Protein–RNA interactions for Protein: H3BSU7

TMX2-CTNND1, TMX2-CTNND1 readthrough (NMD candidate), humanhuman

Predictions only

Length 103 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TMX2-CTNND1H3BSU7 BEX1-201ENST00000372728 864 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
TMX2-CTNND1H3BSU7 TBC1D7-205ENST00000379307 1084 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
TMX2-CTNND1H3BSU7 UFSP1-201ENST00000388761 996 ntAPPRIS P1 BASIC18.01■□□□□ 0.47
TMX2-CTNND1H3BSU7 RASGRP2-208ENST00000394428 444 ntTSL 2 BASIC18.01■□□□□ 0.47
TMX2-CTNND1H3BSU7 ATP5J-203ENST00000400090 647 ntAPPRIS P1 TSL 2 BASIC18.01■□□□□ 0.47
TMX2-CTNND1H3BSU7 SDHD-206ENST00000528182 754 ntTSL 3 BASIC18.01■□□□□ 0.47
TMX2-CTNND1H3BSU7 LINC01582-202ENST00000561215 452 ntTSL 4 BASIC18.01■□□□□ 0.47
TMX2-CTNND1H3BSU7 AP2S1-204ENST00000597020 707 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
TMX2-CTNND1H3BSU7 SMN2-213ENST00000614240 804 ntAPPRIS ALT2 TSL 5 BASIC18.01■□□□□ 0.47
TMX2-CTNND1H3BSU7 DHRS4L2-211ENST00000621761 1049 ntTSL 5 BASIC18.01■□□□□ 0.47
TMX2-CTNND1H3BSU7 AL365255.1-201ENST00000637702 847 ntTSL 2 BASIC18.01■□□□□ 0.47
TMX2-CTNND1H3BSU7 NAPRT-202ENST00000426292 1654 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
TMX2-CTNND1H3BSU7 FKBP8-206ENST00000596558 1756 ntAPPRIS ALT1 TSL 2 BASIC18.01■□□□□ 0.47
TMX2-CTNND1H3BSU7 NEUROD2-201ENST00000302584 2041 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
TMX2-CTNND1H3BSU7 PIF1-205ENST00000559239 2677 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
TMX2-CTNND1H3BSU7 RNPEPL1-201ENST00000270357 5658 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
TMX2-CTNND1H3BSU7 PDLIM4-201ENST00000253754 2282 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
TMX2-CTNND1H3BSU7 GAS2L1P1-201ENST00000420145 1480 ntBASIC18.01■□□□□ 0.47
TMX2-CTNND1H3BSU7 MRPL3-202ENST00000425847 1457 ntTSL 2 BASIC18.01■□□□□ 0.47
TMX2-CTNND1H3BSU7 TCEA1-208ENST00000521604 2858 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
TMX2-CTNND1H3BSU7 AC036111.1-201ENST00000533973 1582 ntBASIC18■□□□□ 0.47
TMX2-CTNND1H3BSU7 ZNF846-205ENST00000588267 1943 ntTSL 2 BASIC18■□□□□ 0.47
TMX2-CTNND1H3BSU7 SEPT9-236ENST00000591088 1691 ntAPPRIS ALT2 TSL 2 BASIC18■□□□□ 0.47
TMX2-CTNND1H3BSU7 ERVK13-1-203ENST00000564340 1449 ntTSL 1 (best) BASIC18■□□□□ 0.47
TMX2-CTNND1H3BSU7 PARVG-206ENST00000444313 3523 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
TMX2-CTNND1H3BSU7 RELB-201ENST00000221452 2294 ntAPPRIS P2 TSL 1 (best) BASIC18■□□□□ 0.47
TMX2-CTNND1H3BSU7 NCK2-205ENST00000451463 1795 ntTSL 2 BASIC18■□□□□ 0.47
TMX2-CTNND1H3BSU7 HDAC4-201ENST00000345617 8976 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
TMX2-CTNND1H3BSU7 STRA8-201ENST00000275764 993 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
TMX2-CTNND1H3BSU7 HOPX-201ENST00000317745 1129 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
TMX2-CTNND1H3BSU7 KRT8P26-201ENST00000534154 1276 ntBASIC18■□□□□ 0.47
TMX2-CTNND1H3BSU7 ANKRD34C-AS1-201ENST00000557790 594 ntTSL 3 BASIC18■□□□□ 0.47
TMX2-CTNND1H3BSU7 NAA38-203ENST00000575071 553 ntTSL 2 BASIC18■□□□□ 0.47
TMX2-CTNND1H3BSU7 AC012366.1-201ENST00000615411 473 ntTSL 5 BASIC18■□□□□ 0.47
TMX2-CTNND1H3BSU7 IFNL4-202ENST00000616270 1132 ntAPPRIS ALT2 TSL 1 (best) BASIC18■□□□□ 0.47
TMX2-CTNND1H3BSU7 SPEG-225ENST00000617028 815 ntTSL 5 BASIC18■□□□□ 0.47
TMX2-CTNND1H3BSU7 AC092902.2-222ENST00000626312 568 ntTSL 5 BASIC18■□□□□ 0.47
TMX2-CTNND1H3BSU7 CLN3-259ENST00000637551 1083 ntTSL 5 BASIC18■□□□□ 0.47
TMX2-CTNND1H3BSU7 CACNA1A-246ENST00000637736 8340 ntAPPRIS ALT2 TSL 5 BASIC18■□□□□ 0.47
TMX2-CTNND1H3BSU7 CHMP4A-201ENST00000347519 1393 ntTSL 1 (best) BASIC18■□□□□ 0.47
TMX2-CTNND1H3BSU7 PCCB-216ENST00000483687 1727 ntTSL 3 BASIC18■□□□□ 0.47
TMX2-CTNND1H3BSU7 UBE2K-203ENST00000445950 2175 ntTSL 1 (best) BASIC18■□□□□ 0.47
TMX2-CTNND1H3BSU7 FAM87B-201ENST00000326734 1947 ntTSL 2 BASIC18■□□□□ 0.47
TMX2-CTNND1H3BSU7 AC093525.10-201ENST00000625130 1569 ntBASIC18■□□□□ 0.47
TMX2-CTNND1H3BSU7 KCNQ5-202ENST00000355194 6566 ntAPPRIS ALT1 TSL 5 BASIC18■□□□□ 0.47
TMX2-CTNND1H3BSU7 KCNQ5-206ENST00000402622 6596 ntAPPRIS ALT2 TSL 5 BASIC18■□□□□ 0.47
TMX2-CTNND1H3BSU7 AC087457.1-201ENST00000503496 2727 ntTSL 2 BASIC18■□□□□ 0.47
TMX2-CTNND1H3BSU7 TMC6-201ENST00000306591 1681 ntTSL 5 BASIC17.99■□□□□ 0.47
TMX2-CTNND1H3BSU7 LIMS2-204ENST00000409286 1678 ntTSL 2 BASIC17.99■□□□□ 0.47
TMX2-CTNND1H3BSU7 KRT18-207ENST00000550600 1696 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
TMX2-CTNND1H3BSU7 AC148477.3-202ENST00000376617 1766 ntTSL 2 BASIC17.99■□□□□ 0.47
TMX2-CTNND1H3BSU7 C6orf136-203ENST00000376473 1402 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
TMX2-CTNND1H3BSU7 TCP11-204ENST00000373979 1882 ntAPPRIS P3 TSL 5 BASIC17.99■□□□□ 0.47
TMX2-CTNND1H3BSU7 STXBP2-202ENST00000414284 1859 ntAPPRIS ALT1 TSL 1 (best) BASIC17.99■□□□□ 0.47
TMX2-CTNND1H3BSU7 NPTX1-201ENST00000306773 5122 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
TMX2-CTNND1H3BSU7 CEP85L-205ENST00000419517 2079 ntAPPRIS P3 TSL 1 (best) BASIC17.99■□□□□ 0.47
TMX2-CTNND1H3BSU7 BAIAP2-204ENST00000428708 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC17.99■□□□□ 0.47
TMX2-CTNND1H3BSU7 SMPD3-203ENST00000563226 2093 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
TMX2-CTNND1H3BSU7 TMEM91-210ENST00000542945 1610 ntTSL 2 BASIC17.99■□□□□ 0.47
TMX2-CTNND1H3BSU7 LINC01819-201ENST00000422351 2156 ntTSL 5 BASIC17.99■□□□□ 0.47
TMX2-CTNND1H3BSU7 TOR3A-203ENST00000367627 2724 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
TMX2-CTNND1H3BSU7 OBSL1-204ENST00000404537 5841 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
TMX2-CTNND1H3BSU7 SUMF2-203ENST00000395435 1287 ntTSL 2 BASIC17.99■□□□□ 0.47
TMX2-CTNND1H3BSU7 RPS14-203ENST00000407193 784 ntAPPRIS P1 TSL 2 BASIC17.99■□□□□ 0.47
TMX2-CTNND1H3BSU7 EMC9-202ENST00000419198 953 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
TMX2-CTNND1H3BSU7 ZNF436-AS1-206ENST00000518821 461 ntTSL 2 BASIC17.99■□□□□ 0.47
TMX2-CTNND1H3BSU7 TMEM135-209ENST00000532959 1149 ntTSL 2 BASIC17.99■□□□□ 0.47
TMX2-CTNND1H3BSU7 AC079031.1-201ENST00000542627 1035 ntTSL 3 BASIC17.99■□□□□ 0.47
TMX2-CTNND1H3BSU7 YPEL3-204ENST00000563788 730 ntAPPRIS P1 TSL 3 BASIC17.99■□□□□ 0.47
TMX2-CTNND1H3BSU7 AC111152.3-201ENST00000569699 673 ntBASIC17.99■□□□□ 0.47
TMX2-CTNND1H3BSU7 AC027796.4-201ENST00000575741 874 ntTSL 5 BASIC17.99■□□□□ 0.47
TMX2-CTNND1H3BSU7 AC004771.4-201ENST00000576752 474 ntTSL 5 BASIC17.99■□□□□ 0.47
TMX2-CTNND1H3BSU7 MIF4GD-205ENST00000578305 569 ntTSL 5 BASIC17.99■□□□□ 0.47
TMX2-CTNND1H3BSU7 BIRC5-207ENST00000590449 568 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
TMX2-CTNND1H3BSU7 IGFLR1-209ENST00000592537 1195 ntAPPRIS P2 TSL 1 (best) BASIC17.99■□□□□ 0.47
TMX2-CTNND1H3BSU7 ACVR1B-201ENST00000257963 4563 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
TMX2-CTNND1H3BSU7 FBXL18-203ENST00000453700 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC17.99■□□□□ 0.47
TMX2-CTNND1H3BSU7 CBR1-205ENST00000530908 1924 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
TMX2-CTNND1H3BSU7 AC118553.2-203ENST00000639037 2590 ntAPPRIS P5 TSL 5 BASIC17.99■□□□□ 0.47
TMX2-CTNND1H3BSU7 DBNL-219ENST00000490734 2004 ntTSL 2 BASIC17.99■□□□□ 0.47
TMX2-CTNND1H3BSU7 CARD9-201ENST00000371732 2123 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
TMX2-CTNND1H3BSU7 SLC5A10-204ENST00000395647 2140 ntTSL 2 BASIC17.99■□□□□ 0.47
TMX2-CTNND1H3BSU7 PDCD7-201ENST00000204549 2851 ntAPPRIS P2 TSL 1 (best) BASIC17.99■□□□□ 0.47
TMX2-CTNND1H3BSU7 ADPGK-AS1-201ENST00000563592 2730 ntTSL 2 BASIC17.99■□□□□ 0.47
TMX2-CTNND1H3BSU7 DNM1-211ENST00000627061 2724 ntTSL 5 BASIC17.99■□□□□ 0.47
TMX2-CTNND1H3BSU7 CCT5-214ENST00000515676 1997 ntTSL 2 BASIC17.99■□□□□ 0.47
TMX2-CTNND1H3BSU7 GRM2-204ENST00000442933 2064 ntTSL 5 BASIC17.99■□□□□ 0.47
TMX2-CTNND1H3BSU7 ANKRD18DP-201ENST00000335478 2171 ntTSL 2 BASIC17.98■□□□□ 0.47
TMX2-CTNND1H3BSU7 RBFOX1-215ENST00000553186 2196 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
TMX2-CTNND1H3BSU7 LRRC32-202ENST00000404995 2656 ntAPPRIS P1 TSL 5 BASIC17.98■□□□□ 0.47
TMX2-CTNND1H3BSU7 CA11-201ENST00000084798 1844 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
TMX2-CTNND1H3BSU7 LANCL3-201ENST00000378619 3063 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
TMX2-CTNND1H3BSU7 ARPIN-202ENST00000460685 2145 ntTSL 2 BASIC17.98■□□□□ 0.47
TMX2-CTNND1H3BSU7 PPP1R3F-202ENST00000376188 2443 ntTSL 2 BASIC17.98■□□□□ 0.47
TMX2-CTNND1H3BSU7 CENPX-201ENST00000306704 751 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
TMX2-CTNND1H3BSU7 RPA2-201ENST00000313433 1237 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
TMX2-CTNND1H3BSU7 MRPL20-201ENST00000344843 721 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
TMX2-CTNND1H3BSU7 CRELD2-204ENST00000407217 1230 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
TMX2-CTNND1H3BSU7 AQP12A-202ENST00000429564 1110 ntAPPRIS P5 TSL 5 BASIC17.98■□□□□ 0.47
TMX2-CTNND1H3BSU7 LINC01128-207ENST00000449005 874 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 25.3 ms