Protein–RNA interactions for Protein: Q9H270

VPS11, Vacuolar protein sorting-associated protein 11 homolog, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS11Q9H270 ALDH1A3-201ENST00000329841 3924 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
VPS11Q9H270 STX3-201ENST00000337979 3299 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
VPS11Q9H270 NOX4-201ENST00000263317 2388 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
VPS11Q9H270 MYZAP-201ENST00000267853 2361 ntAPPRIS P3 TSL 1 (best) BASIC18.52■□□□□ 0.55
VPS11Q9H270 MROH1-202ENST00000423230 1712 ntTSL 1 (best) BASIC18.52■□□□□ 0.55
VPS11Q9H270 ENPP1-201ENST00000360971 7442 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
VPS11Q9H270 CLN3-206ENST00000360019 1840 ntTSL 2 BASIC18.51■□□□□ 0.55
VPS11Q9H270 USP39-201ENST00000323701 2177 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
VPS11Q9H270 SETMAR-206ENST00000430981 1671 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
VPS11Q9H270 PPP1R16A-202ENST00000435887 2273 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
VPS11Q9H270 GIT1-203ENST00000394869 3711 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
VPS11Q9H270 ACOXL-205ENST00000439055 2373 ntTSL 2 BASIC18.51■□□□□ 0.55
VPS11Q9H270 CMTM8-201ENST00000307526 1174 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
VPS11Q9H270 TPD52L1-202ENST00000368388 2147 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
VPS11Q9H270 TLCD1-202ENST00000394933 784 ntTSL 2 BASIC18.51■□□□□ 0.55
VPS11Q9H270 ADGRD1-AS1-202ENST00000542980 1277 ntTSL 4 BASIC18.51■□□□□ 0.55
VPS11Q9H270 ARHGEF28-214ENST00000545377 6351 ntAPPRIS P3 TSL 5 BASIC18.51■□□□□ 0.55
VPS11Q9H270 AL353593.2-202ENST00000602947 550 ntTSL 4 BASIC18.51■□□□□ 0.55
VPS11Q9H270 AC006058.3-201ENST00000606217 1069 ntBASIC18.51■□□□□ 0.55
VPS11Q9H270 CR392000.1-201ENST00000624770 1228 ntBASIC18.51■□□□□ 0.55
VPS11Q9H270 CEP83-AS1-201ENST00000623122 2482 ntBASIC18.51■□□□□ 0.55
VPS11Q9H270 ASNS-206ENST00000437628 1638 ntTSL 2 BASIC18.51■□□□□ 0.55
VPS11Q9H270 STK25-201ENST00000316586 4619 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
VPS11Q9H270 GOLGA7-204ENST00000520817 1984 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
VPS11Q9H270 ZNF274-202ENST00000345813 2678 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
VPS11Q9H270 CACNA1B-205ENST00000371363 9758 ntAPPRIS ALT2 TSL 5 BASIC18.51■□□□□ 0.55
VPS11Q9H270 NOTCH3-201ENST00000263388 8666 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
VPS11Q9H270 OLA1-201ENST00000284719 4417 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
VPS11Q9H270 TCF4-201ENST00000354452 3482 ntAPPRIS ALT1 TSL 5 BASIC18.51■□□□□ 0.55
VPS11Q9H270 GPR42-201ENST00000454971 1804 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
VPS11Q9H270 TNIP1-221ENST00000610874 2629 ntTSL 5 BASIC18.51■□□□□ 0.55
VPS11Q9H270 SEMA6C-210ENST00000621728 1918 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
VPS11Q9H270 TCEA1-201ENST00000396401 2718 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
VPS11Q9H270 ANXA3-201ENST00000264908 1657 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
VPS11Q9H270 FBXO28-202ENST00000424254 1334 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
VPS11Q9H270 SMN1-209ENST00000514951 1308 ntTSL 2 BASIC18.5■□□□□ 0.55
VPS11Q9H270 DNAJC8-201ENST00000263697 1759 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
VPS11Q9H270 EIPR1-201ENST00000382125 1766 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
VPS11Q9H270 FKBP8-206ENST00000596558 1756 ntAPPRIS ALT1 TSL 2 BASIC18.5■□□□□ 0.55
VPS11Q9H270 KRT16P1-201ENST00000399124 1418 ntBASIC18.5■□□□□ 0.55
VPS11Q9H270 PHF12-205ENST00000577226 7679 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
VPS11Q9H270 SULT1A1-204ENST00000395609 1871 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
VPS11Q9H270 GRAMD2B-218ENST00000542322 2977 ntTSL 2 BASIC18.5■□□□□ 0.55
VPS11Q9H270 NOS3-210ENST00000484524 2537 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
VPS11Q9H270 CYP4F2-201ENST00000011989 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC18.5■□□□□ 0.55
VPS11Q9H270 CLDN9-201ENST00000445369 2050 ntAPPRIS P1 BASIC18.5■□□□□ 0.55
VPS11Q9H270 NDUFS7-210ENST00000539480 1743 ntTSL 2 BASIC18.5■□□□□ 0.55
VPS11Q9H270 PDZRN3-202ENST00000308537 1136 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
VPS11Q9H270 NMRK1-201ENST00000361092 1185 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
VPS11Q9H270 TMEM35B-201ENST00000373337 922 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
VPS11Q9H270 AGTRAP-203ENST00000376629 1100 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
VPS11Q9H270 A3GALT2-201ENST00000442999 1023 ntAPPRIS P1 TSL 5 BASIC18.5■□□□□ 0.55
VPS11Q9H270 HGNC:18790-208ENST00000506380 798 ntAPPRIS P1 TSL 3 BASIC18.5■□□□□ 0.55
VPS11Q9H270 JPT2-204ENST00000561516 1065 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
VPS11Q9H270 AC009090.2-201ENST00000565829 472 ntTSL 3 BASIC18.5■□□□□ 0.55
VPS11Q9H270 AL353708.3-201ENST00000610272 989 ntBASIC18.5■□□□□ 0.55
VPS11Q9H270 AC103746.1-201ENST00000617440 1133 ntTSL 3 BASIC18.5■□□□□ 0.55
VPS11Q9H270 SQSTM1-216ENST00000626660 274 ntTSL 5 BASIC18.5■□□□□ 0.55
VPS11Q9H270 C1orf159-205ENST00000421241 1841 ntAPPRIS P3 TSL 2 BASIC18.5■□□□□ 0.55
VPS11Q9H270 PNLDC1-207ENST00000610273 1940 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
VPS11Q9H270 AC008556.1-201ENST00000610908 2040 ntBASIC18.5■□□□□ 0.55
VPS11Q9H270 LYPD3-201ENST00000244333 1694 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
VPS11Q9H270 DBN1-201ENST00000292385 3072 ntAPPRIS P4 TSL 1 (best) BASIC18.5■□□□□ 0.55
VPS11Q9H270 SDHA-204ENST00000504309 2067 ntTSL 5 BASIC18.5■□□□□ 0.55
VPS11Q9H270 AKIP1-207ENST00000529876 1421 ntTSL 2 BASIC18.49■□□□□ 0.55
VPS11Q9H270 TADA3-202ENST00000343450 2554 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
VPS11Q9H270 KCTD2-201ENST00000322444 3635 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
VPS11Q9H270 TES-201ENST00000358204 2782 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
VPS11Q9H270 HIC1-202ENST00000399849 3156 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
VPS11Q9H270 RIMS4-201ENST00000372851 5203 ntAPPRIS P3 TSL 1 (best) BASIC18.49■□□□□ 0.55
VPS11Q9H270 DGKI-203ENST00000446122 4070 ntAPPRIS ALT2 TSL 5 BASIC18.49■□□□□ 0.55
VPS11Q9H270 FAM66C-209ENST00000544214 2623 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
VPS11Q9H270 CHUK-201ENST00000370397 3625 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
VPS11Q9H270 MT3-201ENST00000200691 569 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
VPS11Q9H270 ATP5D-201ENST00000215375 997 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
VPS11Q9H270 CLDND2-201ENST00000291715 974 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
VPS11Q9H270 C7orf50-203ENST00000397100 1264 ntAPPRIS P2 TSL 3 BASIC18.49■□□□□ 0.55
VPS11Q9H270 METTL5-206ENST00000409965 880 ntAPPRIS P2 TSL 1 (best) BASIC18.49■□□□□ 0.55
VPS11Q9H270 AC096537.1-201ENST00000437416 684 ntTSL 5 BASIC18.49■□□□□ 0.55
VPS11Q9H270 RTBDN-203ENST00000458671 1066 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
VPS11Q9H270 AC008040.2-201ENST00000461049 708 ntBASIC18.49■□□□□ 0.55
VPS11Q9H270 FDX2-207ENST00000494368 584 ntTSL 4 BASIC18.49■□□□□ 0.55
VPS11Q9H270 SPINK2-202ENST00000504762 659 ntAPPRIS ALT2 TSL 2 BASIC18.49■□□□□ 0.55
VPS11Q9H270 ADM-205ENST00000528544 586 ntTSL 2 BASIC18.49■□□□□ 0.55
VPS11Q9H270 C1QBPP2-201ENST00000528754 825 ntBASIC18.49■□□□□ 0.55
VPS11Q9H270 AC027451.1-201ENST00000530667 553 ntTSL 4 BASIC18.49■□□□□ 0.55
VPS11Q9H270 TYROBP-209ENST00000589517 415 ntAPPRIS ALT1 TSL 1 (best) BASIC18.49■□□□□ 0.55
VPS11Q9H270 CD24-208ENST00000622315 825 ntAPPRIS ALT2 TSL 2 BASIC18.49■□□□□ 0.55
VPS11Q9H270 FCMR-210ENST00000628511 1055 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
VPS11Q9H270 SYT7-209ENST00000542836 1362 ntTSL 5 BASIC18.49■□□□□ 0.55
VPS11Q9H270 C16orf59-204ENST00000563531 1864 ntAPPRIS ALT2 TSL 5 BASIC18.49■□□□□ 0.55
VPS11Q9H270 NFATC1-210ENST00000587635 2195 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
VPS11Q9H270 RNF222-201ENST00000344001 2786 ntAPPRIS P1 BASIC18.49■□□□□ 0.55
VPS11Q9H270 ANKRD6-201ENST00000339746 3073 ntAPPRIS ALT1 TSL 1 (best) BASIC18.49■□□□□ 0.55
VPS11Q9H270 NEU1-206ENST00000375631 2045 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
VPS11Q9H270 OPN5-204ENST00000489301 1931 ntAPPRIS ALT2 TSL 5 BASIC18.49■□□□□ 0.55
VPS11Q9H270 LRRC27-201ENST00000344079 1809 ntAPPRIS ALT2 TSL 2 BASIC18.49■□□□□ 0.55
VPS11Q9H270 FLJ13224-201ENST00000313737 1514 ntBASIC18.49■□□□□ 0.55
VPS11Q9H270 TBC1D20-201ENST00000354200 4466 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
VPS11Q9H270 TWIST2-202ENST00000612363 1404 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 38.5 ms