Protein–RNA interactions for Protein: P08670

VIM, Vimentin, humanhuman

Known RBP Predictions only

Length 466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VIMP08670 SYT3-202ENST00000593901 2836 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
VIMP08670 PLEKHG6-203ENST00000396988 2963 ntAPPRIS P1 TSL 2 BASIC18.45■□□□□ 0.54
VIMP08670 CDK19-202ENST00000368911 6246 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
VIMP08670 KDM4B-211ENST00000611640 5703 ntTSL 5 BASIC18.45■□□□□ 0.54
VIMP08670 ZDHHC20-209ENST00000542645 5315 ntAPPRIS ALT2 TSL 2 BASIC18.45■□□□□ 0.54
VIMP08670 RAD1-202ENST00000341754 2341 ntAPPRIS P1 TSL 5 BASIC18.45■□□□□ 0.54
VIMP08670 JPH2-201ENST00000342272 1923 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
VIMP08670 KDM5C-202ENST00000375379 5245 ntAPPRIS ALT2 TSL 5 BASIC18.45■□□□□ 0.54
VIMP08670 ARHGEF40-201ENST00000298694 5919 ntAPPRIS P1 TSL 2 BASIC18.45■□□□□ 0.54
VIMP08670 AC120049.1-201ENST00000592638 2065 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
VIMP08670 YTHDF3-212ENST00000621413 2370 ntTSL 5 BASIC18.45■□□□□ 0.54
VIMP08670 SCNN1D-201ENST00000325425 2679 ntAPPRIS ALT2 TSL 1 (best) BASIC18.45■□□□□ 0.54
VIMP08670 SLC22A11-202ENST00000377581 1975 ntTSL 5 BASIC18.45■□□□□ 0.54
VIMP08670 GAR1-201ENST00000226796 1224 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
VIMP08670 HIST2H2AC-201ENST00000331380 390 ntAPPRIS P1 BASIC18.45■□□□□ 0.54
VIMP08670 AC016769.1-201ENST00000409132 1010 ntBASIC18.45■□□□□ 0.54
VIMP08670 IFT74-203ENST00000433700 2119 ntAPPRIS P1 TSL 5 BASIC18.45■□□□□ 0.54
VIMP08670 AC093787.1-201ENST00000450396 207 ntBASIC18.45■□□□□ 0.54
VIMP08670 BX890604.1-207ENST00000486571 904 ntTSL 5 BASIC18.45■□□□□ 0.54
VIMP08670 TPD52L1-207ENST00000527711 999 ntTSL 2 BASIC18.45■□□□□ 0.54
VIMP08670 AC137761.2-201ENST00000561729 223 ntBASIC18.45■□□□□ 0.54
VIMP08670 AC145350.3-201ENST00000569033 163 ntBASIC18.45■□□□□ 0.54
VIMP08670 AC008105.3-201ENST00000586376 844 ntTSL 3 BASIC18.45■□□□□ 0.54
VIMP08670 VIM-AS1-202ENST00000605833 918 ntTSL 3 BASIC18.45■□□□□ 0.54
VIMP08670 SYTL3-201ENST00000297239 2292 ntAPPRIS ALT1 TSL 1 (best) BASIC18.45■□□□□ 0.54
VIMP08670 LINC02028-204ENST00000449350 1419 ntTSL 3 BASIC18.45■□□□□ 0.54
VIMP08670 AC007383.3-201ENST00000453039 1411 ntTSL 3 BASIC18.45■□□□□ 0.54
VIMP08670 KXD1-203ENST00000540691 1592 ntAPPRIS P1 TSL 3 BASIC18.45■□□□□ 0.54
VIMP08670 SOCS2-212ENST00000622746 2881 ntAPPRIS P1 TSL 3 BASIC18.45■□□□□ 0.54
VIMP08670 SLC23A3-207ENST00000455516 2048 ntTSL 2 BASIC18.45■□□□□ 0.54
VIMP08670 TBKBP1-204ENST00000622396 2010 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
VIMP08670 SLCO5A1-206ENST00000530307 2630 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
VIMP08670 AL079303.2-201ENST00000555107 2613 ntTSL 3 BASIC18.45■□□□□ 0.54
VIMP08670 PHB2-201ENST00000399433 1308 ntAPPRIS ALT1 TSL 2 BASIC18.45■□□□□ 0.54
VIMP08670 NAAA-206ENST00000507956 1300 ntAPPRIS ALT2 TSL 2 BASIC18.45■□□□□ 0.54
VIMP08670 TUFM-201ENST00000313511 2071 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
VIMP08670 LAMC1-201ENST00000258341 7889 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
VIMP08670 SMO-201ENST00000249373 3738 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
VIMP08670 DCAF12L2-201ENST00000360028 2599 ntAPPRIS P1 BASIC18.44■□□□□ 0.54
VIMP08670 AMN1-201ENST00000281471 2110 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
VIMP08670 SLC25A23-202ENST00000301454 3425 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
VIMP08670 AC096719.1-201ENST00000510705 1874 ntTSL 5 BASIC18.44■□□□□ 0.54
VIMP08670 ADRB3-201ENST00000345060 2950 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
VIMP08670 RPL32-202ENST00000396953 1734 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
VIMP08670 AHR-201ENST00000242057 6276 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
VIMP08670 C18orf21-205ENST00000592875 1581 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
VIMP08670 KRT8P45-201ENST00000414328 1447 ntBASIC18.44■□□□□ 0.54
VIMP08670 ENTPD5-206ENST00000556242 1437 ntTSL 5 BASIC18.44■□□□□ 0.54
VIMP08670 MFF-205ENST00000354503 1085 ntTSL 2 BASIC18.44■□□□□ 0.54
VIMP08670 LCE2A-201ENST00000368779 592 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
VIMP08670 TSPAN2-201ENST00000369515 793 ntTSL 3 BASIC18.44■□□□□ 0.54
VIMP08670 C20orf196-202ENST00000378979 585 ntTSL 2 BASIC18.44■□□□□ 0.54
VIMP08670 MPRIP-203ENST00000395806 527 ntTSL 3 BASIC18.44■□□□□ 0.54
VIMP08670 NOXO1-203ENST00000397280 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC18.44■□□□□ 0.54
VIMP08670 APTR-203ENST00000430801 583 ntTSL 5 BASIC18.44■□□□□ 0.54
VIMP08670 NOXO1-205ENST00000566005 1144 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
VIMP08670 COX4I1-216ENST00000568794 794 ntTSL 5 BASIC18.44■□□□□ 0.54
VIMP08670 CIRBP-211ENST00000586773 942 ntAPPRIS ALT1 TSL 2 BASIC18.44■□□□□ 0.54
VIMP08670 ATP6V0E2-211ENST00000606024 893 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
VIMP08670 DUS1L-201ENST00000306796 2068 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
VIMP08670 BLCAP-201ENST00000373537 2073 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
VIMP08670 HARS-201ENST00000307633 1780 ntTSL 2 BASIC18.44■□□□□ 0.54
VIMP08670 RAB35-201ENST00000229340 2945 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
VIMP08670 AL023806.1-201ENST00000603994 1649 ntBASIC18.44■□□□□ 0.54
VIMP08670 KCNE3-201ENST00000310128 3143 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
VIMP08670 AC018695.7-201ENST00000624587 2492 ntBASIC18.44■□□□□ 0.54
VIMP08670 ZNF454-201ENST00000320129 2332 ntAPPRIS P1 TSL 2 BASIC18.44■□□□□ 0.54
VIMP08670 PYCR3-201ENST00000220966 2678 ntAPPRIS P2 TSL 1 (best) BASIC18.44■□□□□ 0.54
VIMP08670 PPIF-201ENST00000225174 2190 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
VIMP08670 ANXA3-201ENST00000264908 1657 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
VIMP08670 TMSB4Y-201ENST00000284856 1669 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
VIMP08670 MARVELD3-202ENST00000299952 2214 ntAPPRIS ALT2 TSL 2 BASIC18.43■□□□□ 0.54
VIMP08670 ACADVL-205ENST00000543245 2227 ntTSL 2 BASIC18.43■□□□□ 0.54
VIMP08670 CRK-204ENST00000574295 1391 ntTSL 5 BASIC18.43■□□□□ 0.54
VIMP08670 CLDN5-204ENST00000618236 1374 ntAPPRIS P1 BASIC18.43■□□□□ 0.54
VIMP08670 TSC22D3-203ENST00000372383 2266 ntTSL 2 BASIC18.43■□□□□ 0.54
VIMP08670 SH3RF1-201ENST00000284637 5272 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
VIMP08670 ARSI-201ENST00000328668 3161 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
VIMP08670 NELFA-216ENST00000542778 2465 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
VIMP08670 TTC8-202ENST00000345383 2329 ntTSL 5 BASIC18.43■□□□□ 0.54
VIMP08670 ZCCHC23-201ENST00000500526 1951 ntTSL 2 BASIC18.43■□□□□ 0.54
VIMP08670 MFSD2A-201ENST00000372809 2173 ntTSL 2 BASIC18.43■□□□□ 0.54
VIMP08670 SPSB1-203ENST00000377399 1007 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
VIMP08670 C19orf24-201ENST00000409293 983 ntAPPRIS P1 TSL 2 BASIC18.43■□□□□ 0.54
VIMP08670 NDUFS3-207ENST00000529276 558 ntTSL 2 BASIC18.43■□□□□ 0.54
VIMP08670 MAX-217ENST00000557277 728 ntTSL 3 BASIC18.43■□□□□ 0.54
VIMP08670 ZNF263-205ENST00000574253 1139 ntTSL 2 BASIC18.43■□□□□ 0.54
VIMP08670 RAP2CP1-201ENST00000605103 478 ntBASIC18.43■□□□□ 0.54
VIMP08670 AC011767.1-201ENST00000617410 1153 ntBASIC18.43■□□□□ 0.54
VIMP08670 MAPK14-210ENST00000622903 1003 ntTSL 5 BASIC18.43■□□□□ 0.54
VIMP08670 ALOX12-201ENST00000251535 2358 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
VIMP08670 DKC1-201ENST00000369550 2577 ntAPPRIS P3 TSL 1 (best) BASIC18.43■□□□□ 0.54
VIMP08670 C18orf8-208ENST00000590868 2002 ntTSL 2 BASIC18.43■□□□□ 0.54
VIMP08670 AGER-207ENST00000375076 1492 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
VIMP08670 SGPP1-201ENST00000247225 3312 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
VIMP08670 MUM1-216ENST00000627377 2235 ntAPPRIS ALT2 TSL 5 BASIC18.43■□□□□ 0.54
VIMP08670 ABCC3-202ENST00000427699 1881 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
VIMP08670 LUC7L-202ENST00000337351 2097 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
VIMP08670 TREX2-201ENST00000330912 2262 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
VIMP08670 PCCB-216ENST00000483687 1727 ntTSL 3 BASIC18.43■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 23.9 ms