Protein–RNA interactions for Protein: O96005

CLPTM1, Cleft lip and palate transmembrane protein 1, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLPTM1O96005 BRWD1-AS2-201ENST00000603064 1028 ntBASIC17.34■□□□□ 0.37
CLPTM1O96005 INO80E-214ENST00000620599 515 ntTSL 2 BASIC17.34■□□□□ 0.37
CLPTM1O96005 KIFC2-201ENST00000301332 3646 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
CLPTM1O96005 ARHGAP6-202ENST00000337414 5117 ntAPPRIS P4 TSL 1 (best) BASIC17.34■□□□□ 0.37
CLPTM1O96005 LINC00336-201ENST00000477984 2107 ntTSL 2 BASIC17.33■□□□□ 0.37
CLPTM1O96005 STARD3-209ENST00000544210 1666 ntTSL 2 BASIC17.33■□□□□ 0.37
CLPTM1O96005 PIP4K2C-202ENST00000422156 1558 ntTSL 2 BASIC17.33■□□□□ 0.37
CLPTM1O96005 HLA-G-201ENST00000360323 1427 ntAPPRIS P2 BASIC17.33■□□□□ 0.36
CLPTM1O96005 IFI27L2-201ENST00000238609 511 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
CLPTM1O96005 SPATA25-201ENST00000372519 757 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
CLPTM1O96005 AC008667.2-201ENST00000504413 469 ntTSL 3 BASIC17.33■□□□□ 0.36
CLPTM1O96005 IGFBP6-203ENST00000548547 1177 ntAPPRIS ALT2 TSL 5 BASIC17.33■□□□□ 0.36
CLPTM1O96005 MIR4651-201ENST00000582622 73 ntBASIC17.33■□□□□ 0.36
CLPTM1O96005 CNST-202ENST00000366512 2422 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
CLPTM1O96005 TMEM130-202ENST00000345589 2261 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
CLPTM1O96005 PTPN5-202ENST00000396166 2299 ntTSL 2 BASIC17.33■□□□□ 0.36
CLPTM1O96005 IFRD1-202ENST00000403825 2290 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
CLPTM1O96005 ZNF619-205ENST00000456778 2192 ntTSL 2 BASIC17.33■□□□□ 0.36
CLPTM1O96005 TSC2-222ENST00000568454 5434 ntAPPRIS ALT2 TSL 2 BASIC17.33■□□□□ 0.36
CLPTM1O96005 YAP1-209ENST00000537274 5350 ntAPPRIS ALT2 TSL 5 BASIC17.33■□□□□ 0.36
CLPTM1O96005 ADAM10-205ENST00000461408 1932 ntTSL 2 BASIC17.33■□□□□ 0.36
CLPTM1O96005 PDE1C-201ENST00000321453 2898 ntAPPRIS ALT1 TSL 2 BASIC17.33■□□□□ 0.36
CLPTM1O96005 C1orf159-205ENST00000421241 1841 ntAPPRIS P3 TSL 2 BASIC17.33■□□□□ 0.36
CLPTM1O96005 TMEFF2-201ENST00000272771 2604 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
CLPTM1O96005 PLA2G12A-201ENST00000243501 5226 ntAPPRIS P2 TSL 1 (best) BASIC17.33■□□□□ 0.36
CLPTM1O96005 MGEA5-202ENST00000361464 5155 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
CLPTM1O96005 CYP2D7-203ENST00000433992 1740 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
CLPTM1O96005 SCYL1-202ENST00000279270 1659 ntTSL 5 BASIC17.32■□□□□ 0.36
CLPTM1O96005 AC013269.1-201ENST00000409259 1653 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CLPTM1O96005 TISP43-206ENST00000623376 1653 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
CLPTM1O96005 SNX11-203ENST00000452859 1601 ntTSL 2 BASIC17.32■□□□□ 0.36
CLPTM1O96005 FAM46A-201ENST00000320172 5609 ntAPPRIS P2 TSL 1 (best) BASIC17.32■□□□□ 0.36
CLPTM1O96005 ZBTB16-202ENST00000392996 2287 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CLPTM1O96005 MARVELD3-202ENST00000299952 2214 ntAPPRIS ALT2 TSL 2 BASIC17.32■□□□□ 0.36
CLPTM1O96005 BCS1L-201ENST00000359273 1454 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CLPTM1O96005 C12orf29-201ENST00000356891 2919 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CLPTM1O96005 SERPINB6-204ENST00000380529 1370 ntAPPRIS P1 TSL 2 BASIC17.32■□□□□ 0.36
CLPTM1O96005 CRK-204ENST00000574295 1391 ntTSL 5 BASIC17.32■□□□□ 0.36
CLPTM1O96005 PRODH-205ENST00000420436 2034 ntAPPRIS ALT2 TSL 2 BASIC17.32■□□□□ 0.36
CLPTM1O96005 DBNL-219ENST00000490734 2004 ntTSL 2 BASIC17.32■□□□□ 0.36
CLPTM1O96005 BTBD3-201ENST00000254977 4686 ntAPPRIS ALT1 TSL 2 BASIC17.32■□□□□ 0.36
CLPTM1O96005 PRAF2-202ENST00000553851 1334 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CLPTM1O96005 MEA1-201ENST00000244711 1089 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CLPTM1O96005 CKLF-CMTM1-204ENST00000532838 587 ntAPPRIS ALT2 TSL 4 BASIC17.32■□□□□ 0.36
CLPTM1O96005 AL356020.1-201ENST00000554235 1076 ntTSL 5 BASIC17.32■□□□□ 0.36
CLPTM1O96005 ADAM11-203ENST00000535346 2529 ntTSL 2 BASIC17.32■□□□□ 0.36
CLPTM1O96005 ERBB2-205ENST00000578199 2526 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
CLPTM1O96005 MTCL1-205ENST00000517570 6009 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
CLPTM1O96005 VSX2-201ENST00000261980 2995 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CLPTM1O96005 SLCO6A1-202ENST00000389019 2340 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
CLPTM1O96005 PEX6-202ENST00000304611 3478 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CLPTM1O96005 RNH1-206ENST00000438658 1725 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CLPTM1O96005 PIGP-207ENST00000464265 3437 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
CLPTM1O96005 TBC1D28-201ENST00000345096 2789 ntAPPRIS P1 TSL 2 BASIC17.32■□□□□ 0.36
CLPTM1O96005 GDF6-201ENST00000287020 3701 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CLPTM1O96005 SDHA-213ENST00000510361 2148 ntTSL 2 BASIC17.32■□□□□ 0.36
CLPTM1O96005 WDR41-208ENST00000507029 1553 ntTSL 2 BASIC17.32■□□□□ 0.36
CLPTM1O96005 AIDA-201ENST00000340020 3008 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CLPTM1O96005 FER1L4-210ENST00000615531 5998 ntBASIC17.31■□□□□ 0.36
CLPTM1O96005 SARAF-214ENST00000545648 1976 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
CLPTM1O96005 MIF-AS1-201ENST00000406213 1476 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
CLPTM1O96005 SLC3A2-201ENST00000338663 1904 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
CLPTM1O96005 SGPP1-201ENST00000247225 3312 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CLPTM1O96005 RFXANK-201ENST00000303088 1407 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CLPTM1O96005 THOP1-205ENST00000586677 1872 ntTSL 2 BASIC17.31■□□□□ 0.36
CLPTM1O96005 BCL2-202ENST00000398117 7461 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CLPTM1O96005 PYURF-201ENST00000273968 1361 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CLPTM1O96005 TMEM119-201ENST00000392806 2707 ntAPPRIS P2 TSL 1 (best) BASIC17.31■□□□□ 0.36
CLPTM1O96005 NFATC2-205ENST00000609507 2662 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
CLPTM1O96005 KATNAL2-208ENST00000592005 1348 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
CLPTM1O96005 BCAT2-208ENST00000598162 1329 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
CLPTM1O96005 AC083805.3-201ENST00000619560 1315 ntTSL 3 BASIC17.31■□□□□ 0.36
CLPTM1O96005 CKLF-201ENST00000264001 669 ntAPPRIS P4 TSL 1 (best) BASIC17.31■□□□□ 0.36
CLPTM1O96005 LRR1-202ENST00000318317 957 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
CLPTM1O96005 AC093620.1-201ENST00000342963 583 ntTSL 3 BASIC17.31■□□□□ 0.36
CLPTM1O96005 CHPF-202ENST00000373891 1079 ntTSL 2 BASIC17.31■□□□□ 0.36
CLPTM1O96005 N4BP2L1-203ENST00000380133 903 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CLPTM1O96005 MCHR1-202ENST00000381433 1219 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
CLPTM1O96005 NCBP2-207ENST00000452404 1133 ntTSL 2 BASIC17.31■□□□□ 0.36
CLPTM1O96005 DCTPP1-205ENST00000568973 878 ntTSL 2 BASIC17.31■□□□□ 0.36
CLPTM1O96005 HLA-B-256ENST00000639848 1089 ntBASIC17.31■□□□□ 0.36
CLPTM1O96005 KCNK17-201ENST00000373231 1658 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
CLPTM1O96005 C21orf58-205ENST00000397683 1674 ntAPPRIS ALT2 TSL 2 BASIC17.31■□□□□ 0.36
CLPTM1O96005 SYT15-202ENST00000374323 6428 ntTSL 2 BASIC17.31■□□□□ 0.36
CLPTM1O96005 JPH2-202ENST00000372980 4787 ntAPPRIS P1 TSL 5 BASIC17.31■□□□□ 0.36
CLPTM1O96005 NSD3-201ENST00000316985 3995 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
CLPTM1O96005 DPF2-205ENST00000528416 2799 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CLPTM1O96005 PRSS36-207ENST00000569305 2723 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
CLPTM1O96005 SLC29A1-208ENST00000393844 2326 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CLPTM1O96005 CLPTM1-203ENST00000546079 2342 ntTSL 2 BASIC17.31■□□□□ 0.36
CLPTM1O96005 CNTRL-208ENST00000373865 1917 ntTSL 5 BASIC17.31■□□□□ 0.36
CLPTM1O96005 ANKRD29-208ENST00000592179 3361 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CLPTM1O96005 ARHGEF16-202ENST00000378373 2211 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
CLPTM1O96005 KCNE5-201ENST00000372101 1473 ntAPPRIS P1 BASIC17.31■□□□□ 0.36
CLPTM1O96005 MAP4K3-202ENST00000341681 4271 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
CLPTM1O96005 HNRNPF-204ENST00000443950 2755 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CLPTM1O96005 CDK4-201ENST00000257904 2076 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CLPTM1O96005 HCK-202ENST00000375852 2082 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
CLPTM1O96005 LARP4B-211ENST00000612396 8546 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
CLPTM1O96005 SLC52A1-201ENST00000254853 2377 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 24.9 ms