Protein–RNA interactions for Protein: Q9Y5E6

PCDHB3, Protocadherin beta-3, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHB3Q9Y5E6 CDH23-212ENST00000616684 4814 ntTSL 5 BASIC18.01■□□□□ 0.47
PCDHB3Q9Y5E6 VLDLR-AS1-205ENST00000599229 1346 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
PCDHB3Q9Y5E6 SCFD2-204ENST00000611795 1320 ntTSL 5 BASIC18.01■□□□□ 0.47
PCDHB3Q9Y5E6 RRS1-201ENST00000320270 1706 ntAPPRIS P1 BASIC18.01■□□□□ 0.47
PCDHB3Q9Y5E6 SPAG1-206ENST00000520643 1723 ntTSL 2 BASIC18.01■□□□□ 0.47
PCDHB3Q9Y5E6 TFRC-202ENST00000392396 5032 ntAPPRIS P3 TSL 1 (best) BASIC18.01■□□□□ 0.47
PCDHB3Q9Y5E6 POLD3-203ENST00000527458 2122 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
PCDHB3Q9Y5E6 PCOLCE-AS1-201ENST00000442166 2537 ntTSL 2 BASIC18.01■□□□□ 0.47
PCDHB3Q9Y5E6 SPSB4-201ENST00000310546 2908 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
PCDHB3Q9Y5E6 RUSC2-202ENST00000455600 5636 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
PCDHB3Q9Y5E6 TMEM160-201ENST00000253047 663 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
PCDHB3Q9Y5E6 AC074183.1-201ENST00000439105 782 ntTSL 5 BASIC18.01■□□□□ 0.47
PCDHB3Q9Y5E6 LINC01293-201ENST00000453951 1266 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
PCDHB3Q9Y5E6 RAB6A-207ENST00000541588 758 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
PCDHB3Q9Y5E6 AL132780.2-201ENST00000557615 1021 ntTSL 3 BASIC18.01■□□□□ 0.47
PCDHB3Q9Y5E6 AC027682.5-201ENST00000567122 530 ntTSL 3 BASIC18.01■□□□□ 0.47
PCDHB3Q9Y5E6 C17orf62-221ENST00000581196 668 ntTSL 4 BASIC18.01■□□□□ 0.47
PCDHB3Q9Y5E6 C1QTNF8-202ENST00000621771 897 ntTSL 5 BASIC18.01■□□□□ 0.47
PCDHB3Q9Y5E6 AC005906.2-206ENST00000638180 1029 ntTSL 5 BASIC18.01■□□□□ 0.47
PCDHB3Q9Y5E6 GTF2H4-202ENST00000376316 1673 ntAPPRIS P1 TSL 5 BASIC18.01■□□□□ 0.47
PCDHB3Q9Y5E6 FADS1-204ENST00000433932 1690 ntTSL 2 BASIC18.01■□□□□ 0.47
PCDHB3Q9Y5E6 NR4A2-204ENST00000409572 2878 ntAPPRIS P1 TSL 5 BASIC18.01■□□□□ 0.47
PCDHB3Q9Y5E6 SNX11-201ENST00000359238 2315 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
PCDHB3Q9Y5E6 C22orf39-205ENST00000542103 1523 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
PCDHB3Q9Y5E6 PCSK5-202ENST00000376767 2845 ntTSL 2 BASIC18.01■□□□□ 0.47
PCDHB3Q9Y5E6 ZMYM5-202ENST00000382905 1382 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
PCDHB3Q9Y5E6 EDEM1-204ENST00000445686 1363 ntTSL 2 BASIC18.01■□□□□ 0.47
PCDHB3Q9Y5E6 CLIP2-202ENST00000361545 5445 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
PCDHB3Q9Y5E6 BIRC8-201ENST00000426466 2026 ntAPPRIS P1 BASIC18.01■□□□□ 0.47
PCDHB3Q9Y5E6 NAF1-202ENST00000422287 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
PCDHB3Q9Y5E6 AC068880.1-201ENST00000507289 2297 ntBASIC18.01■□□□□ 0.47
PCDHB3Q9Y5E6 ZSWIM4-201ENST00000254323 4339 ntAPPRIS P1 TSL 2 BASIC18.01■□□□□ 0.47
PCDHB3Q9Y5E6 STK25-203ENST00000403346 2210 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
PCDHB3Q9Y5E6 CYSTM1-201ENST00000261811 1336 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
PCDHB3Q9Y5E6 HAGHL-203ENST00000389703 1347 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
PCDHB3Q9Y5E6 C18orf21-205ENST00000592875 1581 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
PCDHB3Q9Y5E6 PHLDA1-202ENST00000602540 5741 ntAPPRIS ALT2 TSL 1 (best) BASIC18■□□□□ 0.47
PCDHB3Q9Y5E6 AC127496.1-202ENST00000573602 2091 ntTSL 2 BASIC18■□□□□ 0.47
PCDHB3Q9Y5E6 MYC-205ENST00000524013 2150 ntAPPRIS ALT1 TSL 1 (best) BASIC18■□□□□ 0.47
PCDHB3Q9Y5E6 PNPO-201ENST00000225573 2256 ntTSL 1 (best) BASIC18■□□□□ 0.47
PCDHB3Q9Y5E6 GUCA2B-201ENST00000372581 597 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
PCDHB3Q9Y5E6 PCED1CP-201ENST00000419887 785 ntBASIC18■□□□□ 0.47
PCDHB3Q9Y5E6 CR769775.1-204ENST00000439760 747 ntTSL 5 BASIC18■□□□□ 0.47
PCDHB3Q9Y5E6 TNFSF13-208ENST00000483039 959 ntTSL 2 BASIC18■□□□□ 0.47
PCDHB3Q9Y5E6 CCNJL-205ENST00000519673 940 ntTSL 2 BASIC18■□□□□ 0.47
PCDHB3Q9Y5E6 DUX4-205ENST00000570263 768 ntAPPRIS ALT2 TSL 1 (best) BASIC18■□□□□ 0.47
PCDHB3Q9Y5E6 YIPF2-209ENST00000590329 958 ntTSL 5 BASIC18■□□□□ 0.47
PCDHB3Q9Y5E6 RNF187-203ENST00000639044 708 ntAPPRIS P2 TSL 1 (best) BASIC18■□□□□ 0.47
PCDHB3Q9Y5E6 PODN-203ENST00000395871 2744 ntTSL 5 BASIC18■□□□□ 0.47
PCDHB3Q9Y5E6 SLC25A48-201ENST00000274513 1880 ntTSL 2 BASIC18■□□□□ 0.47
PCDHB3Q9Y5E6 DMD-208ENST00000378680 1858 ntTSL 1 (best) BASIC18■□□□□ 0.47
PCDHB3Q9Y5E6 ZNF280B-203ENST00000626650 5721 ntAPPRIS P1 TSL 2 BASIC18■□□□□ 0.47
PCDHB3Q9Y5E6 TBC1D3P2-202ENST00000577902 1649 ntBASIC18■□□□□ 0.47
PCDHB3Q9Y5E6 SYTL1-208ENST00000543823 2229 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
PCDHB3Q9Y5E6 ZDHHC23-201ENST00000330212 3778 ntAPPRIS P2 TSL 1 (best) BASIC18■□□□□ 0.47
PCDHB3Q9Y5E6 RIPK2-201ENST00000220751 2584 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
PCDHB3Q9Y5E6 JAKMIP1-208ENST00000637373 1362 ntTSL 5 BASIC18■□□□□ 0.47
PCDHB3Q9Y5E6 SAMD11-212ENST00000617307 2314 ntAPPRIS ALT2 TSL 5 BASIC18■□□□□ 0.47
PCDHB3Q9Y5E6 FBXL18-205ENST00000620087 2076 ntTSL 5 BASIC18■□□□□ 0.47
PCDHB3Q9Y5E6 PTPRJ-207ENST00000613246 7851 ntAPPRIS ALT2 TSL 5 BASIC18■□□□□ 0.47
PCDHB3Q9Y5E6 GAS2L1P1-201ENST00000420145 1480 ntBASIC18■□□□□ 0.47
PCDHB3Q9Y5E6 SLC39A7-201ENST00000374675 2153 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
PCDHB3Q9Y5E6 C12orf65-202ENST00000366329 1901 ntAPPRIS P2 TSL 2 BASIC18■□□□□ 0.47
PCDHB3Q9Y5E6 SIGIRR-202ENST00000397632 1598 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
PCDHB3Q9Y5E6 ABALON-201ENST00000629058 1903 ntBASIC18■□□□□ 0.47
PCDHB3Q9Y5E6 SENP6-202ENST00000370010 4644 ntAPPRIS P3 TSL 1 (best) BASIC17.99■□□□□ 0.47
PCDHB3Q9Y5E6 SYNM-204ENST00000594047 6407 ntAPPRIS ALT2 TSL 1 (best) BASIC17.99■□□□□ 0.47
PCDHB3Q9Y5E6 TBX20-201ENST00000408931 1871 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
PCDHB3Q9Y5E6 GGNBP2-210ENST00000611219 2315 ntTSL 2 BASIC17.99■□□□□ 0.47
PCDHB3Q9Y5E6 KCNQ2-205ENST00000360480 2775 ntAPPRIS ALT2 TSL 5 BASIC17.99■□□□□ 0.47
PCDHB3Q9Y5E6 CXorf40A-208ENST00000434353 1524 ntAPPRIS ALT1 TSL 5 BASIC17.99■□□□□ 0.47
PCDHB3Q9Y5E6 NR4A1-203ENST00000394824 2639 ntAPPRIS P1 TSL 5 BASIC17.99■□□□□ 0.47
PCDHB3Q9Y5E6 STRADB-202ENST00000392249 2190 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
PCDHB3Q9Y5E6 AC135782.1-201ENST00000537498 2154 ntTSL 2 BASIC17.99■□□□□ 0.47
PCDHB3Q9Y5E6 FADS2-209ENST00000521849 1703 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
PCDHB3Q9Y5E6 RGS3-231ENST00000613049 1726 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
PCDHB3Q9Y5E6 TRIM47-201ENST00000254816 2266 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
PCDHB3Q9Y5E6 PLEKHB1-203ENST00000398492 2275 ntAPPRIS ALT1 TSL 1 (best) BASIC17.99■□□□□ 0.47
PCDHB3Q9Y5E6 PYDC1-201ENST00000302964 813 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
PCDHB3Q9Y5E6 PIEZO1-202ENST00000327397 1246 ntTSL 2 BASIC17.99■□□□□ 0.47
PCDHB3Q9Y5E6 NDUFA1-201ENST00000371437 766 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
PCDHB3Q9Y5E6 AC114763.1-202ENST00000414911 867 ntTSL 3 BASIC17.99■□□□□ 0.47
PCDHB3Q9Y5E6 KRT18P56-201ENST00000507275 550 ntBASIC17.99■□□□□ 0.47
PCDHB3Q9Y5E6 NMU-205ENST00000511469 756 ntTSL 3 BASIC17.99■□□□□ 0.47
PCDHB3Q9Y5E6 TMEM41B-203ENST00000527813 803 ntTSL 5 BASIC17.99■□□□□ 0.47
PCDHB3Q9Y5E6 EEF1D-243ENST00000532400 419 ntTSL 3 BASIC17.99■□□□□ 0.47
PCDHB3Q9Y5E6 KCTD10-211ENST00000540411 866 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
PCDHB3Q9Y5E6 AL133352.1-203ENST00000557395 1234 ntAPPRIS P5 TSL 2 BASIC17.99■□□□□ 0.47
PCDHB3Q9Y5E6 UQCR11-201ENST00000585671 753 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
PCDHB3Q9Y5E6 AC008622.2-201ENST00000617006 1229 ntBASIC17.99■□□□□ 0.47
PCDHB3Q9Y5E6 AL772307.1-201ENST00000639363 1066 ntTSL 2 BASIC17.99■□□□□ 0.47
PCDHB3Q9Y5E6 WDSUB1-203ENST00000392796 1812 ntAPPRIS P1 TSL 2 BASIC17.99■□□□□ 0.47
PCDHB3Q9Y5E6 IFRD1-201ENST00000005558 1834 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
PCDHB3Q9Y5E6 EGFL6-201ENST00000361306 2398 ntAPPRIS P3 TSL 1 (best) BASIC17.99■□□□□ 0.47
PCDHB3Q9Y5E6 EGFL6-202ENST00000380602 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC17.99■□□□□ 0.47
PCDHB3Q9Y5E6 STARD4-203ENST00000502322 1467 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
PCDHB3Q9Y5E6 GNAS-AS1-202ENST00000443966 2341 ntTSL 5 BASIC17.99■□□□□ 0.47
PCDHB3Q9Y5E6 THAP12-201ENST00000260045 3300 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
PCDHB3Q9Y5E6 SPATA6L-207ENST00000475086 1444 ntAPPRIS P1 TSL 2 BASIC17.98■□□□□ 0.47
PCDHB3Q9Y5E6 GMDS-208ENST00000530927 1440 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 46 ms