□□□ 0.52
XRCC1P18887 OGFOD2-205ENST00000454694 1488 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
XRCC1P18887 RILPL2-201ENST00000280571 6141 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
XRCC1P18887 SH3BP2-202ENST00000435136 2318 ntAPPRIS P3 TSL 2 BASIC18.32■□□□□ 0.52
XRCC1P18887 PTPRK-218ENST00000525459 1722 ntTSL 2 BASIC18.32■□□□□ 0.52
XRCC1P18887 AC118553.2-203ENST00000639037 2590 ntAPPRIS P5 TSL 5 BASIC18.32■□□□□ 0.52
XRCC1P18887 TRAPPC2L-201ENST00000301021 2215 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
XRCC1P18887 PGM5-202ENST00000396396 3338 ntAPPRIS P1 TSL 2 BASIC18.31■□□□□ 0.52
XRCC1P18887 PCCA-202ENST00000376285 2494 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
XRCC1P18887 PLCL2-204ENST00000615277 4147 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
XRCC1P18887 RNFT2-202ENST00000319176 2180 ntTSL 5 BASIC18.31■□□□□ 0.52
XRCC1P18887 RNFT2-209ENST00000622220 2176 ntTSL 5 BASIC18.31■□□□□ 0.52
XRCC1P18887 FAM234A-203ENST00000399932 3213 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
XRCC1P18887 ARRB1-201ENST00000360025 1895 ntAPPRIS P3 TSL 1 (best) BASIC18.31■□□□□ 0.52
XRCC1P18887 SPAG16-209ENST00000447990 1330 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
XRCC1P18887 NFKBIZ-201ENST00000326151 2058 ntTSL 2 BASIC18.31■□□□□ 0.52
XRCC1P18887 HOXA9-201ENST00000343483 2060 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
XRCC1P18887 SOST-201ENST00000301691 2300 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
XRCC1P18887 GNAS-AS1-202ENST00000443966 2341 ntTSL 5 BASIC18.31■□□□□ 0.52
XRCC1P18887 GGCT-202ENST00000275428 1173 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
XRCC1P18887 YPEL3-201ENST00000398838 935 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
XRCC1P18887 HSD11B1L-205ENST00000422535 730 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
XRCC1P18887 HDAC11-AS1-201ENST00000424112 515 ntTSL 2 BASIC18.31■□□□□ 0.52
XRCC1P18887 ELAC2-212ENST00000578071 579 ntTSL 4 BASIC18.31■□□□□ 0.52
XRCC1P18887 BVES-AS1-203ENST00000580511 853 ntTSL 5 BASIC18.31■□□□□ 0.52
XRCC1P18887 GEMIN7-203ENST00000591607 848 ntAPPRIS P1 TSL 3 BASIC18.31■□□□□ 0.52
XRCC1P18887 KLK7-206ENST00000597707 1054 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
XRCC1P18887 SH2B1-202ENST00000337120 6043 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
XRCC1P18887 RUBCNL-203ENST00000378787 2731 ntTSL 2 BASIC18.31■□□□□ 0.52
XRCC1P18887 RPRM-201ENST00000325926 1471 ntAPPRIS P1 BASIC18.31■□□□□ 0.52
XRCC1P18887 KATNBL1P6-202ENST00000562413 1466 ntBASIC18.31■□□□□ 0.52
XRCC1P18887 FAM131A-202ENST00000340957 2421 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
XRCC1P18887 MBD1-206ENST00000382948 2434 ntAPPRIS P3 TSL 2 BASIC18.31■□□□□ 0.52
XRCC1P18887 MYO15B-232ENST00000610510 9195 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.52
XRCC1P18887 C12orf65-202ENST00000366329 1901 ntAPPRIS P2 TSL 2 BASIC18.31■□□□□ 0.52
XRCC1P18887 NR2F1-205ENST00000615873 1427 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
XRCC1P18887 SCYL1-203ENST00000420247 2583 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
XRCC1P18887 TCTN1-225ENST00000551590 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
XRCC1P18887 ARNT-202ENST00000358595 4887 ntAPPRIS P3 TSL 1 (best) BASIC18.31■□□□□ 0.52
XRCC1P18887 POLR2C-201ENST00000219252 2057 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
XRCC1P18887 MAPKAPK3-201ENST00000357955 2500 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
XRCC1P18887 KCNK4-205ENST00000538767 1389 ntTSL 2 BASIC18.3■□□□□ 0.52
XRCC1P18887 SEPT2-245ENST00000616972 3446 ntTSL 2 BASIC18.3■□□□□ 0.52
XRCC1P18887 TRIM47-201ENST00000254816 2266 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
XRCC1P18887 HPS3-202ENST00000460120 2745 ntTSL 2 BASIC18.3■□□□□ 0.52
XRCC1P18887 APP-202ENST00000348990 3355 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
XRCC1P18887 SLC39A1-209ENST00000537590 2022 ntTSL 2 BASIC18.3■□□□□ 0.52
XRCC1P18887 ZNF865-201ENST00000568956 4005 ntAPPRIS P1 TSL 2 BASIC18.3■□□□□ 0.52
XRCC1P18887 KAT2A-201ENST00000225916 3109 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
XRCC1P18887 TUBA4A-201ENST00000248437 2162 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
XRCC1P18887 CKMT1A-202ENST00000413453 1911 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
XRCC1P18887 TSPAN14-202ENST00000341863 1037 ntTSL 5 BASIC18.3■□□□□ 0.52
XRCC1P18887 CDHR4-201ENST00000343366 1188 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
XRCC1P18887 LCE3D-201ENST00000368787 613 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
XRCC1P18887 LINC01063-201ENST00000441644 348 ntTSL 3 BASIC18.3■□□□□ 0.52
XRCC1P18887 MAP3K13-213ENST00000454237 526 ntTSL 3 BASIC18.3■□□□□ 0.52
XRCC1P18887 AC092647.4-201ENST00000457211 535 ntBASIC18.3■□□□□ 0.52
XRCC1P18887 AC004080.5-201ENST00000498652 368 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
XRCC1P18887 MTHFS-202ENST00000559722 948 ntTSL 2 BASIC18.3■□□□□ 0.52
XRCC1P18887 PKMYT1-203ENST00000431515 2308 ntTSL 2 BASIC18.3■□□□□ 0.52
XRCC1P18887 ADPGK-AS1-201ENST00000563592 2730 ntTSL 2 BASIC18.3■□□□□ 0.52
XRCC1P18887 POLI-207ENST00000579434 2705 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
XRCC1P18887 PROSER2-201ENST00000277570 3333 ntAPPRIS P2 TSL 1 (best) BASIC18.3■□□□□ 0.52
XRCC1P18887 ZCCHC24-202ENST00000372336 4933 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
XRCC1P18887 TRPM4-213ENST00000599628 1829 ntTSL 2 BASIC18.3■□□□□ 0.52
XRCC1P18887 LGI2-201ENST00000382114 6428 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
XRCC1P18887 ELAC2-202ENST00000395962 2924 ntTSL 2 BASIC18.29■□□□□ 0.52
XRCC1P18887 TTLL8-201ENST00000266182 2505 ntAPPRIS ALT2 TSL 5 BASIC18.29■□□□□ 0.52
XRCC1P18887 PAX1-205ENST00000613128 5352 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
XRCC1P18887 AGAP2-AS1-201ENST00000542466 1500 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
XRCC1P18887 FBXL18-205ENST00000620087 2076 ntTSL 5 BASIC18.29■□□□□ 0.52
XRCC1P18887 PIEZO1-202ENST00000327397 1246 ntTSL 2 BASIC18.29■□□□□ 0.52
XRCC1P18887 HIST2H2AB-201ENST00000331128 393 ntAPPRIS P1 BASIC18.29■□□□□ 0.52
XRCC1P18887 GAD2-202ENST00000376248 680 ntTSL 5 BASIC18.29■□□□□ 0.52
XRCC1P18887 IMP3-202ENST00000403490 1237 ntAPPRIS P1 BASIC18.29■□□□□ 0.52
XRCC1P18887 SAPCD2P2-201ENST00000431719 1174 ntBASIC18.29■□□□□ 0.52
XRCC1P18887 CCNG1-211ENST00000512163 919 ntTSL 2 BASIC18.29■□□□□ 0.52
XRCC1P18887 AZIN1-AS1-214ENST00000522850 473 ntTSL 3 BASIC18.29■□□□□ 0.52
XRCC1P18887 FAM104A-205ENST00000581110 512 ntTSL 2 BASIC18.29■□□□□ 0.52
XRCC1P18887 MIR3180-5-201ENST00000583743 153 ntBASIC18.29■□□□□ 0.52
XRCC1P18887 ATP5D-207ENST00000591660 637 ntAPPRIS P1 TSL 3 BASIC18.29■□□□□ 0.52
XRCC1P18887 TRAPPC12-201ENST00000324266 2508 ntAPPRIS P2 TSL 1 (best) BASIC18.29■□□□□ 0.52
XRCC1P18887 PARD3-205ENST00000374773 3420 ntTSL 5 BASIC18.29■□□□□ 0.52
XRCC1P18887 RARRES1-201ENST00000237696 1952 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
XRCC1P18887 ACTG1-201ENST00000331925 1994 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
XRCC1P18887 CRADD-202ENST00000542893 1403 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
XRCC1P18887 PFN2-203ENST00000452853 1780 ntAPPRIS ALT1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 22.3 ms