Protein–RNA interactions for Protein: A0A0D9SF12

CCDC163, Coiled-coil domain-containing 163, humanhuman

Predictions only

Length 145 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC163A0A0D9SF12 DMD-208ENST00000378680 1858 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
CCDC163A0A0D9SF12 CYP2E1-205ENST00000463117 1912 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
CCDC163A0A0D9SF12 COL4A3BP-201ENST00000261415 2262 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
CCDC163A0A0D9SF12 DNAJB11-202ENST00000439351 2398 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CCDC163A0A0D9SF12 MEN1-206ENST00000377321 2614 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
CCDC163A0A0D9SF12 HOOK1-201ENST00000371208 5857 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CCDC163A0A0D9SF12 HSPB1-201ENST00000248553 909 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CCDC163A0A0D9SF12 ZNF655-215ENST00000440391 1198 ntTSL 2 BASIC18.11■□□□□ 0.49
CCDC163A0A0D9SF12 HOXD8-203ENST00000450510 1268 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
CCDC163A0A0D9SF12 AC092910.1-201ENST00000482027 1129 ntBASIC18.11■□□□□ 0.49
CCDC163A0A0D9SF12 RNA5SP415-201ENST00000517246 115 ntBASIC18.11■□□□□ 0.49
CCDC163A0A0D9SF12 FLJ20021-201ENST00000527564 790 ntTSL 2 BASIC18.11■□□□□ 0.49
CCDC163A0A0D9SF12 COX5A-202ENST00000562233 441 ntTSL 3 BASIC18.11■□□□□ 0.49
CCDC163A0A0D9SF12 FBF1-204ENST00000586631 621 ntAPPRIS ALT2 TSL 2 BASIC18.11■□□□□ 0.49
CCDC163A0A0D9SF12 HNRNPDL-210ENST00000630827 1318 ntAPPRIS ALT2 TSL 5 BASIC18.11■□□□□ 0.49
CCDC163A0A0D9SF12 TEAD4-201ENST00000358409 1637 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
CCDC163A0A0D9SF12 CORO1A-216ENST00000570045 1622 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CCDC163A0A0D9SF12 METTL21A-208ENST00000448007 1770 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CCDC163A0A0D9SF12 PRR23B-201ENST00000329447 1896 ntAPPRIS P1 BASIC18.11■□□□□ 0.49
CCDC163A0A0D9SF12 HMGA1-201ENST00000311487 1920 ntAPPRIS P4 TSL 1 (best) BASIC18.11■□□□□ 0.49
CCDC163A0A0D9SF12 TM9SF1-203ENST00000524835 1938 ntTSL 2 BASIC18.11■□□□□ 0.49
CCDC163A0A0D9SF12 CAPZB-202ENST00000264203 2068 ntTSL 2 BASIC18.11■□□□□ 0.49
CCDC163A0A0D9SF12 TULP1-208ENST00000614066 2084 ntAPPRIS ALT2 TSL 5 BASIC18.11■□□□□ 0.49
CCDC163A0A0D9SF12 HDAC1-201ENST00000373548 2124 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CCDC163A0A0D9SF12 LINC01006-201ENST00000333319 2292 ntBASIC18.11■□□□□ 0.49
CCDC163A0A0D9SF12 GABRA2-214ENST00000515082 2366 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
CCDC163A0A0D9SF12 YTHDF3-213ENST00000621820 2363 ntTSL 2 BASIC18.11■□□□□ 0.49
CCDC163A0A0D9SF12 ACTR5-201ENST00000243903 2565 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CCDC163A0A0D9SF12 ATAD3A-202ENST00000378755 2612 ntTSL 2 BASIC18.11■□□□□ 0.49
CCDC163A0A0D9SF12 AL035252.2-201ENST00000454676 3168 ntTSL 2 BASIC18.1■□□□□ 0.49
CCDC163A0A0D9SF12 GNA14-201ENST00000341700 2482 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
CCDC163A0A0D9SF12 UBE2J2-201ENST00000347370 2387 ntTSL 3 BASIC18.1■□□□□ 0.49
CCDC163A0A0D9SF12 PAQR4-203ENST00000572687 2251 ntTSL 2 BASIC18.1■□□□□ 0.49
CCDC163A0A0D9SF12 CLN3-204ENST00000357857 1720 ntTSL 2 BASIC18.1■□□□□ 0.49
CCDC163A0A0D9SF12 PMPCB-202ENST00000428154 1714 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
CCDC163A0A0D9SF12 CASTOR1-202ENST00000407689 1623 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
CCDC163A0A0D9SF12 HSP90B1-210ENST00000614327 1338 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
CCDC163A0A0D9SF12 IGLL1-202ENST00000330377 901 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
CCDC163A0A0D9SF12 SOD2-201ENST00000337404 991 ntTSL 2 BASIC18.1■□□□□ 0.49
CCDC163A0A0D9SF12 ROMO1-203ENST00000374077 422 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
CCDC163A0A0D9SF12 YBX2P1-201ENST00000394192 760 ntBASIC18.1■□□□□ 0.49
CCDC163A0A0D9SF12 KIRREL3-AS3-201ENST00000404882 831 ntBASIC18.1■□□□□ 0.49
CCDC163A0A0D9SF12 HMGN1P19-201ENST00000436976 333 ntBASIC18.1■□□□□ 0.49
CCDC163A0A0D9SF12 RPS27L-204ENST00000455271 923 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
CCDC163A0A0D9SF12 AC069287.3-201ENST00000527297 589 ntTSL 5 BASIC18.1■□□□□ 0.49
CCDC163A0A0D9SF12 AL589182.1-202ENST00000548416 533 ntTSL 4 BASIC18.1■□□□□ 0.49
CCDC163A0A0D9SF12 AC133919.2-201ENST00000565965 589 ntTSL 4 BASIC18.1■□□□□ 0.49
CCDC163A0A0D9SF12 HEXIM2-207ENST00000592695 1246 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
CCDC163A0A0D9SF12 AC025062.2-201ENST00000605477 670 ntBASIC18.1■□□□□ 0.49
CCDC163A0A0D9SF12 AL139424.1-201ENST00000607572 797 ntBASIC18.1■□□□□ 0.49
CCDC163A0A0D9SF12 PRRT4-207ENST00000535159 2897 ntAPPRIS P1 TSL 5 BASIC18.1■□□□□ 0.49
CCDC163A0A0D9SF12 UBL4A-202ENST00000369660 2382 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
CCDC163A0A0D9SF12 NEURL4-203ENST00000570460 4890 ntAPPRIS ALT2 TSL 5 BASIC18.1■□□□□ 0.49
CCDC163A0A0D9SF12 CLIP3-206ENST00000593074 2080 ntAPPRIS P1 TSL 2 BASIC18.1■□□□□ 0.49
CCDC163A0A0D9SF12 OCSTAMP-201ENST00000279028 2043 ntAPPRIS P1 TSL 5 BASIC18.1■□□□□ 0.49
CCDC163A0A0D9SF12 SEPT11-209ENST00000510515 1886 ntTSL 2 BASIC18.09■□□□□ 0.49
CCDC163A0A0D9SF12 CLN3-206ENST00000360019 1840 ntTSL 2 BASIC18.09■□□□□ 0.49
CCDC163A0A0D9SF12 BRSK2-201ENST00000308219 4089 ntAPPRIS P3 TSL 1 (best) BASIC18.09■□□□□ 0.49
CCDC163A0A0D9SF12 LONP1-203ENST00000585374 2882 ntTSL 5 BASIC18.09■□□□□ 0.49
CCDC163A0A0D9SF12 UNC5CL-202ENST00000373164 1620 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CCDC163A0A0D9SF12 TNFSF14-202ENST00000599359 1476 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CCDC163A0A0D9SF12 ETV2-204ENST00000403402 1335 ntAPPRIS P3 TSL 1 (best) BASIC18.09■□□□□ 0.49
CCDC163A0A0D9SF12 TMEM79-201ENST00000295694 2191 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CCDC163A0A0D9SF12 PODXL2-201ENST00000342480 2186 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CCDC163A0A0D9SF12 PMPCA-201ENST00000371717 2174 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CCDC163A0A0D9SF12 ELOF1-201ENST00000252445 1019 ntAPPRIS P1 TSL 2 BASIC18.09■□□□□ 0.49
CCDC163A0A0D9SF12 GUK1-202ENST00000366716 940 ntAPPRIS P3 TSL 1 (best) BASIC18.09■□□□□ 0.49
CCDC163A0A0D9SF12 CD9-202ENST00000382515 1229 ntTSL 5 BASIC18.09■□□□□ 0.49
CCDC163A0A0D9SF12 MOB1B-202ENST00000396051 1107 ntTSL 2 BASIC18.09■□□□□ 0.49
CCDC163A0A0D9SF12 AC004832.2-201ENST00000426397 482 ntBASIC18.09■□□□□ 0.49
CCDC163A0A0D9SF12 SRP19-202ENST00000445150 833 ntTSL 2 BASIC18.09■□□□□ 0.49
CCDC163A0A0D9SF12 MRPL20-203ENST00000482352 1049 ntTSL 2 BASIC18.09■□□□□ 0.49
CCDC163A0A0D9SF12 AC105339.3-201ENST00000560043 636 ntBASIC18.09■□□□□ 0.49
CCDC163A0A0D9SF12 AC010327.4-202ENST00000591484 748 ntBASIC18.09■□□□□ 0.49
CCDC163A0A0D9SF12 AL355385.1-201ENST00000606123 409 ntBASIC18.09■□□□□ 0.49
CCDC163A0A0D9SF12 C1QL3-202ENST00000619991 783 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
CCDC163A0A0D9SF12 ASAH1-255ENST00000637638 699 ntTSL 2 BASIC18.09■□□□□ 0.49
CCDC163A0A0D9SF12 AC107918.4-202ENST00000641623 219 ntBASIC18.09■□□□□ 0.49
CCDC163A0A0D9SF12 SORBS3-221ENST00000523965 2028 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
CCDC163A0A0D9SF12 ANKRD65-201ENST00000427211 1976 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
CCDC163A0A0D9SF12 OSBPL10-204ENST00000438237 2624 ntAPPRIS ALT2 TSL 2 BASIC18.09■□□□□ 0.49
CCDC163A0A0D9SF12 CRB2-202ENST00000373631 5550 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CCDC163A0A0D9SF12 NARF-204ENST00000390006 1766 ntTSL 2 BASIC18.09■□□□□ 0.49
CCDC163A0A0D9SF12 AC112907.3-201ENST00000577781 2400 ntBASIC18.09■□□□□ 0.49
CCDC163A0A0D9SF12 SNAI3-201ENST00000332281 1732 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CCDC163A0A0D9SF12 PDLIM7-202ENST00000355841 1689 ntAPPRIS P4 TSL 1 (best) BASIC18.09■□□□□ 0.49
CCDC163A0A0D9SF12 MSANTD2-202ENST00000374979 2349 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CCDC163A0A0D9SF12 PIF1-202ENST00000333425 2278 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
CCDC163A0A0D9SF12 KLK5-201ENST00000336334 1563 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
CCDC163A0A0D9SF12 P2RY6-204ENST00000393592 1515 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
CCDC163A0A0D9SF12 GFI1-203ENST00000427103 2693 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
CCDC163A0A0D9SF12 THAP3-203ENST00000377627 2053 ntAPPRIS P3 TSL 2 BASIC18.08■□□□□ 0.49
CCDC163A0A0D9SF12 ALG9-214ENST00000614444 2028 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
CCDC163A0A0D9SF12 SSBP3-216ENST00000610401 3168 ntTSL 5 BASIC18.08■□□□□ 0.49
CCDC163A0A0D9SF12 MLST8-232ENST00000569417 1870 ntAPPRIS P3 TSL 1 (best) BASIC18.08■□□□□ 0.49
CCDC163A0A0D9SF12 NPNT-214ENST00000514622 2362 ntTSL 2 BASIC18.08■□□□□ 0.48
CCDC163A0A0D9SF12 EPHA10-202ENST00000373048 5425 ntAPPRIS P2 TSL 5 BASIC18.08■□□□□ 0.48
CCDC163A0A0D9SF12 EXOSC5-201ENST00000221233 1118 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
CCDC163A0A0D9SF12 DPM3-201ENST00000341298 486 ntAPPRIS P1 TSL 2 BASIC18.08■□□□□ 0.48
CCDC163A0A0D9SF12 PMP22-202ENST00000395936 816 ntTSL 3 BASIC18.08■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 97 ms