Protein–RNA interactions for Protein: Q9Y587

AP4S1, AP-4 complex subunit sigma-1, humanhuman

Predictions only

Length 144 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AP4S1Q9Y587 CKLF-CMTM1-204ENST00000532838 587 ntAPPRIS ALT2 TSL 4 BASIC17.39■□□□□ 0.37
AP4S1Q9Y587 IL34-204ENST00000566361 1001 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
AP4S1Q9Y587 LIMD2-202ENST00000578061 756 ntAPPRIS P1 TSL 2 BASIC17.39■□□□□ 0.37
AP4S1Q9Y587 GSX2-205ENST00000611459 1262 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
AP4S1Q9Y587 SAMD11-202ENST00000342066 2551 ntAPPRIS P2 TSL 5 BASIC17.39■□□□□ 0.37
AP4S1Q9Y587 SAMD11-217ENST00000622503 2557 ntAPPRIS ALT2 TSL 5 BASIC17.39■□□□□ 0.37
AP4S1Q9Y587 CLN3-206ENST00000360019 1840 ntTSL 2 BASIC17.39■□□□□ 0.37
AP4S1Q9Y587 GPANK1-204ENST00000375900 1814 ntAPPRIS P1 TSL 2 BASIC17.39■□□□□ 0.37
AP4S1Q9Y587 ACSM2B-208ENST00000565322 1834 ntTSL 2 BASIC17.39■□□□□ 0.37
AP4S1Q9Y587 WWTR1-201ENST00000360632 2103 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
AP4S1Q9Y587 FAM135A-205ENST00000418814 6415 ntTSL 5 BASIC17.39■□□□□ 0.37
AP4S1Q9Y587 ANXA8L1-203ENST00000613703 1874 ntTSL 2 BASIC17.39■□□□□ 0.37
AP4S1Q9Y587 ELF2-204ENST00000394235 4012 ntAPPRIS P1 TSL 5 BASIC17.39■□□□□ 0.37
AP4S1Q9Y587 NCOA5-201ENST00000290231 3220 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
AP4S1Q9Y587 MRPL10-203ENST00000414011 1622 ntTSL 3 BASIC17.39■□□□□ 0.37
AP4S1Q9Y587 HIBCH-201ENST00000359678 1939 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
AP4S1Q9Y587 L1CAM-203ENST00000370055 4655 ntTSL 5 BASIC17.39■□□□□ 0.37
AP4S1Q9Y587 LGALS9C-209ENST00000581545 1378 ntTSL 5 BASIC17.39■□□□□ 0.37
AP4S1Q9Y587 HNRNPM-217ENST00000620401 2458 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
AP4S1Q9Y587 SMARCA4-215ENST00000590574 5282 ntAPPRIS ALT1 TSL 5 BASIC17.39■□□□□ 0.37
AP4S1Q9Y587 RTCA-203ENST00000370128 2535 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
AP4S1Q9Y587 PLIN2-201ENST00000276914 1972 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
AP4S1Q9Y587 SNCA-203ENST00000394986 1420 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
AP4S1Q9Y587 ANXA6-201ENST00000354546 2593 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
AP4S1Q9Y587 RRAGD-202ENST00000369415 4900 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
AP4S1Q9Y587 ADAMTS13-206ENST00000371929 4934 ntAPPRIS P4 TSL 1 (best) BASIC17.38■□□□□ 0.37
AP4S1Q9Y587 IFT74-203ENST00000433700 2119 ntAPPRIS P1 TSL 5 BASIC17.38■□□□□ 0.37
AP4S1Q9Y587 NFATC1-206ENST00000542384 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
AP4S1Q9Y587 PTGER3-208ENST00000370932 1841 ntAPPRIS ALT2 TSL 5 BASIC17.38■□□□□ 0.37
AP4S1Q9Y587 KRT81-202ENST00000615839 1505 ntAPPRIS ALT2 TSL 5 BASIC17.38■□□□□ 0.37
AP4S1Q9Y587 ANKRD29-208ENST00000592179 3361 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
AP4S1Q9Y587 FAM208B-201ENST00000328090 8626 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
AP4S1Q9Y587 DPP6-202ENST00000377770 3710 ntAPPRIS P4 TSL 1 (best) BASIC17.38■□□□□ 0.37
AP4S1Q9Y587 MFSD2A-201ENST00000372809 2173 ntTSL 2 BASIC17.38■□□□□ 0.37
AP4S1Q9Y587 AP001094.4-201ENST00000579008 2176 ntBASIC17.38■□□□□ 0.37
AP4S1Q9Y587 RHBDL1-201ENST00000219551 1560 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
AP4S1Q9Y587 MARVELD3-202ENST00000299952 2214 ntAPPRIS ALT2 TSL 2 BASIC17.38■□□□□ 0.37
AP4S1Q9Y587 PTMS-201ENST00000309083 1139 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
AP4S1Q9Y587 KRTAP5-8-201ENST00000398534 1183 ntAPPRIS P1 BASIC17.38■□□□□ 0.37
AP4S1Q9Y587 AC099681.3-201ENST00000421500 939 ntTSL 4 BASIC17.38■□□□□ 0.37
AP4S1Q9Y587 HMX1-202ENST00000506970 651 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
AP4S1Q9Y587 PLD4-205ENST00000553861 667 ntTSL 2 BASIC17.38■□□□□ 0.37
AP4S1Q9Y587 ASGR1-204ENST00000572879 797 ntTSL 5 BASIC17.38■□□□□ 0.37
AP4S1Q9Y587 SEPT4-215ENST00000580809 952 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
AP4S1Q9Y587 SYNGR4-202ENST00000595322 533 ntTSL 3 BASIC17.38■□□□□ 0.37
AP4S1Q9Y587 FXYD3-214ENST00000605677 633 ntTSL 2 BASIC17.38■□□□□ 0.37
AP4S1Q9Y587 IGF2-204ENST00000381406 5179 ntAPPRIS ALT1 TSL 2 BASIC17.38■□□□□ 0.37
AP4S1Q9Y587 AC104809.2-201ENST00000418218 2274 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
AP4S1Q9Y587 FAM181B-201ENST00000329203 3924 ntAPPRIS P1 BASIC17.38■□□□□ 0.37
AP4S1Q9Y587 FBXO18-203ENST00000397269 3640 ntTSL 5 BASIC17.38■□□□□ 0.37
AP4S1Q9Y587 ANKRD29-201ENST00000322980 1658 ntTSL 2 BASIC17.38■□□□□ 0.37
AP4S1Q9Y587 AL139384.1-201ENST00000612143 3047 ntBASIC17.38■□□□□ 0.37
AP4S1Q9Y587 MAFB-201ENST00000373313 3393 ntAPPRIS P1 BASIC17.38■□□□□ 0.37
AP4S1Q9Y587 GUCY1B3-206ENST00000507146 2709 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
AP4S1Q9Y587 LEF1-201ENST00000265165 3068 ntAPPRIS P3 TSL 1 (best) BASIC17.38■□□□□ 0.37
AP4S1Q9Y587 TOR2A-201ENST00000336067 1370 ntTSL 2 BASIC17.38■□□□□ 0.37
AP4S1Q9Y587 AC008687.8-201ENST00000599795 1748 ntAPPRIS P1 TSL 2 BASIC17.38■□□□□ 0.37
AP4S1Q9Y587 EPM2A-201ENST00000367519 3465 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
AP4S1Q9Y587 SBNO2-204ENST00000587024 4861 ntAPPRIS ALT2 TSL 2 BASIC17.38■□□□□ 0.37
AP4S1Q9Y587 DBNL-207ENST00000440166 1415 ntTSL 2 BASIC17.38■□□□□ 0.37
AP4S1Q9Y587 MAEA-208ENST00000505839 1444 ntTSL 2 BASIC17.38■□□□□ 0.37
AP4S1Q9Y587 KLF6-204ENST00000469435 2169 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
AP4S1Q9Y587 ARHGAP11A-201ENST00000361627 5898 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
AP4S1Q9Y587 BTG3-201ENST00000339775 1485 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
AP4S1Q9Y587 TOR2A-205ENST00000463577 2211 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
AP4S1Q9Y587 MUM1-216ENST00000627377 2235 ntAPPRIS ALT2 TSL 5 BASIC17.37■□□□□ 0.37
AP4S1Q9Y587 SATB2-202ENST00000417098 5730 ntAPPRIS P1 TSL 2 BASIC17.37■□□□□ 0.37
AP4S1Q9Y587 BCL2-202ENST00000398117 7461 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
AP4S1Q9Y587 ACAA1-209ENST00000450296 1570 ntTSL 5 BASIC17.37■□□□□ 0.37
AP4S1Q9Y587 NTMT1-209ENST00000611055 1562 ntAPPRIS P1 TSL 3 BASIC17.37■□□□□ 0.37
AP4S1Q9Y587 PDZD8-201ENST00000334464 9699 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
AP4S1Q9Y587 AP3D1-201ENST00000345016 4870 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
AP4S1Q9Y587 SEPHS1-201ENST00000327347 3273 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
AP4S1Q9Y587 TRIL-201ENST00000539664 4935 ntAPPRIS P1 BASIC17.37■□□□□ 0.37
AP4S1Q9Y587 LYPD3-201ENST00000244333 1694 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
AP4S1Q9Y587 TMEM230-206ENST00000379283 1660 ntAPPRIS P1 TSL 3 BASIC17.37■□□□□ 0.37
AP4S1Q9Y587 GP9-201ENST00000307395 889 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
AP4S1Q9Y587 TREX2-204ENST00000370212 861 ntTSL 5 BASIC17.37■□□□□ 0.37
AP4S1Q9Y587 TREX2-205ENST00000370231 1255 ntAPPRIS P1 TSL 5 BASIC17.37■□□□□ 0.37
AP4S1Q9Y587 TREX2-207ENST00000393862 907 ntAPPRIS P1 TSL 2 BASIC17.37■□□□□ 0.37
AP4S1Q9Y587 CSF1-205ENST00000420111 1083 ntTSL 5 BASIC17.37■□□□□ 0.37
AP4S1Q9Y587 TPT1-AS1-210ENST00000520590 873 ntTSL 5 BASIC17.37■□□□□ 0.37
AP4S1Q9Y587 MAZ-216ENST00000616501 991 ntTSL 5 BASIC17.37■□□□□ 0.37
AP4S1Q9Y587 MTCL1-205ENST00000517570 6009 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
AP4S1Q9Y587 ENC1-207ENST00000618628 5657 ntAPPRIS P1 TSL 5 BASIC17.37■□□□□ 0.37
AP4S1Q9Y587 SLCO5A1-206ENST00000530307 2630 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
AP4S1Q9Y587 PITX3-201ENST00000370002 1391 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
AP4S1Q9Y587 RAD1-202ENST00000341754 2341 ntAPPRIS P1 TSL 5 BASIC17.37■□□□□ 0.37
AP4S1Q9Y587 MGEA5-202ENST00000361464 5155 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
AP4S1Q9Y587 ASIC2-201ENST00000225823 3443 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
AP4S1Q9Y587 SEMA6C-209ENST00000613223 1950 ntTSL 5 BASIC17.37■□□□□ 0.37
AP4S1Q9Y587 TLE4-206ENST00000376552 3695 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
AP4S1Q9Y587 NPIPA8-201ENST00000525596 1565 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
AP4S1Q9Y587 NFATC4-215ENST00000554661 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
AP4S1Q9Y587 FAM13C-204ENST00000468840 2110 ntAPPRIS ALT2 TSL 2 BASIC17.36■□□□□ 0.37
AP4S1Q9Y587 RFC2-213ENST00000621097 1635 ntTSL 5 BASIC17.36■□□□□ 0.37
AP4S1Q9Y587 EHMT1-204ENST00000462484 2707 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
AP4S1Q9Y587 GXYLT2-201ENST00000389617 3260 ntAPPRIS P1 TSL 5 BASIC17.36■□□□□ 0.37
AP4S1Q9Y587 DTX2-201ENST00000324432 2769 ntAPPRIS P3 TSL 1 (best) BASIC17.36■□□□□ 0.37
AP4S1Q9Y587 VASN-201ENST00000304735 2806 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 19.9 ms